BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0026.p (253 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIL7.1 B1DIL7_9BACL Putative uncharacterized protein 255 2e-66 C0Z6K6.1 C0Z6K6_BREBN Conserved hypothetical membrane protein 246 1e-63 B1HTS5.1 B1HTS5_LYSSC UPF0014 inner membrane protein 214 8e-54 A3I495.1 A3I495_9BACI Putative uncharacterized protein 213 1e-53 B0K263.1 B0K263_THEPX Putative uncharacterized protein 211 4e-53 >B1DIL7.1 B1DIL7_9BACL Putative uncharacterized protein Length = 254 Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 132/249 (53%), Positives = 172/249 (69%), Gaps = 1/249 (0%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 M AL TL FV L+S+ QKLGLE++I +GTIRSAVQLL +GYVL F+F+ H Sbjct: 1 MNNIALLCTLCFVAVAALISMKQKLGLEREILIGTIRSAVQLLFIGYVLHFVFETSHPAF 60 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 ASWNA + K + G+ RIA+A++ E + PQYIIP Sbjct: 61 IIIIIVCMIMVASWNAGAKAKHVRGIRSRIAIALACTEGGTMAILLGLGIIEPTPQYIIP 120 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 +SG+ IGS+M+V GL +N +K EM+ +GE+E LL+LGAT +QA+ R+V+ SMIPT Sbjct: 121 VSGIIIGSSMIVCGLLLNQMKREMETARGEMEMLLALGATEKQAVHGSLRRSVRASMIPT 180 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 +DGMKTVGLVQLPGMMTGMI+AGADP+ AVRYQILI+F +SAA+T+M+LS++ YRL+F Sbjct: 181 LDGMKTVGLVQLPGMMTGMIVAGADPIEAVRYQILIMFVLASSAAMTAMVLSLISYRLWF 240 Query: 241 TADLRLKLP 249 T D RL LP Sbjct: 241 TKDARL-LP 248 >C0Z6K6.1 C0Z6K6_BREBN Conserved hypothetical membrane protein Length = 254 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 128/238 (53%), Positives = 169/238 (71%) Query: 6 LSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXXXXXXX 65 L F FV +L+S+WQKLGLEKDI +GTIRS VQLLA+GYVL F+F A+ Sbjct: 12 LLFAYAFVFIALLLSVWQKLGLEKDILIGTIRSTVQLLAIGYVLHFVFAADSVWFILLII 71 Query: 66 XXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIPISGMT 125 ASWNAA R K L G+ WRI+++++ + PQY+IP+SGM Sbjct: 72 LMMILVASWNAASRAKQLTGIFWRISLSLAITQIITMGLLVILGLVSPTPQYLIPMSGMI 131 Query: 126 IGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPTIDGMK 185 IGS+M+V+ LF+ H+ E++ ++GEIETLL LGAT +QA+ V RAVK SMIPT D MK Sbjct: 132 IGSSMIVTSLFLTHMNREVEASRGEIETLLCLGATTRQAVHVVLKRAVKASMIPTFDTMK 191 Query: 186 TVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFFTAD 243 T+GLVQLPGMMTGMI+AGA P+ AVRYQILI+ SF++SAA++++L+S+L Y+L+FT D Sbjct: 192 TIGLVQLPGMMTGMIVAGASPIEAVRYQILIMLSFSSSAAISAVLISMLSYQLWFTRD 249 >B1HTS5.1 B1HTS5_LYSSC UPF0014 inner membrane protein Length = 250 Score = 214 bits (544), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 110/246 (44%), Positives = 159/246 (64%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 MT T+LS TL+FV +L+S KLGLEKD + T+RS VQLLAVGY+L+F+F A Sbjct: 1 MTYTSLSLTLIFVCIPLLLSKTLKLGLEKDTLIATLRSIVQLLAVGYILKFVFDANSYMY 60 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 A++NA K+G+G+ G+ W+IA+ + +E A QYIIP Sbjct: 61 IFLMVALMILVATFNARKKGEGIKGITWKIALTLVIIEIITQGVLLGFNIVPATAQYIIP 120 