BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0031.p
         (50 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A9KPU6.1 A9KPU6_CLOPH Putative uncharacterized protein                 66   1e-09
O86663.1 O86663_STRCO Putative integral membrane protein               60   6e-08
Q07W90.1 Q07W90_SHEFN Putative uncharacterized protein                 58   3e-07
B1DE21.1 B1DE21_9BACL Putative uncharacterized protein                 55   3e-06
C2PX61.1 C2PX61_BACCE Integral membrane protein                        54   4e-06

>A9KPU6.1 A9KPU6_CLOPH Putative uncharacterized protein
          Length = 395

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 1   LGASLGDYLSQPRSEGGLQLGTTGTSIIFIAIILGLVLYLTKTKKD 46
           LGASLGD+LSQP+S GGL LGTT TS+IF+A IL  V++L  TKKD
Sbjct: 204 LGASLGDFLSQPKSNGGLGLGTTSTSVIFLAAILATVVFLIVTKKD 249


>O86663.1 O86663_STRCO Putative integral membrane protein
          Length = 279

 Score = 60.1 bits (144), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/46 (63%), Positives = 37/46 (80%)

Query: 1   LGASLGDYLSQPRSEGGLQLGTTGTSIIFIAIILGLVLYLTKTKKD 46
           LGAS+GDYLSQP  +GGL  GT  TS +F+A+ILGLV+YL  ++KD
Sbjct: 222 LGASIGDYLSQPTGDGGLGFGTVVTSGLFLAVILGLVVYLAVSRKD 267


>Q07W90.1 Q07W90_SHEFN Putative uncharacterized protein
          Length = 269

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/47 (61%), Positives = 35/47 (74%)

Query: 1   LGASLGDYLSQPRSEGGLQLGTTGTSIIFIAIILGLVLYLTKTKKDQ 47
           LGAS+GD LSQP  +GGL  GTT TSI+F+AII+ LV YL+   K Q
Sbjct: 220 LGASIGDLLSQPIRKGGLGFGTTSTSIVFLAIIIALVAYLSVRAKQQ 266


>B1DE21.1 B1DE21_9BACL Putative uncharacterized protein
          Length = 400

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 34/46 (73%)

Query: 1   LGASLGDYLSQPRSEGGLQLGTTGTSIIFIAIILGLVLYLTKTKKD 46
           LGASLGDYLSQ +  GGL+LG T TS+IF+  IL ++L L  TK D
Sbjct: 206 LGASLGDYLSQTKKNGGLELGATVTSVIFLIAILAVILLLAVTKLD 251


>C2PX61.1 C2PX61_BACCE Integral membrane protein
          Length = 278

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 37/46 (80%)

Query: 1   LGASLGDYLSQPRSEGGLQLGTTGTSIIFIAIILGLVLYLTKTKKD 46
            GAS GDYLSQP   GGL LGT GTS++F+ IIL LV+YLTKTKKD
Sbjct: 227 FGASFGDYLSQPHDSGGLGLGTVGTSVLFLVIILSLVIYLTKTKKD 272


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.142    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 272,715,024
Number of extensions: 7108478
Number of successful extensions: 24577
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 24577
Number of HSP's successfully gapped: 14
Length of query: 50
Length of database: 3,060,696,203
Length adjustment: 23
Effective length of query: 27
Effective length of database: 2,844,012,858
Effective search space: 76788347166
Effective search space used: 76788347166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)