BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0043.p (465 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBK1.1 B3KBK1_9BACI FeS assembly protein SufB 879 0.0 B1DKG6.1 B1DKG6_9BACL FeS assembly protein SufB 850 0.0 A8W0N3.1 A8W0N3_9BACI Aspartate carbamoyltransferase 782 0.0 Q9K7A2.1 Q9K7A2_BACHD BH3467 protein 778 0.0 Q5WDQ2.1 Q5WDQ2_BACSK ABC transporter 768 0.0 >B3KBK1.1 B3KBK1_9BACI FeS assembly protein SufB Length = 465 Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/465 (88%), Positives = 438/465 (94%) Query: 1 MAKKAPDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYK 60 MAKKAP+MEEY+YGFRDEHK+IFQ+GKGLT E+V EIS IKNEPEWML+FRLKALEQF K Sbjct: 1 MAKKAPEMEEYKYGFRDEHKAIFQTGKGLTREVVTEISKIKNEPEWMLEFRLKALEQFEK 60 Query: 61 MPMPKWGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVS 120 MPMP+WGG+LDELDF+DIQYYVRPSEKQGKTWEEVP+EIKETFDKLGIPEAEQKFLAGVS Sbjct: 61 MPMPRWGGDLDELDFNDIQYYVRPSEKQGKTWEEVPAEIKETFDKLGIPEAEQKFLAGVS 120 Query: 121 AQYESEVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+MQK+LEDQGVIF DTDTALREHPE+ K++F T++PP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMQKDLEDQGVIFMDTDTALREHPEILKEYFATVVPPTDNKFAALNSAVW 180 Query: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNS 240 SGGSFIYVPKGV+CE+PLQAYFRINSENMGQFERTLI+ADEDSFVHYVEGCTAPIYSTNS Sbjct: 181 SGGSFIYVPKGVQCEIPLQAYFRINSENMGQFERTLIIADEDSFVHYVEGCTAPIYSTNS 240 Query: 241 LHSAVVEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 LHSAVVEI+C KNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP Sbjct: 241 LHSAVVEIICKKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 Query: 301 AVVLKGRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLA 360 AVVLKGRGAKG VLSIAVAGK QHQDAGAKM+HLAPD HGGKVTYRGLA Sbjct: 301 AVVLKGRGAKGMVLSIAVAGKGQHQDAGAKMLHLAPDTTSTIVSKSISKHGGKVTYRGLA 360 Query: 361 SFGRKAEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMS 420 SFGR AEGAK+NIKCDTLILDN+STSDTIPYNEI NDNI LEHEATVSKVSE+QLFYLMS Sbjct: 361 SFGRNAEGAKANIKCDTLILDNESTSDTIPYNEIKNDNITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 RGLTE EATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG Sbjct: 421 RGLTEDEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 >B1DKG6.1 B1DKG6_9BACL FeS assembly protein SufB Length = 465 Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/465 (86%), Positives = 430/465 (92%) Query: 1 MAKKAPDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYK 60 MA P+ME+Y+YGFRDEHK++FQSGKGLT EIV+ IS +KNEP+WML+FRLK+LEQF K Sbjct: 1 MAGTMPEMEDYKYGFRDEHKAVFQSGKGLTEEIVRTISEMKNEPQWMLEFRLKSLEQFNK 60 Query: 61 MPMPKWGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVS 120 MPMP WGG++ +LDF+DIQYYV+PSEKQGKTWEEVP EIKETFDKLGIPEAEQKFLAGVS Sbjct: 61 MPMPNWGGDMADLDFNDIQYYVKPSEKQGKTWEEVPQEIKETFDKLGIPEAEQKFLAGVS 120 Query: 121 AQYESEVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVW 180 AQYESEVVYHSMQ++LE QGVIFTD DTALRE+P+L K++F TIIP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHSMQEDLEKQGVIFTDMDTALREYPDLVKEYFSTIIPRTDNKFAALNSAVW 180 Query: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNS 240 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLI+ADEDSFVHYVEGCTAPIYSTNS Sbjct: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLIIADEDSFVHYVEGCTAPIYSTNS 240 Query: 241 LHSAVVEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 