BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0027.p (239 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z6K5.1 C0Z6K5_BREBN Probable ABC transporter ATP binding protein 166 1e-39 B1DIL8.1 B1DIL8_9BACL ABC transporter related 149 2e-34 A7Z3M0.1 A7Z3M0_BACA2 YjkB 114 6e-24 B5SGK8.1 B5SGK8_RALSO Atp-binding protein 112 3e-23 B5S9A3.1 B5S9A3_RALSO Atp-binding protein 110 8e-23 >C0Z6K5.1 C0Z6K5_BREBN Probable ABC transporter ATP binding protein Length = 250 Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 90/210 (42%), Positives = 114/210 (54%) Query: 23 SRYLFSRISAEISKPERVALIGASGQGKSTLLRILALLDIPDQGDLLLNGASFKNSNPRE 82 S +LF ++A I +P + ++G SGQGKSTLLRIL L PD G + L +PR Sbjct: 17 STWLFRDVNASIMEPTIIGILGKSGQGKSTLLRILGRLLQPDAGTVFLEKKEMSLWDPRA 76 Query: 83 WRMXXXXXXXXXXMLPGSIEDNLRTVSRLHGQPYDAALGAQLMEQLGLDHLDLAKKAEDC 142 WRM MLPGS+EDNLRTVS LH +P+D L + LMEQL ++ +D +K A Sbjct: 77 WRMKISYVAQQAVMLPGSVEDNLRTVSTLHQRPFDMKLASDLMEQLYMEEIDWSKPATQL 136 Query: 143 SGGEKQXXXXXXXXXXXXXXXXXDEATASLDIDSTRKVEALLLNRHKEEGITLIWVTHDP 202 SGGEKQ DE TASLD S + E LL++ H + G TLIWVTHD Sbjct: 137 SGGEKQRLALVRSLMLQPSVLLLDEVTASLDTKSKQAAERLLVDLHHQTGTTLIWVTHDL 196 Query: 203 EQAHRISNRTWAMDKGGMREYSTASYFEQS 232 E+A R W M + E + F S Sbjct: 197 EEARVACKRIWFMANHQLAEDTECEAFFHS 226 >B1DIL8.1 B1DIL8_9BACL ABC transporter related Length = 252 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/231 (37%), Positives = 124/231 (53%), Gaps = 8/231 (3%) Query: 3 AVFEIHNLAKFNWEAEAKGESRYLFSRISAEISKPERVALIGASGQGKSTLLRILALLDI 62 V ++ +AK ++ +LFS ++AE+ +R+ L+G SGQGKSTLLRIL+LL+ Sbjct: 2 TVLQVDEMAKSKFD----NRDEWLFSGVTAEVRPEDRIVLLGGSGQGKSTLLRILSLLEP 57 Query: 63 PDQGDLLLNGASFKNSNPREWRMXXXXXXXXXXMLPGSIEDNLRTVSRLHGQPYDAALGA 122 D G L L+G + P+ WR M G++ NLRTVS LH +P++ L Sbjct: 58 FDNGALRLDGQTTTECKPQSWRKKVTYVAQKPVMRSGTVAYNLRTVSELHNKPFEEELAR 117 Query: 123 QLMEQLGLDHLDLAKKAEDCSGGEKQXXXXXXXXXXXXXXXXXDEATASLDIDSTRKVEA 182 + ME +GL +D K+A D SGGE+Q DE T+SLD S R VE Sbjct: 118 RYMEAVGLGQMDWDKQALDLSGGEQQRLALVRSLLLHPELLLLDEITSSLDPASKRSVEK 177 Query: 183 LLLN--RHKEEGI--TLIWVTHDPEQAHRISNRTWAMDKGGMREYSTASYF 229 LL+ + +G+ +W+THD +QA ISN+ W M +G + E S F Sbjct: 178 LLMGWVSRRADGLERAYLWITHDLDQARLISNQVWFMAEGSLLERSATEMF 228 >A7Z3M0.1 A7Z3M0_BACA2 YjkB Length = 249 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 67/208 (32%), Positives = 113/208 (54%), Gaps = 5/208 (2%) Query: 26 LFSRISAEISKPERVALIGASGQGKSTLLRILALLDIPDQGDLLLNGASFKNSNPREWRM 85 + SR++ I K ALIG SG GKSTLL + L++ PD+G++L+ G ++ + RE R Sbjct: 30 VLSRVTGHIQKGSITALIGPSGAGKSTLLSLCNLMNTPDEGEVLVFGKEIRHWDIRELRK 89 Query: 86 