BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0036.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8L6.1 B1D8L6_9BACL Sensor protein EC=2.7.13.3 285 3e-75 C2YXP4.1 C2YXP4_BACCE Putative uncharacterized protein 267 9e-70 C1EV20.1 C1EV20_BACC3 Sensor histidine kinase EC=2.7.13.3 266 2e-69 B3YPZ5.1 B3YPZ5_BACCE Sensor protein EC=2.7.13.3 265 3e-69 C2P4Z8.1 C2P4Z8_BACCE Putative uncharacterized protein 265 3e-69 >B1D8L6.1 B1D8L6_9BACL Sensor protein EC=2.7.13.3 Length = 491 Score = 285 bits (729), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 140/273 (51%), Positives = 187/273 (68%), Gaps = 2/273 (0%) Query: 4 GNLDFRVKIDSKDELGQLGMAFEEXXXXXXXXXXXXXXYESNRKELITNISHDLKTPITA 63 GNLDF+++++ KDE+GQLGMAFE+ YE NRKELI +ISHDL+TP+TA Sbjct: 217 GNLDFKLQVEGKDEIGQLGMAFEDMRSRMQDSIRIQAQYEENRKELIASISHDLRTPLTA 276 Query: 64 IKGYVDGILEGVADSPEKNEKYMRTIAAKAGEMDHLIDELFLFSKLDMQKLPFSFESVPI 123 I+GY+DG++EGVAD+PEK+ +YM+TI AKA E++HLI+ELFL+SKLD+ + PF FE+V + Sbjct: 277 IRGYIDGVMEGVADTPEKSARYMKTIDAKAAELEHLINELFLYSKLDLNRQPFLFEAVEL 336 Query: 124 LPFLKDWAXXXXXXXXXXXXXXXIDMNGGEAARISVDRDSFKRVLGNIIQNSLKYMDKPE 183 LPFL D + D++ + + +DRD FKRVL NII NS++YMDKP Sbjct: 337 LPFLNDLSEELQFELEKKSIAFEPDIHVPAGSFVRMDRDQFKRVLNNIISNSVRYMDKPL 396 Query: 184 KRITVQTLVEGKNFTLAIGDNGPGIPPEAAGHIFERFYRAEQSRNTNTGGSGLGLAIARQ 243 I ++ +EG + I DNG G+ + H+FERFYRA++SR+ TGGSGLGLAIA+Q Sbjct: 397 PVIRIKAYLEGNQAVMKISDNGIGMKDKDLEHMFERFYRADESRSVKTGGSGLGLAIAKQ 456 Query: 244 IILEHGGTIHADSKEGEGTEIRIVLPIE--EGG 274 I+ H G I A SK GT I + LPI EGG Sbjct: 457 IMESHNGEITAASKWTAGTTISLYLPIHSREGG 489 >C2YXP4.1 C2YXP4_BACCE Putative uncharacterized protein Length = 484 Score = 267 bits (682), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 136/275 (49%), Positives = 180/275 (65%), Gaps = 2/275 (0%) Query: 1 VTEGNLDFRVKIDSKDELGQLGMAFEEXXXXXXXXXXXXXXYESNRKELITNISHDLKTP 60 + EGNLDF++ + S DE+GQL FEE YE NRKELI+NISHDLKTP Sbjct: 210 IKEGNLDFQIPVTSHDEIGQLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTP 269 Query: 61 ITAIKGYVDGILEGVADSPEKNEKYMRTIAAKAGEMDHLIDELFLFSKLDMQKLPFSFES 120 IT+I GYV+GI +GVA++PEK +KY+ TI KA MD LIDELFLFSKLD+ ++PF FE+ Sbjct: 270 ITSIIGYVEGIKDGVANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFET 329 Query: 121 VPILPFLKDWAXXXXXXXXXXXXXXXIDMNGGEAARISVDRDSFKRVLGNIIQNSLKYMD 180 + + F+++ + ++ ++ D + RV+ N+I NS+KYMD Sbjct: 330 IELNMFMQELLEEMQMDLSEEGIGVHLQLHSS-PLYVTADCEKINRVISNLIHNSVKYMD 388 Query: 181 KPEKRITVQTLVEGKNFTLAIGDNGPGIPPEAAGHIFERFYRAEQSRNTNTGGSGLGLAI 240 K EK+ITV L + + + DNG GI + +IFERFYRAEQSRN++TGGSGLGLAI Sbjct: 389 KEEKKITVTVLSDNNTVIMKVMDNGAGIEADTLPYIFERFYRAEQSRNSSTGGSGLGLAI 448 Query: 241 ARQIILEHGGTIHADSKEGEGTEIRIVL-PIEEGG 274 A+QI+ EHGG I A+SK GEGT I L ++E G Sbjct: 449 AKQIVEEHGGEIWAESKLGEGTSIFFSLKKVQECG 483 >C1EV20.1 C1EV20_BACC3 Sensor histidine kinase EC=2.7.13.3 Length = 484 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/275 (49%), Positives = 179/275 (65%), Gaps = 2/275 (0%) Query: 1 VTEGNLDFRVKIDSKDELGQLGMAFEEXXXXXXXXXXXXXXYESNRKELITNISHDLKTP 60 + EGNLDF++ + S DE+GQL FEE YE NRKELI+NISHDLKTP Sbjct: 210 IKEGNLDFQIPVTSHDEIGQLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTP 269 Query: 61 ITAIKGYVDGILEGVADSPEKNEKYMRTIAAKAGEMDHLIDELFLFSKLDMQKLPFSFES 120 IT+I GYV+GI +GVA++PEK +KY+ TI KA MD LIDELFLFSKLD+ ++PF FE+ Sbjct: 270 ITSIIGYVEGIKDGVANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFET 329 Query: 121 VPILPFLKDWAXXXXXXXXXXXXXXXIDMNGGEAARISVDRDSFKRVLGNIIQNSLKYMD 180 V + F+++ + ++ ++ D + RV+ N+I NS+KYMD Sbjct: 330 VELNMFMQELIEEMQMDLSKEGIEVNLQLHAS-PLYVTADCEKINRVISNLIHNSVKYMD 388 Query: 181 KPEKRITVQTLVEGKNFTLAIGDNGPGIPPEAAGHIFERFYRAEQSRNTNTGGSGLGLAI 240 K EK+ITV + + + DNG GI + +IFERFYRAEQSRN++TGGSGLGLAI Sbjct: 389 KEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAI 448 Query: 241 ARQIILEHGGTIHADSKEGEGTEIRIVL-PIEEGG 274 A+QI+ EHGG I A+SK GEGT I L ++E G Sbjct: 449 AKQIVEEHGGEIWAESKLGEGTSIFFSLKKVQECG 483 >B3YPZ5.1 B3YPZ5_BACCE Sensor protein EC=2.7.13.3 Length = 484 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 137/275 (49%), Positives = 178/275 (64%), Gaps = 2/275 (0%) Query: 1 VTEGNLDFRVKIDSKDELGQLGMAFEEXXXXXXXXXXXXXXYESNRKELITNISHDLKTP 60 + EGNLDF++ + S DE+GQL FEE YE NRKELI+NISHDLKTP Sbjct: 210 IKEGNLDFQIPVTSHDEIGQLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTP 269 Query: 61 ITAIKGYVDGILEGVADSPEKNEKYMRTIAAKAGEMDHLIDELFLFSKLDMQKLPFSFES 120 IT+I GYV+GI +GVA++PEK EKY+ TI KA MD LIDELFLFSKLD+ ++PF FE+ Sbjct: 270 ITSIIGYVEGIKDGVANTPEKMEKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFET 329 Query: 121 VPILPFLKDWAXXXXXXXXXXXXXXXIDMNGGEAARISVDRDSFKRVLGNIIQNSLKYMD 180 V + F+++ + ++ + D + RV+ N+I NS+KYMD Sbjct: 330 VELNMFMQELIEEMQMDLSKEGIEVNLQLHAS-PLYVKADCEKINRVISNLIHNSVKYMD 388 Query: 181 KPEKRITVQTLVEGKNFTLAIGDNGPGIPPEAAGHIFERFYRAEQSRNTNTGGSGLGLAI 240 K EK+ITV + + + DNG GI + +IFERFYRAEQSRN++TGGSGLGLAI Sbjct: 389 KEEKKITVTVWSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAI 448 Query: 241 ARQIILEHGGTIHADSKEGEGTEIRIVL-PIEEGG 274 A+QII EHGG I A+S+ GEGT I L +E+ G Sbjct: 449 AKQIIEEHGGNIWAESELGEGTSIFFSLEKVEKCG 483 >C2P4Z8.1 C2P4Z8_BACCE Putative uncharacterized protein Length = 484 Score = 265 bits (677), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 136/275 (49%), Positives = 180/275 (65%), Gaps = 2/275 (0%) Query: 1 VTEGNLDFRVKIDSKDELGQLGMAFEEXXXXXXXXXXXXXXYESNRKELITNISHDLKTP 60 + EGNLDF++ I S+DE+GQL FEE YE NRKELI+NISHDLKTP Sbjct: 210 IKEGNLDFQIPITSQDEIGQLNQGFEEMRKRLKESIEMQTQYEENRKELISNISHDLKTP 269 Query: 61 ITAIKGYVDGILEGVADSPEKNEKYMRTIAAKAGEMDHLIDELFLFSKLDMQKLPFSFES 120 IT+I GYV+GI +GVA++PEK +KY+ TI KA MD LIDELFLFSKLD+ ++PF FE+ Sbjct: 270 ITSIIGYVEGIKDGVANTPEKMDKYLTTIHTKAKHMDTLIDELFLFSKLDLNRVPFQFET 329 Query: 121 VPILPFLKDWAXXXXXXXXXXXXXXXIDMNGGEAARISVDRDSFKRVLGNIIQNSLKYMD 180 V + F+++ + ++ ++ D + RV+ N+I NS+KYMD Sbjct: 330 VELNTFMQELIEEMQMDLSKEGIEVRLQLHAS-PLYVTADCEKINRVISNLIHNSVKYMD 388 Query: 181 KPEKRITVQTLVEGKNFTLAIGDNGPGIPPEAAGHIFERFYRAEQSRNTNTGGSGLGLAI 240 K EK+ITV + + + DNG GI + +IFERFYRAEQSRN++TGGSGLGLAI Sbjct: 389 KEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAI 448 Query: 241 ARQIILEHGGTIHADSKEGEGTEIRIVL-PIEEGG 274 A+QI+ EHGG I A+S+ G+GT I L +EE G Sbjct: 449 AKQIVEEHGGEIWAESELGKGTSIFFSLEKVEECG 483 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,554,703,505 Number of extensions: 61789899 Number of successful extensions: 225748 Number of sequences better than 1.0e-05: 26917 Number of HSP's gapped: 198079 Number of HSP's successfully gapped: 27114 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 130 (54.7 bits)