BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0017.p
         (96 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DIB1.1 B1DIB1_9BACL Putative uncharacterized protein                 57   4e-07

>B1DIB1.1 B1DIB1_9BACL Putative uncharacterized protein
          Length = 83

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 40/65 (61%)

Query: 14 NMLGIHQRLAELYMLSCQRALTSEEETEQRHCLQANAMYCWEMARLNNEARLAADTDDAQ 73
           +L IH+RLAEL+ +   R LT EE+ +  HCL  NAM+  ++A L N +  A+ T D  
Sbjct: 2  TILPIHERLAELWTIRGGRHLTEEEQADFEHCLAVNAMHIRQIANLYNLSLAASMTGDVD 61

Query: 74 WQQEI 78
          WQ EI
Sbjct: 62 WQHEI 66


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.127    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 488,809,345
Number of extensions: 14600758
Number of successful extensions: 35954
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 35954
Number of HSP's successfully gapped: 1
Length of query: 96
Length of database: 3,060,696,203
Length adjustment: 65
Effective length of query: 31
Effective length of database: 2,448,330,228
Effective search space: 75898237068
Effective search space used: 75898237068
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)