BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0044.p (135 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DKG7.1 B1DKG7_9BACL SUF system FeS assembly protein, NifU family 216 4e-55 B3KBK0.1 B3KBK0_9BACI SUF system FeS assembly protein, NifU family 206 5e-52 C4L4Y7.1 C4L4Y7_EXISA SUF system FeS assembly protein, NifU family 179 6e-44 C1P854.1 C1P854_BACCO SUF system FeS assembly protein, NifU family 179 8e-44 A6CT44.1 A6CT44_9BACI YurV 176 4e-43 >B1DKG7.1 B1DKG7_9BACL SUF system FeS assembly protein, NifU family Length = 141 Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 102/126 (80%), Positives = 113/126 (89%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRNRG+ DA+ I LNNPTCGDRI+LQL+VEDG V DA++SGEGCSIS+SSAS Sbjct: 12 MDHYKNPRNRGTLNTDAVTINLNNPTCGDRISLQLQVEDGKVIDAKFSGEGCSISLSSAS 71 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFEDYEDIEALSGVNKFPARIKCATLAWNA 120 MMTEAVKG+T E AL LA+RFS LMKGE VDFE+ EDIEALSGVNKFPARIKCATLAWNA Sbjct: 72 MMTEAVKGKTYEEALGLAERFSGLMKGEDVDFEENEDIEALSGVNKFPARIKCATLAWNA 131 Query: 121 LRKGID 126 LRKGI+ Sbjct: 132 LRKGIE 137 >B3KBK0.1 B3KBK0_9BACI SUF system FeS assembly protein, NifU family Length = 139 Score = 206 bits (524), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 104/128 (81%), Positives = 120/128 (93%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRNRG F +DA+ I+LNNPTCGDRI+LQLKVE+GVV DA+Y+GEGCSISMSSAS Sbjct: 12 MDHYKNPRNRGKFEEDAVTIDLNNPTCGDRISLQLKVENGVVADAKYTGEGCSISMSSAS 71 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFEDYEDIEALSGVNKFPARIKCATLAWNA 120 MMT+AVKG+T++ A+ LADRFSSLMKG+ VDF++YEDIEALSGVNKFPARIKCATLAWNA Sbjct: 72 MMTDAVKGRTLDEAISLADRFSSLMKGDEVDFDEYEDIEALSGVNKFPARIKCATLAWNA 131 Query: 121 LRKGIDVE 128 LRKGID + Sbjct: 132 LRKGIDAK 139 >C4L4Y7.1 C4L4Y7_EXISA SUF system FeS assembly protein, NifU family Length = 144 Score = 179 bits (455), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 83/128 (64%), Positives = 107/128 (83%), Gaps = 3/128 (2%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRNRG +D + ++LNNPTCGD + LQL+VED +VKDA++ GEGCSIS++SAS Sbjct: 15 MDHYKNPRNRGVI-EDGVTVDLNNPTCGDSLRLQLQVEDNIVKDAKFEGEGCSISLASAS 73 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFEDYE--DIEALSGVNKFPARIKCATLAW 118 MMT+ VKG+TVE AL+LA+ FS +++G+ D + ++ DIEALSGV+KFPARIKCATLAW Sbjct: 74 MMTQIVKGKTVEEALQLANIFSEMVQGKEYDTDTFDLGDIEALSGVSKFPARIKCATLAW 133 Query: 119 NALRKGID 126 AL KG+D Sbjct: 134 KALEKGVD 141 >C1P854.1 C1P854_BACCO SUF system FeS assembly protein, NifU family Length = 147 Score = 179 bits (453), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 84/132 (63%), Positives = 110/132 (83%), Gaps = 5/132 (3%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRNRGS D +L +++NNPTCGDRI L LKVE G+++DA+++GEGCSISM+SAS Sbjct: 14 MDHYKNPRNRGSLEDGSLTVDMNNPTCGDRIHLTLKVEGGLIQDAKFTGEGCSISMASAS 73 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFEDYE---DIEALSGVNKFPARIKCATLA 117 MMT+AVKG+TV+ AL+L+ FS +++G+ D+E+ E DIEAL GV+KFPARIKCATLA Sbjct: 74 MMTQAVKGKTVDEALKLSHIFSEMVQGK--DYEEAEDLGDIEALHGVSKFPARIKCATLA 131 Query: 118 WNALRKGIDVEE 129 W A+ KG+ E+ Sbjct: 132 WKAMEKGVRSEK 143 >A6CT44.1 A6CT44_9BACI YurV Length = 144 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 82/126 (65%), Positives = 103/126 (81%), Gaps = 1/126 (0%) Query: 1 MDHYKNPRNRGSFADDALKIELNNPTCGDRITLQLKVEDGVVKDARYSGEGCSISMSSAS 60 MDHYKNPRN+GS D +L +++NNPTCGDRI L +KVEDG V DA++ GEGCSISM+SAS Sbjct: 15 MDHYKNPRNKGSLEDGSLTVDMNNPTCGDRIHLHMKVEDGKVTDAKFDGEGCSISMASAS 74 Query: 61 MMTEAVKGQTVEHALELADRFSSLMKGEAVDFE-DYEDIEALSGVNKFPARIKCATLAWN 119 MMT+ VKG+ VE AL+L++ FS++M+G+ D + D DIEAL GV KFPARIKCATLAW Sbjct: 75 MMTQIVKGKDVESALKLSEVFSNMMQGKEYDEDIDLGDIEALQGVAKFPARIKCATLAWK 134 Query: 120 ALRKGI 125 A+ KG+ Sbjct: 135 AMEKGV 140 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.130 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 776,806,727 Number of extensions: 26578261 Number of successful extensions: 54874 Number of sequences better than 1.0e-05: 1429 Number of HSP's gapped: 52895 Number of HSP's successfully gapped: 1429 Length of query: 135 Length of database: 3,060,696,203 Length adjustment: 99 Effective length of query: 36 Effective length of database: 2,128,015,718 Effective search space: 76608565848 Effective search space used: 76608565848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)