LHSAVVEIL KNAR RYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP Sbjct: 241 LHSAVVEILVKKNARCRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 Query: 301 AVVLKGRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLA 360 AV+LKGRGAKG VLSIAVAGK QHQDAGAKM+HLAPD HGGKVTYRGLA Sbjct: 301 AVILKGRGAKGMVLSIAVAGKGQHQDAGAKMLHLAPDTTSTIVSKSISKHGGKVTYRGLA 360 Query: 361 SFGRKAEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMS 420 SFGR +EG+KSNIKCDTLILDN+STSDTIPYNEIMNDNI LEHEATVSKVSE+QLFYLMS Sbjct: 361 SFGRNSEGSKSNIKCDTLILDNESTSDTIPYNEIMNDNITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 RGL+EAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG Sbjct: 421 RGLSEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 >A8W0N3.1 A8W0N3_9BACI Aspartate carbamoyltransferase Length = 465 Score = 782 bits (2019), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/465 (78%), Positives = 416/465 (89%) Query: 1 MAKKAPDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYK 60 MAKK P++ EYQYGF D+ SIF+S KGLT++IV+EIS +K+EP+WMLDFRLK+LE FYK Sbjct: 1 MAKKMPEISEYQYGFSDKDVSIFRSKKGLTSDIVREISQMKDEPQWMLDFRLKSLETFYK 60 Query: 61 MPMPKWGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVS 120 PMP+WGGNL+ELDFD+I YYV+PSEK ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 KPMPQWGGNLNELDFDEIFYYVKPSEKSERSWDEVPEEIKNTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+MQ++LED GVIF DTDTAL+E E+F+K+FGT+IPP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMQQDLEDLGVIFKDTDTALKEDEEIFRKYFGTVIPPTDNKFAALNSAVW 180 Query: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNS 240 SGGSFIYVPKGVK E PLQAYFRINSENMGQFERTLI+ADEDS VHYVEGCTAP+Y+TNS Sbjct: 181 SGGSFIYVPKGVKTETPLQAYFRINSENMGQFERTLIIADEDSSVHYVEGCTAPVYTTNS 240 Query: 241 LHSAVVEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 LHSAVVEI+ KNA RYTTIQNWAPN++NLVTKRAVA+ENA MEWVDGNIGSKLTMKYP Sbjct: 241 LHSAVVEIIVEKNAYCRYTTIQNWAPNVFNLVTKRAVAQENAVMEWVDGNIGSKLTMKYP 300 Query: 301 AVVLKGRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLA 360 AVV+KGRGA+G+VLSIA+AGK QHQDAGAKM HLAPD GGKVTYRG+ Sbjct: 301 AVVMKGRGARGNVLSIAIAGKGQHQDAGAKMHHLAPDCSSSIVSKSISKQGGKVTYRGIV 360 Query: 361 SFGRKAEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMS 420 FGRKAE + SNI+CDTLI+DN+STSDTIPYNEI+N++I L+HEATVSKVSEEQLFYLMS Sbjct: 361 HFGRKAERSMSNIECDTLIMDNESTSDTIPYNEILNNDITLQHEATVSKVSEEQLFYLMS 420 Query: 421 RGLTEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 RG++E EAT+MIVMGFIEPFTKELPMEYAVEMNRLI FEMEGSIG Sbjct: 421 RGISEQEATEMIVMGFIEPFTKELPMEYAVEMNRLISFEMEGSIG 465 >Q9K7A2.1 Q9K7A2_BACHD BH3467 protein Length = 465 Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/465 (77%), Positives = 418/465 (89%) Query: 1 MAKKAPDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYK 60 MAKK P++ EY+YGF D SIF+S +GLT EIV+EIS +K EP+WMLDFRLK+LEQFYK Sbjct: 1 MAKKMPEIGEYKYGFSDRDVSIFRSKRGLTREIVEEISRMKQEPQWMLDFRLKSLEQFYK 60 Query: 61 MPMPKWGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVS 120 MPMP+WGG+L ELDFDDI YYV+PSEK ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLTELDFDDITYYVKPSEKSERSWDEVPEEIKNTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M+++LE+ G+IF DTD+AL+E+ ++FK++FGTIIPP DNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLEELGIIFKDTDSALKENEDIFKEYFGTIIPPTDNKFAALNSAVW 180 Query: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNS 