BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0038.p
         (118 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D8L3.1 B1D8L3_9BACL SNARE associated Golgi protein                  125   1e-27
B8DE10.1 B8DE10_LISMH DedA family protein                             119   6e-26
Q92BL3.1 Q92BL3_LISIN Lin1535 protein                                 119   1e-25
Q71ZH0.1 Q71ZH0_LISMF DedA family protein                             119   1e-25
C1KVE7.1 C1KVE7_LISMC Putative uncharacterized protein                119   1e-25

>B1D8L3.1 B1D8L3_9BACL SNARE associated Golgi protein
          Length = 203

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 77/115 (66%)

Query: 1   MQQLLASISETALHLVDTXXXXXXXXXXXLESACIPIPSEVIMLSGGFLVAQGSLTFAEV 60
           M  ++  IS  A+ L+D            LESACIPIPSEVI+LSGG   A G++++  V
Sbjct: 1   MHSVIDWISNIAVQLIDAVGIYGIFIGMVLESACIPIPSEVILLSGGLAAANGTISWQAV 60

Query: 61  VVAGAVGNLIGSILAYYVGRAGGRRLLDKYGKYILLNAHHLEQAERWFARFGEGT 115
           V+AG +GN+ GSI+AYYVG  GGR++L+KYGKY+     HL QAERWF R+G  +
Sbjct: 61  VIAGVLGNVAGSIIAYYVGALGGRKVLNKYGKYVFFRNSHLTQAERWFTRYGASS 115


>B8DE10.1 B8DE10_LISMH DedA family protein
          Length = 208

 Score =  119 bits (299), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 74/112 (66%)

Query: 1   MQQLLASISETALHLVDTXXXXXXXXXXXLESACIPIPSEVIMLSGGFLVAQGSLTFAEV 60
           +  L+ S+ +  + LVD+           +ES CIP+PSEVIML GGF+   G L F  V
Sbjct: 2   LHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLV 61

Query: 61  VVAGAVGNLIGSILAYYVGRAGGRRLLDKYGKYILLNAHHLEQAERWFARFG 112
           V AG  GNL+GS++AYY+G+ GGR L+ KYGKYI LN  HL++AE WF R+G
Sbjct: 62  VFAGISGNLVGSLIAYYIGKFGGRALVLKYGKYIFLNVKHLDKAELWFGRYG 113


>Q92BL3.1 Q92BL3_LISIN Lin1535 protein
          Length = 208

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 74/112 (66%)

Query: 1   MQQLLASISETALHLVDTXXXXXXXXXXXLESACIPIPSEVIMLSGGFLVAQGSLTFAEV 60
           +  L+ S+ +  + LVD+           +ES CIP+PSEVIML GGF+   G L F  V
Sbjct: 2   LHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLV 61

Query: 61  VVAGAVGNLIGSILAYYVGRAGGRRLLDKYGKYILLNAHHLEQAERWFARFG 112
           V AG  GNL+GS++AYY+G+ GGR L+ K+GKYI LN  HL++AE WF R+G
Sbjct: 62  VFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYG 113


>Q71ZH0.1 Q71ZH0_LISMF DedA family protein
          Length = 208

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 74/112 (66%)

Query: 1   MQQLLASISETALHLVDTXXXXXXXXXXXLESACIPIPSEVIMLSGGFLVAQGSLTFAEV 60
           +  L+ S+ +  + LVD+           +ES CIP+PSEVIML GGF+   G L F  V
Sbjct: 2   LHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLV 61

Query: 61  VVAGAVGNLIGSILAYYVGRAGGRRLLDKYGKYILLNAHHLEQAERWFARFG 112
           V AG  GNL+GS++AYY+G+ GGR L+ K+GKYI LN  HL++AE WF R+G
Sbjct: 62  VFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYG 113


>C1KVE7.1 C1KVE7_LISMC Putative uncharacterized protein
          Length = 208

 Score =  119 bits (297), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 74/112 (66%)

Query: 1   MQQLLASISETALHLVDTXXXXXXXXXXXLESACIPIPSEVIMLSGGFLVAQGSLTFAEV 60
           +  L+ S+ +  + LVD+           +ES CIP+PSEVIML GGF+   G L F  V
Sbjct: 2   LHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIMLFGGFMAEAGKLNFWLV 61

Query: 61  VVAGAVGNLIGSILAYYVGRAGGRRLLDKYGKYILLNAHHLEQAERWFARFG 112
           V AG  GNL+GS++AYY+G+ GGR L+ K+GKYI LN  HL++AE WF R+G
Sbjct: 62  VFAGIAGNLVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHLDKAELWFGRYG 113


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.139    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 599,710,915
Number of extensions: 21653441
Number of successful extensions: 72665
Number of sequences better than 1.0e-05: 674
Number of HSP's gapped: 72652
Number of HSP's successfully gapped: 674
Length of query: 118
Length of database: 3,060,696,203
Length adjustment: 84
Effective length of query: 34
Effective length of database: 2,269,330,943
Effective search space: 77157252062
Effective search space used: 77157252062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)