BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0035.p (229 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8L5.1 B1D8L5_9BACL Two component transcriptional regulator, w... 343 5e-93 C2PLG5.1 C2PLG5_BACCE Putative uncharacterized protein 308 2e-82 C3FRN1.1 C3FRN1_BACTB Putative uncharacterized protein 308 3e-82 C3D895.1 C3D895_BACTU Putative uncharacterized protein 308 3e-82 C3CQA3.1 C3CQA3_BACTU Putative uncharacterized protein 308 3e-82 >B1D8L5.1 B1D8L5_9BACL Two component transcriptional regulator, winged helix family Length = 229 Score = 343 bits (881), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 152/228 (66%), Positives = 200/228 (87%) Query: 1 MKRTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLN 60 M +++L++ED+ +IAELQRDYLE+NG++ ++A +GE GL +SLSG ++L++LD+M+PK+N Sbjct: 1 MIKSVLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIPKMN 60 Query: 61 GFEVCKRIRGELDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRY 120 GFEVCK+IR + DIPIL+VT+ +DID++RGLGLGADDY+TKPFKPAELVARVKAHL+RY Sbjct: 61 GFEVCKKIREKQDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLARY 120 Query: 121 DRLKGRGSSTSELEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVFSKDQL 180 +RL G+ + ++IR L ++PD+R+ ++ DEE LTTKEFDLLYFLA HPN VFSK+ L Sbjct: 121 ERLVGKKDVKNIVQIRDLYIDPDTRKVYVNDEEAVLTTKEFDLLYFLASHPNKVFSKEHL 180 Query: 181 FERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRFR 228 FER+WGVD+LGD QTVTVHIRK+REKIE+DSANP+YIET+WGAGYR R Sbjct: 181 FERIWGVDALGDMQTVTVHIRKIREKIEKDSANPVYIETVWGAGYRCR 228 >C2PLG5.1 C2PLG5_BACCE Putative uncharacterized protein Length = 229 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 145/228 (63%), Positives = 184/228 (80%), Gaps = 2/228 (0%) Query: 1 MKRTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLN 60 MKR IL++EDE SIAELQRDYLE+N +Q ++ +GE GL+++L + LI+LD+MLPK+N Sbjct: 1 MKR-ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMN 59 Query: 61 GFEVCKRIRGELDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRY 120 GFE+CK+IR DIPIL+V+A++EDID +RGLGLGADDY+TKPF P+ELVARVKAH+SRY Sbjct: 60 GFEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRY 119 Query: 121 DRLKGRGSSTSE-LEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVFSKDQ 179 +RL G S + L I G+ ++ +R+ FI +EE+S TTKEFDLL F HPN V +K+Q Sbjct: 120 ERLSGNVSKQRDTLYIHGISIDQRARKVFINNEEISFTTKEFDLLTFFVTHPNQVLNKEQ 179 Query: 180 LFERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRF 227 LFER+WG+DS GD TV VHIRKLREKIE D A+P YIET+WGAGYRF Sbjct: 180 LFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >C3FRN1.1 C3FRN1_BACTB Putative uncharacterized protein Length = 229 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 144/228 (63%), Positives = 186/228 (81%), Gaps = 2/228 (0%) Query: 1 MKRTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLN 60 MKR IL++EDE SIAELQRDYLE+N +Q ++ +GE GL+++L +++LI+LD+MLPK+N Sbjct: 1 MKR-ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMN 59 Query: 61 GFEVCKRIRGELDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRY 120 GFE+CK+IR DIPIL+V+A++EDID +RGLGLGADDY+TKPF P+ELVARVKAH++RY Sbjct: 60 GFEICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARY 119 Query: 121 DRLKGRGSSTSE-LEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVFSKDQ 179 +RL G S + L I G+ ++ +R+ FI +EEV+ TTKEFDLL F HPN V +K+Q Sbjct: 120 ERLSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQ 179 Query: 180 LFERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRF 227 LFER+WG+DS GD TV VHIRKLREKIE D A+P YIET+WGAGYRF Sbjct: 180 LFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >C3D895.1 C3D895_BACTU Putative uncharacterized protein Length = 229 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 144/228 (63%), Positives = 186/228 (81%), Gaps = 2/228 (0%) Query: 1 MKRTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLN 60 MKR IL++EDE SIAELQRDYLE+N +Q ++ +GE GL+++L +++LI+LD+MLPK+N Sbjct: 1 MKR-ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMN 59 Query: 61 GFEVCKRIRGELDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRY 120 GFE+CK+IR DIPIL+V+A++EDID +RGLGLGADDY+TKPF P+ELVARVKAH++RY Sbjct: 60 GFEICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARY 119 Query: 121 DRLKGRGSSTSE-LEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVFSKDQ 179 +RL G S + L I G+ ++ +R+ FI +EEV+ TTKEFDLL F HPN V +K+Q Sbjct: 120 ERLSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQ 179 Query: 180 LFERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRF 227 LFER+WG+DS GD TV VHIRKLREKIE D A+P YIET+WGAGYRF Sbjct: 180 LFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 >C3CQA3.1 C3CQA3_BACTU Putative uncharacterized protein Length = 229 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 144/228 (63%), Positives = 186/228 (81%), Gaps = 2/228 (0%) Query: 1 MKRTILIVEDEPSIAELQRDYLEMNGYQTEIAVNGEQGLELSLSGKFELIVLDVMLPKLN 60 MKR IL++EDE SIAELQRDYLE+N +Q ++ +GE GL+++L +++LI+LD+MLPK+N Sbjct: 1 MKR-ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMN 59 Query: 61 GFEVCKRIRGELDIPILMVTARREDIDIVRGLGLGADDYMTKPFKPAELVARVKAHLSRY 120 GFE+CK+IR DIPIL+V+A++EDID +RGLGLGADDY+TKPF P+ELVARVKAH++RY Sbjct: 60 GFEICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARY 119 Query: 121 DRLKGRGSSTSE-LEIRGLRLNPDSRRAFIRDEEVSLTTKEFDLLYFLAQHPNHVFSKDQ 179 +RL G S + L I G+ ++ +R+ FI +EEV+ TTKEFDLL F HPN V +K+Q Sbjct: 120 ERLSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQ 179 Query: 180 LFERLWGVDSLGDTQTVTVHIRKLREKIEEDSANPLYIETLWGAGYRF 227 LFER+WG+DS GD TV VHIRKLREKIE D A+P YIET+WGAGYRF Sbjct: 180 LFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRF 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.140 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,346,367,456 Number of extensions: 54214675 Number of successful extensions: 230428 Number of sequences better than 1.0e-05: 29075 Number of HSP's gapped: 203744 Number of HSP's successfully gapped: 29268 Length of query: 229 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 98 Effective length of database: 1,826,543,238 Effective search space: 179001237324 Effective search space used: 179001237324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)