240 SGGSFIYVPKGVK E PLQAYFRINSENMGQFERTLI+ADEDS VHYVEGCTAP+Y+TNS Sbjct: 181 SGGSFIYVPKGVKTETPLQAYFRINSENMGQFERTLIIADEDSSVHYVEGCTAPVYTTNS 240 Query: 241 LHSAVVEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 LHSAVVEI+ K+A RYTTIQNWAPN+YNLVTKRAVA ENATMEW+DGNIGSKLTMKYP Sbjct: 241 LHSAVVEIIVKKDAYCRYTTIQNWAPNVYNLVTKRAVAYENATMEWIDGNIGSKLTMKYP 300 Query: 301 AVVLKGRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLA 360 AV++KG GAKG++LSIA+AGK QHQDAGAK++HLAP+ GGKV+YRG+A Sbjct: 301 AVIMKGEGAKGTILSIAIAGKGQHQDAGAKVLHLAPNCSSTIVSKSISKQGGKVSYRGIA 360 Query: 361 SFGRKAEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMS 420 FGRK++G+KS I+CDTLI+DN+STSDTIPYNEI+N++I LEHEATVSKVSE+QLFYLMS Sbjct: 361 HFGRKSQGSKSKIECDTLIMDNESTSDTIPYNEILNNDITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 RG++E EAT+MIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG Sbjct: 421 RGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 >Q5WDQ2.1 Q5WDQ2_BACSK ABC transporter Length = 465 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/465 (76%), Positives = 412/465 (88%) Query: 1 MAKKAPDMEEYQYGFRDEHKSIFQSGKGLTAEIVKEISAIKNEPEWMLDFRLKALEQFYK 60 MAK PD+ EY+YGF D SIF+SG+GLT EIV+EIS +K EP+WMLDFRLK+LEQFYK Sbjct: 1 MAKNMPDIGEYKYGFSDRDVSIFRSGRGLTKEIVEEISRMKEEPQWMLDFRLKSLEQFYK 60 Query: 61 MPMPKWGGNLDELDFDDIQYYVRPSEKQGKTWEEVPSEIKETFDKLGIPEAEQKFLAGVS 120 MPMP+WGG+L EL+FDDI YYV+ S+K ++W+EVP EIK TFDKLGIPEAEQK+LAGVS Sbjct: 61 MPMPQWGGDLSELNFDDITYYVKASDKTERSWDEVPEEIKNTFDKLGIPEAEQKYLAGVS 120 Query: 121 AQYESEVVYHSMQKNLEDQGVIFTDTDTALREHPELFKKFFGTIIPPADNKFAALNSAVW 180 AQYESEVVYH+M+++LE GV+F DTD+AL+E+ ++FK++F T+IP ADNKFAALNSAVW Sbjct: 121 AQYESEVVYHNMKEDLESLGVVFKDTDSALKENEDIFKEYFATVIPAADNKFAALNSAVW 180 Query: 181 SGGSFIYVPKGVKCEVPLQAYFRINSENMGQFERTLILADEDSFVHYVEGCTAPIYSTNS 240 SGGSFIYVPKGVK + PLQAYFRINSENMGQFERTLI+ADEDS VHYVEGCTAP+Y+TNS Sbjct: 181 SGGSFIYVPKGVKVDTPLQAYFRINSENMGQFERTLIIADEDSSVHYVEGCTAPVYTTNS 240 Query: 241 LHSAVVEILCMKNARVRYTTIQNWAPNIYNLVTKRAVAEENATMEWVDGNIGSKLTMKYP 300 LHSAVVEI+ NA RYTTIQNWAPN+YNLVTKRAVA++ ATMEWVDGNIGSKLTMKYP Sbjct: 241 LHSAVVEIIVKDNAYCRYTTIQNWAPNVYNLVTKRAVADKGATMEWVDGNIGSKLTMKYP 300 Query: 301 AVVLKGRGAKGSVLSIAVAGKDQHQDAGAKMIHLAPDXXXXXXXXXXXXHGGKVTYRGLA 360 AV+++G GAKG+VLSIA+AGK QHQDAGAK+ HLAP+ GGKVTYRG+ Sbjct: 301 AVIMRGEGAKGTVLSIAIAGKGQHQDAGAKVTHLAPNCSSTIVSKSISKQGGKVTYRGIC 360 Query: 361 SFGRKAEGAKSNIKCDTLILDNQSTSDTIPYNEIMNDNIVLEHEATVSKVSEEQLFYLMS 420 FGRK++G+KS I+CDTLI+DNQSTSDTIPYNEI+N+NI LEHEATVSKVSE+QLFYLMS Sbjct: 361 HFGRKSDGSKSKIECDTLIMDNQSTSDTIPYNEILNNNITLEHEATVSKVSEDQLFYLMS 420 Query: 421 RGLTEAEATQMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 RG++E EAT+MIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG Sbjct: 421 RGVSEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG 465 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,652,464,113 Number of extensions: 108727345 Number of successful extensions: 261820 Number of sequences better than 1.0e-05: 2066 Number of HSP's gapped: 257594 Number of HSP's successfully gapped: 2079 Length of query: 465 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 326 Effective length of database: 1,751,175,118 Effective search space: 570883088468 Effective search space used: 570883088468 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)