BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0029.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D8L4.1 B1D8L4_9BACL Undecaprenol kinase EC=3.6.1.27 287 8e-76 C3EI67.1 C3EI67_BACTK Undecaprenyl-diphosphatase 218 5e-55 C3GYD7.1 C3GYD7_BACTU Undecaprenyl-diphosphatase 218 7e-55 B7HHD8.1 B7HHD8_BACC4 Bacitracin resistance protein EC=2.7.1.66 217 8e-55 B7IN76.1 B7IN76_BACC2 Bacitracin resistance protein EC=2.7.1.66 217 8e-55 >B1D8L4.1 B1D8L4_9BACL Undecaprenol kinase EC=3.6.1.27 Length = 288 Score = 287 bits (734), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 158/263 (60%), Positives = 183/263 (69%), Gaps = 9/263 (3%) Query: 17 TEFLPVSSTGHLILSGELLGFTGEKADTFEIIIQLGAILAVAVIYWRRILGLLGLVKVDS 76 TEFLPVSSTGHLILSG+LL FTG+KADTFEIIIQLGAILAVAVIYWRRI LLG+ + Sbjct: 27 TEFLPVSSTGHLILSGKLLNFTGDKADTFEIIIQLGAILAVAVIYWRRIFNLLGIKGLSP 86 Query: 77 ENGNTNAKQ---KLNLIHVILACLPAMVLGLVLHSFIKTYLFSPYTVXXXXXXXXXXXXX 133 E + +LNL+H+ILACLPAMVLGLVLHSFI +YLFS YTV Sbjct: 87 EMAGAQQDKLPGRLNLLHIILACLPAMVLGLVLHSFITSYLFSAYTVLVGLVFGGIFMLF 146 Query: 134 XQ-YKRTAIQAENIDQLSYKQAITIGLFQCLSLWPGFSRSXXXXXXXXXXXXXXXXXXNF 192 + ++++Q++ +DQ++YKQA+ IGLFQCL+LWPGFSRS NF Sbjct: 147 GESSSKSSVQSDGVDQITYKQAVYIGLFQCLALWPGFSRSGATIAGGLLAGVGYRAATNF 206 Query: 193 SFLIAIPMMVAASGYELLKSYHTLTASDAGFFITGXXXXXXXXXXXXXXXXKLLXXXXLE 252 SFLIAIPMMVAASG+ELLKSY+TLTASDA FFITG KL LE Sbjct: 207 SFLIAIPMMVAASGFELLKSYNTLTASDAVFFITGFLVAFVVALVAVITFLKL-----LE 261 Query: 253 RLKLAPFAYYRFVLAAVFLIYLI 275 R KLAPFAYYRF LAAVFL+YL+ Sbjct: 262 RFKLAPFAYYRFALAAVFLVYLL 284 >C3EI67.1 C3EI67_BACTK Undecaprenyl-diphosphatase Length = 263 Score = 218 bits (555), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 112/275 (40%), Positives = 156/275 (56%), Gaps = 12/275 (4%) Query: 1 MHDYXXXXXXXXXXXXTEFLPVSSTGHLILSGELLGFTGEKADTFEIIIQLGAILAVAVI 60 M D+ TEFLPVSSTGH+IL+G L+GF E+A FE++IQLG+ILAV V+ Sbjct: 1 MADWLIGLIMGAVEGLTEFLPVSSTGHMILTGHLIGFEDERAKVFEVVIQLGSILAVVVV 60 Query: 61 YWRRILGLLGLVKVDSENGNTNAKQKLNLIHVILACLPAMVLGLVLHSFIKTYLFSPYTV 120 +W+R+ L+G+ G LNL+H+I+ +PA VLG++ HS IK LF P V Sbjct: 61 FWKRLWSLVGI-------GKVKEGPSLNLLHIIIGMIPAGVLGVLFHSAIKKVLFGPGPV 