BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0008.p (275 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBK5.1 B3KBK5_9BACI Undecaprenol kinase EC=3.6.1.27 417 e-115 C2PQC4.1 C2PQC4_BACCE Undecaprenyl-diphosphatase 255 4e-66 C2XNJ9.1 C2XNJ9_BACCE Undecaprenyl-diphosphatase 253 1e-65 C2SYB4.1 C2SYB4_BACCE Undecaprenyl-diphosphatase 251 7e-65 Q81G27.1 UPPP2_BACCR Undecaprenyl-diphosphatase 2 EC=3.6.1.27 251 7e-65 >B3KBK5.1 B3KBK5_9BACI Undecaprenol kinase EC=3.6.1.27 Length = 274 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/275 (76%), Positives = 237/275 (86%), Gaps = 1/275 (0%) Query: 1 MDTITAIILAIVEGITEFIPVSSTGHMILTTKLLGFDEQSPIMKTYEIVIQLGAILAIAL 60 MD IT+IIL IVEG+TEFIPVSSTGHMILT K+LG+D+Q+PIMKT+E+VIQLGAILAIA+ Sbjct: 1 MDFITSIILGIVEGLTEFIPVSSTGHMILTAKVLGYDDQTPIMKTFEVVIQLGAILAIAI 60 Query: 61 VYRQRILNLLGIGRSRTGRGGVVPASRLNLIHVILGIVPALAVAFFARDFIKGLFGASTV 120 VY RILNLLG RS V P RLNL+H+ LGI PAL VAFFARDFIK LF A TV Sbjct: 61 VYWNRILNLLGWSRSEPLTRKV-PRRRLNLMHIFLGIAPALLVAFFARDFIKSLFHAQTV 119 Query: 121 LWALVAGGVLMIVAEWVNRRKIRITAHELDDLSYGQALAIGLYQIISVLWPGFSRSGSTI 180 L+ALVAGG+ MI AEW N+ K+++T+H++DDL+Y QA IG+YQIISVLWPGFSRSGSTI Sbjct: 120 LFALVAGGIFMIFAEWYNKHKVQVTSHDMDDLTYKQAFLIGIYQIISVLWPGFSRSGSTI 179 Query: 181 SGGMLSGVSYKASADFSFLIAIPIMCAASGYELLDSYQYFTKDTIMDFAIGFVISFIVAY 240 SGGMLSGVSYKASADFSF+IAIPIMCAASGYELLDSY+YFT DTI F GF++SF+VAY Sbjct: 180 SGGMLSGVSYKASADFSFIIAIPIMCAASGYELLDSYRYFTLDTIGVFLAGFIVSFVVAY 239 Query: 241 LVVVAFMKLIQKIRPTHFAIYRFILAAVFWLFIMR 275 VV+AFMKLIQKIR THFAIYRF LAAVFWLFIM Sbjct: 240 FVVLAFMKLIQKIRLTHFAIYRFGLAAVFWLFIMH 274 >C2PQC4.1 C2PQC4_BACCE Undecaprenyl-diphosphatase Length = 265 Score = 255 bits (651), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 143/274 (52%), Positives = 191/274 (69%), Gaps = 13/274 (4%) Query: 2 DTITAIILAIVEGITEFIPVSSTGHMILTTKLLGFDEQSPIMKTYEIVIQLGAILAIALV 61 D I A IL IVEG+ EF+P+SSTGH+IL LLGF+ + KT+EIVIQLGAILAIA++ Sbjct: 3 DLIIAFILGIVEGLAEFLPISSTGHLILVGHLLGFEGERA--KTFEIVIQLGAILAIAIL 60 Query: 62 YRQRILNLLGIGRSRTGRGGVVPASRLNLIHVILGIVPALAVAFFARDFIKG-LFGASTV 120 Y +R+++L I + + + N +HV LG+ PA+ V D IK LF TV Sbjct: 61 YHKRLVSLCNI------KPLLRKEKKFNALHVFLGVFPAVVVGLLLHDVIKAYLFQPYTV 114 Query: 121 LWALVAGGVLMIVAEWVNRRKIRITAHELDDLSYGQALAIGLYQIISVLWPGFSRSGSTI 