BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0016.p (281 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q71WZ2.1 Q71WZ2_LISMF Transcription antiterminator LicT 329 1e-88 C1KY74.1 C1KY74_LISMC Putative transcription antiterminator 329 1e-88 Q928K2.1 Q928K2_LISIN Lin2530 protein 328 3e-88 A0ALC5.1 A0ALC5_LISW6 LicT protein 328 3e-88 Q8Y4K2.1 Q8Y4K2_LISMO Lmo2436 protein 327 1e-87 >Q71WZ2.1 Q71WZ2_LISMF Transcription antiterminator LicT Length = 284 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 156/280 (55%), Positives = 212/280 (75%) Query: 1 MIIEKXXXXXXXXTKNQKGKEVIVMGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLT 60 MII+K + + GKE +VMGRG++F K GD V+ KI+K F++ +E + +L+ Sbjct: 1 MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKIEKTFVMETHELSEKLS 60 Query: 61 ELLNDIPVAHLELANEIVTYANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLF 120 ELL++IP+ HL +A+++V YA L T+LSDN+YLTLTDHI+FAV R+ +GI LKNA+L+ Sbjct: 61 ELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLW 120 Query: 121 EIKRFYKKEFSIGMDALQFIEKATGFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIV 180 EIKRFY E+ +GM AL FIE+ G L EDEAGFIALH+VNAR DG +M T+ MT+IV Sbjct: 121 EIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIV 180 Query: 181 QNILNIITYHYKVVLDESSLNYSRFLTHLQYFSMRVLKKETSNSGEDFLYNQVKQTYVKA 240 Q+IL+I+TYHY +VLDE+SLNY+RF+THLQYF+ R+L+KE +SG+DFLY QV+ Y +A Sbjct: 181 QDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA 240 Query: 241 FECASKINDYLEKAYAQSLGKDEYVYLTIHIQRVTERHSL 280 F+C KI+ YL + L +DE VYLTIHI RVTER+++ Sbjct: 241 FKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTERNTI 280 >C1KY74.1 C1KY74_LISMC Putative transcription antiterminator Length = 284 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 156/280 (55%), Positives = 212/280 (75%) Query: 1 MIIEKXXXXXXXXTKNQKGKEVIVMGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLT 60 MII+K + + GKE +VMGRG++F K GD V+ KI+K F++ +E + +L+ Sbjct: 1 MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKIEKTFVMETHELSEKLS 60 Query: 61 ELLNDIPVAHLELANEIVTYANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLF 120 ELL++IP+ HL +A+++V YA L T+LSDN+YLTLTDHI+FAV R+ +GI LKNA+L+ Sbjct: 61 ELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLW 120 Query: 121 EIKRFYKKEFSIGMDALQFIEKATGFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIV 180 EIKRFY E+ +GM AL FIE+ G L EDEAGFIALH+VNAR DG +M T+ MT+IV Sbjct: 121 EIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIV 180 Query: 181 QNILNIITYHYKVVLDESSLNYSRFLTHLQYFSMRVLKKETSNSGEDFLYNQVKQTYVKA 240 Q+IL+I+TYHY +VLDE+SLNY+RF+THLQYF+ R+L+KE +SG+DFLY QV+ Y +A Sbjct: 181 QDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA 240 Query: 241 FECASKINDYLEKAYAQSLGKDEYVYLTIHIQRVTERHSL 280 F+C KI+ YL + L +DE VYLTIHI RVTER+++ Sbjct: 241 FKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTERNTI 280 >Q928K2.1 Q928K2_LISIN Lin2530 protein Length = 285 Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 156/280 (55%), Positives = 210/280 (75%) Query: 1 MIIEKXXXXXXXXTKNQKGKEVIVMGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLT 60 MII+K + + GKE +VMGRG++F K GD V+ KI+K F++ +E + +L+ Sbjct: 1 MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKIEKTFVMETHELSEKLS 60 Query: 61 ELLNDIPVAHLELANEIVTYANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLF 120 ELL++IP+ HL +A+++V YA L T+LSDN+YLTLTDHI+FAV R+ +GI LKNA+L+ Sbjct: 61 ELLSEIPLKHLRIADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLW 120 Query: 121 