113 Query: 121 XXXXXXXXXXXXXXQYKRTAIQAENIDQLSYKQAITIGLFQCLSLWPGFSRSXXXXXXXX 180 + A +D+++YKQA TIG+FQCL+LWPGFSRS Sbjct: 114 VISLVAGGILMIVAEKFSKPSTARTLDEITYKQAFTIGMFQCLALWPGFSRSGSTISGGL 173 Query: 181 XXXXXXXXXXNFSFLIAIPMMVAASGYELLKSYHTLTASDAGFFITGXXXXXXXXXXXXX 240 ++F++A+PMMVAA+G +L+KS+H L+++D F TG Sbjct: 174 LARVSHTAAAEYTFILAVPMMVAATGLDLIKSWHVLSSADVTLFATGFVTAFVVAMLAIV 233 Query: 241 XXXKLLXXXXLERLKLAPFAYYRFVLAAVFLIYLI 275 KL L R+KL PFAYYRF+LAAVF +++ Sbjct: 234 SFLKL-----LARVKLTPFAYYRFILAAVFYFFIM 263 >C3GYD7.1 C3GYD7_BACTU Undecaprenyl-diphosphatase Length = 263 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 113/275 (41%), Positives = 156/275 (56%), Gaps = 12/275 (4%) Query: 1 MHDYXXXXXXXXXXXXTEFLPVSSTGHLILSGELLGFTGEKADTFEIIIQLGAILAVAVI 60 M D+ TEFLPVSSTGH+IL+G L+GF E+A FE++IQLG+ILAV VI Sbjct: 1 MADWLIGLIMGAVEGLTEFLPVSSTGHMILTGHLIGFNDERAKVFEVVIQLGSILAVVVI 60 Query: 61 YWRRILGLLGLVKVDSENGNTNAKQKLNLIHVILACLPAMVLGLVLHSFIKTYLFSPYTV 120 +W+R+ L+G+ G LNL+H+I+ +PA VLG++ HS IK LF P V Sbjct: 61 FWKRLWSLVGI-------GKVTDGPSLNLLHIIIGMIPAGVLGVLFHSTIKEVLFGPGPV 113 Query: 121 XXXXXXXXXXXXXXQYKRTAIQAENIDQLSYKQAITIGLFQCLSLWPGFSRSXXXXXXXX 180 + A +D+++YKQA TIG+FQCL+LWPGFSRS Sbjct: 114 VISLVAGGILMIVAEKFSKPSTARTLDEITYKQAFTIGMFQCLALWPGFSRSGSTISGGL 173 Query: 181 XXXXXXXXXXNFSFLIAIPMMVAASGYELLKSYHTLTASDAGFFITGXXXXXXXXXXXXX 240 ++F++A+PMMVAASG +L+KS+ L+++D F+TG Sbjct: 174 LARVSHTAAAEYTFILAVPMMVAASGLDLIKSWDVLSSADITLFVTGFVTAFVVAMLAIV 233 Query: 241 XXXKLLXXXXLERLKLAPFAYYRFVLAAVFLIYLI 275 KL L R+KL PFAYYRF+LAAVF +++ Sbjct: 234 SFLKL-----LSRVKLTPFAYYRFILAAVFYFFIM 263 >B7HHD8.1 B7HHD8_BACC4 Bacitracin resistance protein EC=2.7.1.66 Length = 263 Score = 217 bits (553), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 113/275 (41%), Positives = 156/275 (56%), Gaps = 12/275 (4%) Query: 1 MHDYXXXXXXXXXXXXTEFLPVSSTGHLILSGELLGFTGEKADTFEIIIQLGAILAVAVI 60 M D+ TEFLPVSSTGH+IL+G L+GF E+A FE++IQLG+ILAV VI Sbjct: 1 MADWLIGLIMGAVEGLTEFLPVSSTGHMILTGHLIGFDDERAKVFEVVIQLGSILAVVVI 60 Query: 61 YWRRILGLLGLVKVDSENGNTNAKQKLNLIHVILACLPAMVLGLVLHSFIKTYLFSPYTV 120 +W+R+ L+G+ G LNL+H+I+ +PA VLG++ HS IK LF P V Sbjct: 61 FWKRLWSLVGI-------GKVTDGPSLNLLHIIIGMIPAGVLGVLFHSTIKEVLFGPGPV 113 Query: 121 XXXXXXXXXXXXXXQYKRTAIQAENIDQLSYKQAITIGLFQCLSLWPGFSRSXXXXXXXX 180 + A +D+++YKQA TIG+FQCL+LWPGFSRS Sbjct: 114 VISLVAGGILMIVAEKFSKPSTARTLDEITYKQAFTIGMFQCLALWPGFSRSGSTISGGL 173 Query: 181 XXXXXXXXXXNFSFLIAIPMMVAASGYELLKSYHTLTASDAGFFITGXXXXXXXXXXXXX 240 ++F++A+PMMVAASG +L+KS+ L+++D F+TG Sbjct: 174 LARVSHTAAAEYTFILAVPMMVAASGLDLIKSWDVLSSADITLFVTGFVTAFVVAMLAIV 233 Query: 241 XXXKLLXXXXLERLKLAPFAYYRFVLAAVFLIYLI 275 KL L R+KL PFAYYRF+LAAVF +++ Sbjct: 234 SFLKL-----LSRVKLTPFAYYRFILAAVFYFFIM 263 >B7IN76.1 B7IN76_BACC2 Bacitracin resistance protein EC=2.7.1.66 Length = 263 Score = 217 bits (553), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 113/275 (41%), Positives = 156/275 (56%), Gaps = 12/275 (4%) Query: 1 MHDYXXXXXXXXXXXXTEFLPVSSTGHLILSGELLGFTGEKADTFEIIIQLGAILAVAVI 60 M D+ TEFLPVSSTGH+IL+G L+GF E+A FE++IQLG+ILAV VI Sbjct: 1 MADWLIGLIMGAVEGLTEFLPVSSTGHMILTGHLIGFEDERAKVFEVVIQLGSILAVVVI 60 Query: 61 YWRRILGLLGLVKVDSENGNTNAKQKLNLIHVILACLPAMVLGLVLHSFIKTYLFSPYTV 120 +W+R+ L+G+ G LNL+H+I+ +PA VLG++ HS IK LF P V Sbjct: 61 FWKRLWSLVGI-------GKVTDGPSLNLLHIIIGMIPAGVLGVLFHSTIKEVLFGPGPV 113 Query: 121 XXXXXXXXXXXXXXQYKRTAIQAENIDQLSYKQAITIGLFQCLSLWPGFSRSXXXXXXXX 180 + A +D+++YKQA TIG+FQCL+LWPGFSRS Sbjct: 114 VISLVAGGILMIVAEKFSKPSTARTLDEITYKQAFTIGMFQCLALWPGFSRSGSTISGGL 173 Query: 181 XXXXXXXXXXNFSFLIAIPMMVAASGYELLKSYHTLTASDAGFFITGXXXXXXXXXXXXX 240 ++F++A+PMMVAASG +L+KS+ L+++D F+TG Sbjct: 174 LARVSHTAAAEYTFILAVPMMVAASGLDLIKSWDVLSSADITLFVTGFVTAFVVAMLAIV 233 Query: 241 XXXKLLXXXXLERLKLAPFAYYRFVLAAVFLIYLI 275 KL L R+KL PFAYYRF+LAAVF +++ Sbjct: 234 SFLKL-----LSRVKLTPFAYYRFILAAVFYFFIM 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.142 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,145,437,895 Number of extensions: 35733600 Number of successful extensions: 104572 Number of sequences better than 1.0e-05: 1490 Number of HSP's gapped: 100335 Number of HSP's successfully gapped: 1515 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)