BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0037.p
         (213 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D8L6.1 B1D8L6_9BACL Sensor protein EC=2.7.13.3                       89   2e-16

>B1D8L6.1 B1D8L6_9BACL Sensor protein EC=2.7.13.3
          Length = 491

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 84/205 (40%), Gaps = 4/205 (1%)

Query: 1   MSIRLKFLLSYAAMXXXXXXXXXXXXXXXTIVYHGDVQSLKSAYE---NKFEGMEERDTR 57
           MSIR K LLSYAAM                I Y GDV++LK  YE   N+F         
Sbjct: 1   MSIRFKLLLSYAAMLVIPLISILVISLLLVIFYQGDVKNLKGVYETTENRFGHEAVEHAV 60

Query: 58  NLIKHTFMQNXXXXXXXXXXXXXSADMLKKNTSLFIRSDQKTMYASKXXXXXXXXXXXXP 117
             IK T +++             SAD+ K ++ + +R      Y S+            P
Sbjct: 61  KEIKRTSVRHPDLLLDSTYLNDMSADLEKNDSGIIVRRGDDVYYRSEIMAQSPRLAADLP 120

Query: 118 AFKNAGVHEEPFRKKYNNNWYQIAQFDLLSKASEPVSIFLISKTDPLVHFVRTFFPIXXX 177
            +           KK  N  Y   QFD++ K  EPVS+F+ISK DPL +F+R +FP    
Sbjct: 121 EYAQPNASNGYTEKKEGNTNYVFLQFDVMFK-DEPVSLFIISKEDPLTYFIRKYFPTLFV 179

Query: 178 XXXXXXXXXXXXXXXYMSRKIIHPL 202
                          YMS+ II  L
Sbjct: 180 CSLLILIITHVLLTTYMSKNIIRRL 204


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 736,533,801
Number of extensions: 20659506
Number of successful extensions: 31582
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 31603
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 83
Effective length of database: 1,835,964,253
Effective search space: 152385032999
Effective search space used: 152385032999
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)