180 + LVAG LMI AE +K +TA LDDL+Y QAL IGL+Q ++V +PGFSR+GSTI Sbjct: 115 VIGLVAGAFLMIFAE---AKKAELTAFSLDDLTYRQALTIGLFQCLAV-YPGFSRAGSTI 170 Query: 181 SGGMLSGVSYKASADFSFLIAIPIMCAASGYELLDSYQYFTKDTIMDFAIGFVISFIVAY 240 SGG+L+ V+YKA+++FSFLIA+P+M A+G +LL S++Y + D I FAIGF+ SFIVA Sbjct: 171 SGGLLAKVNYKAASEFSFLIALPVMAGATGLDLLKSWKYLSADDIPMFAIGFITSFIVAM 230 Query: 241 LVVVAFMKLIQKIRPTHFAIYRFILAAVFWLFIM 274 L VV F+KL++KI FA YR +LA VF LF++ Sbjct: 231 LAVVTFLKLLEKIGLKPFAYYRILLAIVFTLFVL 264 >C2XNJ9.1 C2XNJ9_BACCE Undecaprenyl-diphosphatase Length = 265 Score = 253 bits (646), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 142/274 (51%), Positives = 192/274 (70%), Gaps = 13/274 (4%) Query: 2 DTITAIILAIVEGITEFIPVSSTGHMILTTKLLGFDEQSPIMKTYEIVIQLGAILAIALV 61 D I A IL IVEG+ EF+P+SSTGH+IL LLGF+ + KT+EIVIQLGAILAIA++ Sbjct: 3 DLIIAFILGIVEGLAEFLPISSTGHLILVGHLLGFEGERA--KTFEIVIQLGAILAIAIL 60 Query: 62 YRQRILNLLGIGRSRTGRGGVVPASRLNLIHVILGIVPALAVAFFARDFIKG-LFGASTV 120 Y +R+++L I + + + N +HV LG+ PA+ V D IK LF TV Sbjct: 61 YHKRLVSLCNI------KPLLRKEKKFNALHVFLGVFPAVVVGLLLHDVIKTYLFQPYTV 114 Query: 121 LWALVAGGVLMIVAEWVNRRKIRITAHELDDLSYGQALAIGLYQIISVLWPGFSRSGSTI 180 + LVAG +LMI AE +K +TA LDDL+Y QAL IGL+Q ++V +PGFSR+GSTI Sbjct: 115 VIGLVAGAILMIFAEV---KKAEVTAFSLDDLTYRQALTIGLFQCLAV-YPGFSRAGSTI 170 Query: 181 SGGMLSGVSYKASADFSFLIAIPIMCAASGYELLDSYQYFTKDTIMDFAIGFVISFIVAY 240 SGG+L+ V+YKA+++FSFLIA+P+M A+G +LL S++Y + D I FAIGF+ SFIVA Sbjct: 171 SGGLLAKVNYKAASEFSFLIALPVMVGATGLDLLKSWKYLSVDDIPMFAIGFITSFIVAM 230 Query: 241 LVVVAFMKLIQKIRPTHFAIYRFILAAVFWLFIM 274 L VV F+KL++KI FA YR +LA +F LF++ Sbjct: 231 LAVVTFLKLLEKIGLKPFAYYRILLAILFTLFVL 264 >C2SYB4.1 C2SYB4_BACCE Undecaprenyl-diphosphatase Length = 263 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 133/274 (48%), Positives = 196/274 (71%), Gaps = 14/274 (5%) Query: 2 DTITAIILAIVEGITEFIPVSSTGHMILTTKLLGFDEQSPIMKTYEIVIQLGAILAIALV 61 D + +I+ VEG+TEF+PVSSTGHMILT L+GFD++ K +E+VIQLG+ILA+ ++ Sbjct: 3 DWLIGLIMGAVEGLTEFLPVSSTGHMILTGHLIGFDDERA--KVFEVVIQLGSILAVVVI 60 Query: 62 YRQRILNLLGIGRSRTGRGGVVPASRLNLIHVILGIVPALAVAFFARDFIK-GLFGASTV 120 + +R+ +L+GIG+ G LNL+H+I+G++PA + IK GLFG V Sbjct: 61 FWKRLWSLVGIGKVTDG-------PSLNLLHIIIGMIPAGVLGVLFHSTIKEGLFGPGPV 113 Query: 121 