BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0157.0005.p (338 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBK9.1 B3KBK9_9BACI Radical SAM domain protein 511 e-143 B1DKG0.1 B1DKG0_9BACL Radical SAM domain protein 460 e-127 C0ZBI1.1 C0ZBI1_BREBN Putative uncharacterized protein 397 e-109 A8VRK3.1 A8VRK3_9BACI Fe-S oxidoreductase-like protein 370 e-101 B1YK38.1 B1YK38_EXIS2 YfkB-like domain protein 362 3e-98 >B3KBK9.1 B3KBK9_9BACI Radical SAM domain protein Length = 379 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 240/321 (74%), Positives = 268/321 (83%) Query: 1 VLTSVEMTVTNLCNMRCEHCAVGDSLTTKEGDMLPLKNMLDRLEEVEHLQTISITGGEPM 60 VLTSVEMTVT+LCNMRCEHCAVGD L KE MLPL ML RL+EVEHLQTIS+TGGEP Sbjct: 35 VLTSVEMTVTHLCNMRCEHCAVGDMLVMKEAPMLPLDTMLKRLDEVEHLQTISLTGGEPA 94 Query: 61 FRAGTVEKTIVPLLKYARERGIRSQINSNLTMPYSRYEQLLPYLDVMHISFNYVNGDDFH 120 F TV+ IVPLLKYA+ERGIR+QINSNLT+ RYE++LPYLDVMHISFNY+NGDDF+ Sbjct: 95 FLGKTVDNVIVPLLKYAKERGIRTQINSNLTLDIGRYEKMLPYLDVMHISFNYLNGDDFY 154 Query: 121 EVGFANSGHPVSKEAAYRLYDTMLENSRRLSSDGMLISAESMINYRTHKKLPAIHKLIGD 180 EVGFANS PVSKE AY++YDTML NS +LS+ GM ISAESMINYRTH KL IHKLI D Sbjct: 155 EVGFANSARPVSKETAYKMYDTMLVNSEKLSAAGMYISAESMINYRTHTKLGGIHKLIKD 214 Query: 181 MGARRHEVHPMYASSFASKLPVLSLKEMGAAIHDLLDHRDPDMWMLFGTLPFFACSFLEE 240 MG +RHEVHPMYAS+FAS LPVLSL + AAIH LLD RD DMWMLFGTLPF+ACS + Sbjct: 215 MGCKRHEVHPMYASNFASALPVLSLADTKAAIHHLLDVRDRDMWMLFGTLPFYACSSDDH 274 Query: 241 DQKLLRRLREETNVTLRNDPDGRNRVNVNMFTGDVFVTDFADISAFGNIGSGKLDDIFTE 300 DQ+++RRLR+E NVT+RNDPDGRNRVNVN+F+GDV+VTDFADI AFGNI KLDDIF Sbjct: 275 DQEIIRRLRQEPNVTVRNDPDGRNRVNVNLFSGDVYVTDFADIPAFGNIKEQKLDDIFDA 334 Query: 301 WQLKHPLNQKVNCHCDEAGCC 321 W HPLNQ VNCHCD CC Sbjct: 335 WSTGHPLNQTVNCHCDAVSCC 355 >B1DKG0.1 B1DKG0_9BACL Radical SAM domain protein Length = 381 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/321 (66%), Positives = 260/321 (80%), Gaps = 1/321 (0%) Query: 1 VLTSVEMTVTNLCNMRCEHCAVGDSLTTKEGDMLPLKNMLDRLEEVEHLQTISITGGEPM 60 LTSVEMTV+NLCNMRCEHCAVGD+L E LPL+ M+ RL+EV+HL+TISITGGEP Sbjct: 39 TLTSVEMTVSNLCNMRCEHCAVGDTLVMSEPAKLPLELMIKRLDEVKHLETISITGGEPS 98 Query: 61 FRAGTVEKTIVPLLKYARERGIRSQINSNLTMPYSRYEQLLPYLDVMHISFNYVNGDDFH 120 F TV++ +VPLL+YAR RGIRSQINSN+T+PYSRYEQL PYLDVMHISFNY N DDFH Sbjct: 99 FSDRTVKEYMVPLLQYARSRGIRSQINSNVTLPYSRYEQLAPYLDVMHISFNYTNADDFH 158 Query: 121 EVGFANSGHPVSKEAAYRLYDTMLENSRRLSSDGMLISAESMINYRTHKKLPAIHKLIGD 180 ++GFA +GH VS+EAA +LYD M++N++RLS G+L+SAESMINYRTH+++ IH+LI + Sbjct: 159 QIGFAKAGHAVSREAAAKLYDRMIDNAKRLSDAGVLVSAESMINYRTHQQIEEIHRLIIE 