EIKRFYKKEFSIGMDALQFIEKATGFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIV 180 EIKRFY E+ +GM AL FIEK G L EDEAGFIALH+VNAR DG +M T+ MT+IV Sbjct: 121 EIKRFYHAEYLVGMKALDFIEKEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIV 180 Query: 181 QNILNIITYHYKVVLDESSLNYSRFLTHLQYFSMRVLKKETSNSGEDFLYNQVKQTYVKA 240 Q+IL+I+TYHY +VLDE+SLNY+RF+THLQYF+ R+L+KE +SG+DFLY QV+ Y +A Sbjct: 181 QDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA 240 Query: 241 FECASKINDYLEKAYAQSLGKDEYVYLTIHIQRVTERHSL 280 F C KI+ YL + L +DE VYL IHI RVTER+++ Sbjct: 241 FNCTKKIDAYLINTHHTELTRDERVYLAIHIYRVTERNTI 280 >A0ALC5.1 A0ALC5_LISW6 LicT protein Length = 285 Score = 328 bits (842), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 156/280 (55%), Positives = 211/280 (75%) Query: 1 MIIEKXXXXXXXXTKNQKGKEVIVMGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLT 60 MII+K + + GKE +VMGRG++F K GD V+ KI+K F++ +E + +L+ Sbjct: 1 MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVPKIEKTFVMETHELSEKLS 60 Query: 61 ELLNDIPVAHLELANEIVTYANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLF 120 ELL++IP+ HL +A+++V YA L T+LSDN+YLTLTDHI+FAV R+ +GI LKNA+L+ Sbjct: 61 ELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLW 120 Query: 121 EIKRFYKKEFSIGMDALQFIEKATGFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIV 180 EIKRFY E+ +GM AL FIE+ G L EDEAGFIALH+VNAR DG +M T+ MT+IV Sbjct: 121 EIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIV 180 Query: 181 QNILNIITYHYKVVLDESSLNYSRFLTHLQYFSMRVLKKETSNSGEDFLYNQVKQTYVKA 240 Q+IL+I+TYHY +VLDE+SLNY+RF+THLQYF+ R+L+KE +SG+DFLY QV+ Y +A Sbjct: 181 QDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA 240 Query: 241 FECASKINDYLEKAYAQSLGKDEYVYLTIHIQRVTERHSL 280 F C KI+ YL + L +DE VYLTIHI RVTER+++ Sbjct: 241 FNCTKKIDAYLLNTHHTELTRDERVYLTIHIYRVTERNTI 280 >Q8Y4K2.1 Q8Y4K2_LISMO Lmo2436 protein Length = 285 Score = 327 bits (837), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 155/280 (55%), Positives = 211/280 (75%) Query: 1 MIIEKXXXXXXXXTKNQKGKEVIVMGRGISFNKVAGDYVDPDKIDKVFLLNENEFTARLT 60 MII+K + + GKE +VMGRG++F K GD V+ I+K F++ +E + +L+ Sbjct: 1 MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKIGDEVEVANIEKTFVMETHELSEKLS 60 Query: 61 ELLNDIPVAHLELANEIVTYANGILGTELSDNLYLTLTDHIHFAVQRFEKGITLKNAMLF 120 ELL++IP+ HL +A+++V YA L T+LSDN+YLTLTDHI+FAV R+ +GI LKNA+L+ Sbjct: 61 ELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHINFAVSRYNQGINLKNALLW 120 Query: 121 EIKRFYKKEFSIGMDALQFIEKATGFALGEDEAGFIALHLVNARMDGNEMKSTIKMTEIV 180 EIKRFY E+ +GM AL FIE+ G L EDEAGFIALH+VNAR DG +M T+ MT+IV Sbjct: 121 EIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHIVNARQDGQQMHMTVAMTQIV 180 Query: 181 QNILNIITYHYKVVLDESSLNYSRFLTHLQYFSMRVLKKETSNSGEDFLYNQVKQTYVKA 240 Q+IL+I+TYHY +VLDE+SLNY+RF+THLQYF+ R+L+KE +SG+DFLY QV+ Y +A Sbjct: 181 QDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLRKEIVDSGDDFLYEQVQIKYPEA 240 Query: 241 FECASKINDYLEKAYAQSLGKDEYVYLTIHIQRVTERHSL 280 F+C KI+ YL + L +DE VYLTIHI RVTER+++ Sbjct: 241 FKCTKKIDAYLINTHHTELTRDERVYLTIHIYRVTERNTI 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,493,543,554 Number of extensions: 59548020 Number of successful extensions: 156666 Number of sequences better than 1.0e-05: 777 Number of HSP's gapped: 155224 Number of HSP's successfully gapped: 780 Length of query: 281 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 147 Effective length of database: 1,798,280,193 Effective search space: 264347188371 Effective search space used: 264347188371 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)