LWALVAGGVLMIVAEWVNRRKIRITAHELDDLSYGQALAIGLYQIISVLWPGFSRSGSTI 180 + +LVAGG+LMIVAE ++ TA LD+++Y QA IG++Q ++ LWPGFSRSGSTI Sbjct: 114 VISLVAGGILMIVAEKFSKPS---TARTLDEITYKQAFTIGMFQCLA-LWPGFSRSGSTI 169 Query: 181 SGGMLSGVSYKASADFSFLIAIPIMCAASGYELLDSYQYFTKDTIMDFAIGFVISFIVAY 240 SGG+L+ VS+ A+A+++F++A+P+M AASG +L+ S+ + I F GFV +F+VA Sbjct: 170 SGGLLARVSHTAAAEYTFILAVPMMVAASGLDLIKSWDVLSSADITLFVTGFVTAFVVAM 229 Query: 241 LVVVAFMKLIQKIRPTHFAIYRFILAAVFWLFIM 274 L +V+F+KL+ +++ T FA YRFILAAVF+ FIM Sbjct: 230 LAIVSFLKLLSRVKLTPFAYYRFILAAVFYFFIM 263 >Q81G27.1 UPPP2_BACCR Undecaprenyl-diphosphatase 2 EC=3.6.1.27 Length = 263 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 133/274 (48%), Positives = 196/274 (71%), Gaps = 14/274 (5%) Query: 2 DTITAIILAIVEGITEFIPVSSTGHMILTTKLLGFDEQSPIMKTYEIVIQLGAILAIALV 61 D + +I+ VEG+TEF+PVSSTGHMILT L+GFD++ K +E+VIQLG+ILA+ ++ Sbjct: 3 DWLIGLIMGAVEGLTEFLPVSSTGHMILTGHLIGFDDERA--KVFEVVIQLGSILAVVVI 60 Query: 62 YRQRILNLLGIGRSRTGRGGVVPASRLNLIHVILGIVPALAVAFFARDFIK-GLFGASTV 120 + +R+ +L+GIG+ G LNL+H+I+G++PA + IK GLFG V Sbjct: 61 FWKRLWSLVGIGKVTDG-------PSLNLLHIIIGMIPAGVLGVLFHSTIKEGLFGPGPV 113 Query: 121 LWALVAGGVLMIVAEWVNRRKIRITAHELDDLSYGQALAIGLYQIISVLWPGFSRSGSTI 180 + +LVAGG+LMIVAE ++ TA LD+++Y QA IG++Q ++ LWPGFSRSGSTI Sbjct: 114 VISLVAGGILMIVAEKFSKPS---TARTLDEITYKQAFTIGMFQCLA-LWPGFSRSGSTI 169 Query: 181 SGGMLSGVSYKASADFSFLIAIPIMCAASGYELLDSYQYFTKDTIMDFAIGFVISFIVAY 240 SGG+L+ VS+ A+A+++F++A+P+M AASG +L+ S+ + I F GFV +F+VA Sbjct: 170 SGGLLARVSHTAAAEYTFILAVPMMVAASGLDLIKSWDVLSSADITLFVTGFVTAFVVAM 229 Query: 241 LVVVAFMKLIQKIRPTHFAIYRFILAAVFWLFIM 274 L +V+F+KL+ +++ T FA YRFILAAVF+ FIM Sbjct: 230 LAIVSFLKLLSRVKLTPFAYYRFILAAVFYFFIM 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.144 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,535,713,733 Number of extensions: 61544945 Number of successful extensions: 252821 Number of sequences better than 1.0e-05: 1654 Number of HSP's gapped: 248143 Number of HSP's successfully gapped: 1661 Length of query: 275 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 141 Effective length of database: 1,798,280,193 Effective search space: 253557507213 Effective search space used: 253557507213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)