218 Query: 181 MGARRHEVHPMYASSFASKLPVLSLKEMGAAIHDLLDHRDPDMWMLFGTLPFFACSFLEE 240 MG +RHEVHPMY SSFA LPVLS ++M AI LLD RD ++WMLFGTLPF+ CS E Sbjct: 219 MGCQRHEVHPMYPSSFAKDLPVLSKEDMQRAISRLLDTRDKNVWMLFGTLPFYQCSDNPE 278 Query: 241 DQKLLRRLREETNVTLRNDPDGRNRVNVNMFTGDVFVTDFADISAFGNIGSGKLDDIFTE 300 ++KLL RL E NVT+RNDPDGRNR+NVN+FTG+VFVTDF+D+ AFGNI +LD +F Sbjct: 279 ERKLLSRLASEPNVTVRNDPDGRNRLNVNLFTGEVFVTDFSDVPAFGNINDEQLDQLFDR 338 Query: 301 WQLKHPLNQKVNCHCDEAGCC 321 W L H L + VNCHC A CC Sbjct: 339 W-LDHKLARSVNCHCPAAACC 358 >C0ZBI1.1 C0ZBI1_BREBN Putative uncharacterized protein Length = 371 Score = 397 bits (1021), Expect = e-109, Method: Compositional matrix adjust. Identities = 182/320 (56%), Positives = 242/320 (75%), Gaps = 1/320 (0%) Query: 2 LTSVEMTVTNLCNMRCEHCAVGDSLTTKEGDMLPLKNMLDRLEEVEHLQTISITGGEPMF 61 LTSVE TVTNLCN+RCEHCAVGD+L K+ LP+ +L RL+E + L T+SITGGEPM+ Sbjct: 30 LTSVEFTVTNLCNLRCEHCAVGDTLRYKDDPALPVDLILRRLDEAKDLLTLSITGGEPMY 89 Query: 62 RAGTVEKTIVPLLKYARERGIRSQINSNLTMPYSRYEQLLPYLDVMHISFNYVNGDDFHE 121 TV+ I P+L+YA +RG+R+QINSN++MP+SRYE +LPY+DVMHIS+N+ ++FH+ Sbjct: 90 SERTVKTVIAPILQYAADRGLRTQINSNMSMPFSRYELILPYIDVMHISWNWSTPEEFHD 149 Query: 122 VGFANSGHPVSKEAAYRLYDTMLENSRRLSSDGMLISAESMINYRTHKKLPAIHKLIGDM 181 + +A + PVS + A + M+EN+R+LS G+ +SAE+M+N+RT KL +H+ I +M Sbjct: 150 IVYAKARQPVSMKRAEAQFHEMIENARKLSEAGVFVSAETMLNHRTWTKLDTLHRQIQEM 209 Query: 182 GARRHEVHPMYASSFASKLPVLSLKEMGAAIHDLLDHRDPDMWMLFGTLPFFACSFLEED 241 G++RHEVHPMYAS FA L VLSL E+ AIH +LD R+ D+WMLFGTLPFFACS D Sbjct: 210 GSKRHEVHPMYASDFARDLDVLSLDELRQAIHRMLDVRNEDLWMLFGTLPFFACSSEAAD 269 Query: 242 QKLLRRLREETNVTLRNDPDGRNRVNVNMFTGDVFVTDFADISAFGNIGSGKLDDIFTEW 301 ++L+ RLR NVT RNDPDGRNR+N+N+FTGDV VTDF D+ GNI + +L +F +W Sbjct: 270 RELISRLRSAKNVTTRNDPDGRNRLNINIFTGDVIVTDFGDVEPLGNIQTDQLKSMFEKW 329 Query: 302 QLKHPLNQKVNCHCDEAGCC 321 Q +H LNQK+NC C AGC Sbjct: 330 Q-EHTLNQKINCFCPAAGCA 348 >A8VRK3.1 A8VRK3_9BACI Fe-S oxidoreductase-like protein Length = 372 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 173/320 (54%), Positives = 229/320 (71%), Gaps = 1/320 (0%) Query: 1 VLTSVEMTVTNLCNMRCEHCAVGDSLTTKEGDMLPLKNMLDRLEEVEHLQTISITGGEPM 60 VL+++E+T T+LCNMRCEHCAVG L TK+ + LPL ++ RL+EV+HL+ SITGGEPM Sbjct: 27 VLSNIEITTTHLCNMRCEHCAVGYGLLTKDPEPLPLDTIISRLDEVKHLRAFSITGGEPM 86 Query: 61 FRAGTVEKTIVPLLKYARERGIRSQINSNLTMPYSRYEQLLPYLDVMHISFNYVNGDDFH 120 V++ ++PLL+YA+ERG ++QINSNLTMP RYE +LPYLDV+HIS NY + DDF Sbjct: 87 MNLKQVKQYVIPLLRYAKERGAKTQINSNLTMPLERYEWILPYLDVLHISHNYGSKDDFA 146 Query: 121 