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 ISGM IG++MV+S LF+N E+ +K ++E +LSLG T +QA+ + AVK SMIPT Sbjct: 121 ISGMLIGNSMVLSILFLNRFTAEITSHKDQMELILSLGGTPKQAVHRQLINAVKASMIPT 180 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 I+ KT+GLVQLPGMM+G II GADP+ AV++Q+LI+F+ +A ++S+++ L Y F Sbjct: 181 IESQKTIGLVQLPGMMSGQIIGGADPIQAVQFQLLIIFALLTTATLSSIMIGFLSYPALF 240 Query: 241 TADLRL 246 +++ Sbjct: 241 NERMQI 246 >A3I495.1 A3I495_9BACI Putative uncharacterized protein Length = 250 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 109/246 (44%), Positives = 159/246 (64%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 MT T+LS TL+FV +L+S KLGLEKD + T+RS VQLLAVGY+L+F+F A Sbjct: 1 MTYTSLSLTLIFVCIPLLLSKTLKLGLEKDTLIATLRSIVQLLAVGYILKFVFDANSYVY 60 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 A++NA K+G+G+ G+ W+IA+ + +E A QYIIP Sbjct: 61 IFLMVALMILVATFNARKKGEGIKGITWKIALTLVMIEIITQGVLLGFNIVPATAQYIIP 120 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 ISGM IG++MV+S LF+N E+ +K ++E +LSLG T +QA+ + A+K SMIPT Sbjct: 121 ISGMLIGNSMVLSILFLNRFTAEITSHKDQMELILSLGGTPKQAVHRQLINAIKASMIPT 180 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 I+ KT+GLVQLPGMM+G II GADP+ AV++Q+LI+F+ +A ++S+++ L Y F Sbjct: 181 IESQKTIGLVQLPGMMSGQIIGGADPIQAVQFQLLIIFALLTTATLSSIMIGFLSYPALF 240 Query: 241 TADLRL 246 +++ Sbjct: 241 NERMQI 246 >B0K263.1 B0K263_THEPX Putative uncharacterized protein Length = 251 Score = 211 bits (538), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 105/241 (43%), Positives = 153/241 (63%) Query: 1 MTLTALSFTLLFVMGTMLVSIWQKLGLEKDIAVGTIRSAVQLLAVGYVLQFIFQAEHXXX 60 M++ +L+ V+ ++ VS +QKLG+EK+I +GTIR+ VQL VGY+L +IF A++ Sbjct: 1 MSVLSLTLASSLVLISIFVSYYQKLGIEKEIVIGTIRAVVQLTIVGYILHYIFAADNALF 60 Query: 61 XXXXXXXXXXXASWNAAKRGKGLPGLVWRIAVAISAMEXXXXXXXXXXXXXKANPQYIIP 120 A NA+KRGKG+P + + I +I+ PQ +IP Sbjct: 61 TLAMVSLMIVVAGNNASKRGKGIPNVFYFITFSIALSAAITISLLILFGNIHFRPQEVIP 120 Query: 121 ISGMTIGSAMVVSGLFINHLKHEMQQNKGEIETLLSLGATAQQAMQKVRARAVKFSMIPT 180 +SGM IG++MV SGL ++ LK E++ EIE LSLGAT++QA QKV A+K MIPT Sbjct: 121 VSGMIIGNSMVASGLAVSRLKDEIKNKSEEIEAYLSLGATSRQAAQKVIKTAIKTGMIPT 180 Query: 181 IDGMKTVGLVQLPGMMTGMIIAGADPVIAVRYQILIVFSFTASAAVTSMLLSVLIYRLFF 240 +D MKT+G+VQLPGMMTG+I+ G DP+ AV+YQI++ F ++ A++ ++ L YR FF Sbjct: 181 VDSMKTLGIVQLPGMMTGLILGGVDPIEAVKYQIMVTFMLASTVAISCFSVTFLTYRNFF 240 Query: 241 T 241 T Sbjct: 241 T 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.137 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,122,033,437 Number of extensions: 33846865 Number of successful extensions: 127617 Number of sequences better than 1.0e-05: 568 Number of HSP's gapped: 127188 Number of HSP's successfully gapped: 569 Length of query: 253 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 120 Effective length of database: 1,807,701,208 Effective search space: 216924144960 Effective search space used: 216924144960 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)