XXXXXXXXXXMLPGSIEDNLRTVSRLHG-QPYDAALGAQLMEQLGLDHLDLAKKAEDCSG 144 +L G++ DNL +LHG Q Y +L + L + L + A++ SG Sbjct: 90 TAGLAFQSAPVLEGTVRDNLLLAEKLHGAQHYTP---EELADFTDLPRVLLDRNAKELSG 146 Query: 145 GEKQXXXXXXXXXXXXXXXXXDEATASLDIDSTRKVEALLLNRHKEEGITLIWVTHDPEQ 204 G++Q DE T++LD S +E L+ H+++ +T++W+TH+ EQ Sbjct: 147 GQRQKLSLARTLAGLPSILLLDEITSALDPSSVLIIEKLITKLHRQKQLTVLWITHNLEQ 206 Query: 205 AHRISNRTWAMDKGGMREYS-TASYFEQ 231 A R+S+ W M +G + E + T ++F++ Sbjct: 207 AERLSDTVWFMAEGRLLETAETKTFFKE 234 >B5SGK8.1 B5SGK8_RALSO Atp-binding protein Length = 230 Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/193 (37%), Positives = 95/193 (49%), Gaps = 6/193 (3%) Query: 38 ERVALIGASGQGKSTLLRILALLDIPDQGDLLLNGASFKNSNPREWRMXXXXXXXXXXML 97 ER+AL G SG GKS LLR LALLD D G + G + + +R +L Sbjct: 30 ERIALTGPSGAGKSVLLRALALLDPLDDGHVTWRGETVSAAGVPAFRCEVAYVRQRPALL 89 Query: 98 PGSIEDNLRTVSRLH----GQPYDAALGAQLMEQLGLDHLDLAKKAEDCSGGEKQXXXXX 153 PGS+EDNLR RLH G +D L+ + D L K A D SGGE Q Sbjct: 90 PGSVEDNLRLPYRLHIRKTGTGFDRDAAIALLARADRDARFLDKHATDLSGGEAQIAALV 149 Query: 154 XXXXXXXXXXXXDEATASLDIDSTRKVEALLLN--RHKEEGITLIWVTHDPEQAHRISNR 211 DE TA+LD S R +EA+LL+ E +W+THDP QA RI++R Sbjct: 150 RTLQTEPAILLLDEPTAALDPASARAIEAMLLHWFAQAPERRAWVWITHDPSQAARIASR 209 Query: 212 TWAMDKGGMREYS 224 W ++ G + ++ Sbjct: 210 HWRVEAGRLDTHA 222 >B5S9A3.1 B5S9A3_RALSO Atp-binding protein Length = 230 Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 93/189 (49%), Gaps = 6/189 (3%) Query: 38 ERVALIGASGQGKSTLLRILALLDIPDQGDLLLNGASFKNSNPREWRMXXXXXXXXXXML 97 +R+AL G SG GKS LLR LALLD D G + G + + +R +L Sbjct: 30 DRIALTGPSGAGKSVLLRALALLDPLDDGHVTWRGETVSAAGVPAFRCEVAYVRQRPALL 89 Query: 98 PGSIEDNLRTVSRLH----GQPYDAALGAQLMEQLGLDHLDLAKKAEDCSGGEKQXXXXX 153 PGS+EDNLR RLH G +D L+ + D L K A D SGGE Q Sbjct: 90 PGSVEDNLRLPYRLHIRKTGTGFDRNAAIALLARADRDARFLDKHATDLSGGEAQIAALV 149 Query: 154 XXXXXXXXXXXXDEATASLDIDSTRKVEALLLN--RHKEEGITLIWVTHDPEQAHRISNR 211 DE TA+LD S R +EA+LL+ E +W+THDP QA RI++R Sbjct: 150 RTLQTEPAILLLDEPTAALDPASARAIEAMLLHWFAQAPERRAWVWITHDPSQAARIASR 209 Query: 212 TWAMDKGGM 220 W ++ G + Sbjct: 210 HWRVEAGRL 218 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,246,942,139 Number of extensions: 43230819 Number of successful extensions: 331501 Number of sequences better than 1.0e-05: 22347 Number of HSP's gapped: 331949 Number of HSP's successfully gapped: 22490 Length of query: 239 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 107 Effective length of database: 1,817,122,223 Effective search space: 194432077861 Effective search space used: 194432077861 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)