EVGFANSGHPVSKEAAYRLYDTMLENSRRLSSDGMLISAESMINYRTHKKLPAIHKLIGD 180 E+G+A + E YR++DTM+ N++ LS G++ISAE+MIN RT L AIH I + Sbjct: 147 EIGYAVMDKKPTLEQRYRVFDTMVNNAKALSKQGLMISAETMINTRTLPHLEAIHDQIVN 206 Query: 181 MGARRHEVHPMYASSFASKLPVLSLKEMGAAIHDLLDHRDPDMWMLFGTLPFFACSFLEE 240 MG RHEVHPMY +SFA LPV L+ + IH LLDHRDP++WMLFGTLPF+ CS + Sbjct: 207 MGCARHEVHPMYPTSFAEDLPVADLRAIRDGIHRLLDHRDPNVWMLFGTLPFYPCSTDND 266 Query: 241 DQKLLRRLREETNVTLRNDPDGRNRVNVNMFTGDVFVTDFADISAFGNIGSGKLDDIFTE 300 D L+RRL E +T+RNDPDGR+R+NVN+F G++ VTDFA GNI L+ ++ Sbjct: 267 DLTLIRRLYETPGITVRNDPDGRSRLNVNLFDGNILVTDFAAEGKVGNIQRDSLESAYSA 326 Query: 301 WQLKHPLNQKVNCHCDEAGC 320 W+ K L ++CHC GC Sbjct: 327 WK-KTALAASLDCHCPSVGC 345 >B1YK38.1 B1YK38_EXIS2 YfkB-like domain protein Length = 370 Score = 362 bits (929), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 173/320 (54%), Positives = 230/320 (71%), Gaps = 2/320 (0%) Query: 2 LTSVEMTVTNLCNMRCEHCAVGDSLTTKEGDMLPLKNMLDRLEEVEHLQTISITGGEPMF 61 LT++E+T T LCNMRCEHCAVG L+ E +P++ ++ RL+E+EHL+ SITGGEPM Sbjct: 28 LTNIEVTTTTLCNMRCEHCAVGYMLSNSETPTIPVELLIKRLDEIEHLRAFSITGGEPML 87 Query: 62 RAGTVEKTIVPLLKYARERGIRSQINSNLTMPYSRYEQLLPYLDVMHISFNYVNGDDFHE 121 +V + +VPLLKYA ERG ++QINSNLT+P SRYE ++PYLDV+HIS N+ DDF + Sbjct: 88 SMKSVREYVVPLLKYAHERGAKTQINSNLTLPLSRYELIIPYLDVLHISHNWGTADDFID 147 Query: 122 VGFANSGHPVSKEAAYRLYDTMLENSRRLSSDGMLISAESMINYRTHKKLPAIHKLIGDM 181 GFA S+EA +L++ M EN+R L++ G+L+SAE+MIN RT L AIH+ I +M Sbjct: 148 GGFAMMERKPSREARTKLFEQMKENARILNARGVLVSAETMINKRTLPHLEAIHQEIVEM 207 Query: 182 GARRHEVHPMYASSFASKLPVLSLKEMGAAIHDLLDHRDPDMWMLFGTLPFFACSFLEED 241 G RHEVHPMY + FAS + SL E+ IH LLD RDPD+WMLFGTLPF+ACS EED Sbjct: 208 GCVRHEVHPMYPADFASMIEAASLDEIRDGIHRLLDVRDPDVWMLFGTLPFYACSMKEED 267 Query: 242 QKLLRRLREETNVTLRNDPDGRNRVNVNMFTGDVFVTDFAD-ISAFGNIGSGKLDDIFTE 300 L RRLR E NV++RNDPDGR+R+NVN+F G++ VTDF D +++ G I ++ + Sbjct: 268 LALHRRLRREPNVSVRNDPDGRSRLNVNIFDGEIIVTDFGDELASLGTIHDTSFNEAYAM 327 Query: 301 WQLKHPLNQKVNCHCDEAGC 320 WQ + LNQ+++CHC C Sbjct: 328 WQ-QTELNQRLSCHCPAVQC 346 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,984,714,767 Number of extensions: 83151415 Number of successful extensions: 191878 Number of sequences better than 1.0e-05: 130 Number of HSP's gapped: 191926 Number of HSP's successfully gapped: 130 Length of query: 338 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 202 Effective length of database: 1,779,438,163 Effective search space: 359446508926 Effective search space used: 359446508926 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)