BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0157.0002.p
         (172 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KEQ7.1 B3KEQ7_9BACI Binding-protein-dependent transport system...   175   1e-42
B1D7Q3.1 B1D7Q3_9BACL Binding-protein-dependent transport system...   172   1e-41
B3K5P1.1 B3K5P1_9BACI Binding-protein-dependent transport system...   153   6e-36
Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease                   97   5e-19
Q1M3Q8.1 Q1M3Q8_RHIL3 Putative transmembrane permease transporte...    92   2e-17

>B3KEQ7.1 B3KEQ7_9BACI Binding-protein-dependent transport systems inner
           membrane component
          Length = 299

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/128 (66%), Positives = 103/128 (80%)

Query: 2   IWGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAITI 61
           +WGAVGNY+LLFLAGLQ IP+DLYE+A++DGA+  R+ WSIT+P+L PV Q++IMLAI  
Sbjct: 164 VWGAVGNYMLLFLAGLQSIPQDLYESAAMDGANAGRRFWSITLPMLAPVAQLVIMLAIIA 223

Query: 62  SLKGYESIMVLTQGGPYSKTEVMYLYLFKLLFPISPEVQTQQQLGYGSAVGFATGGYCGC 121
           SLKGYESIM++T+GGP  KTEVMYLYL+KLLFP+S     +QQLGYGSAVGFAT    G 
Sbjct: 224 SLKGYESIMLITEGGPIGKTEVMYLYLYKLLFPVSTGSPVEQQLGYGSAVGFATAVIVGA 283

Query: 122 GHDDLFLL 129
                FLL
Sbjct: 284 ITGLYFLL 291


>B1D7Q3.1 B1D7Q3_9BACL Binding-protein-dependent transport systems inner
           membrane component
          Length = 298

 Score =  172 bits (436), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/120 (67%), Positives = 101/120 (84%)

Query: 2   IWGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAITI 61
           IWGA+GNY+LLFLAGLQ IP+D+YE+AS+DGA+ ++K + ITIP+LGPV+QMIIMLAITI
Sbjct: 163 IWGAIGNYMLLFLAGLQNIPDDVYESASLDGANASQKFFYITIPMLGPVLQMIIMLAITI 222

Query: 62  SLKGYESIMVLTQGGPYSKTEVMYLYLFKLLFPISPEVQTQQQLGYGSAVGFATGGYCGC 121
           SLKGYESIMVLT+GGP  +TEVMYLY++++ FPIS      QQ+GYGSAVGF +    G 
Sbjct: 223 SLKGYESIMVLTEGGPIGRTEVMYLYVYRMFFPISSSSTMIQQIGYGSAVGFMSAVIVGL 282


>B3K5P1.1 B3K5P1_9BACI Binding-protein-dependent transport systems inner
           membrane component
          Length = 300

 Score =  153 bits (386), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 94/122 (77%), Gaps = 2/122 (1%)

Query: 2   IWGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAITI 61
           +WGA+GNY+LLFLAGLQ IPED+YE++++DGAS+ ++   ITIP+LGPVMQMIIMLAI  
Sbjct: 163 VWGAIGNYMLLFLAGLQNIPEDVYESSALDGASKFQQFRYITIPMLGPVMQMIIMLAIIN 222

Query: 62  SLKGYESIMVLTQGGPYSKTEVMYLYLFKLLF-PISPEVQTQ-QQLGYGSAVGFATGGYC 119
           +LKGYESIMV+T GGP  KT VM+LY++KL F P      TQ Q+ GYGSAV F T    
Sbjct: 223 ALKGYESIMVMTDGGPIGKTNVMFLYVYKLFFPPAGSTASTQIQEFGYGSAVAFVTAVIV 282

Query: 120 GC 121
           G 
Sbjct: 283 GV 284


>Q2BFH7.1 Q2BFH7_9BACI Sugar ABC transporter permease
          Length = 291

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 73/112 (65%), Gaps = 7/112 (6%)

Query: 1   LIWGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAIT 60
           +IW  VG Y+++FLA LQ +P+++ EAA IDGASE    W ITIP++   + + ++LAI+
Sbjct: 164 VIWQFVGLYLIIFLAALQNVPQEVLEAAKIDGASEWTTTWKITIPMIWDTIIVAVILAIS 223

Query: 61  ISLKGYESIMVLTQGGPYSKTEVMYLYLFKLLFPISPEVQTQQQLGYGSAVG 112
            SLK ++ I V+T GGP   T+VM LY+F        E  ++ Q GYGSAV 
Sbjct: 224 GSLKTFDLIYVMTHGGPAHSTDVMALYMFN-------ETFSKLQYGYGSAVS 268


>Q1M3Q8.1 Q1M3Q8_RHIL3 Putative transmembrane permease transporter component
          Length = 310

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 7/110 (6%)

Query: 3   WGAVGNYILLFLAGLQGIPEDLYEAASIDGASEARKLWSITIPLLGPVMQMIIMLAITIS 62
           W A G  ++++LAGLQGIPE+LY+AA IDGAS  R+ W +T+P L P    ++++    +
Sbjct: 185 WQAYGFQMIIYLAGLQGIPEELYDAARIDGASALRRFWHVTMPGLRPTHVFVLVITTIQA 244

Query: 63  LKGYESIMVLTQGGPYSKTEVMYLYLFKLLFPISPEVQTQQQLGYGSAVG 112
            K Y  + +LTQGGP   TE +  Y+ +  F        +Q+LGY SAV 
Sbjct: 245 FKLYTQVAILTQGGPNESTETVVHYMVRAGF-------EEQKLGYASAVS 287


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.144    0.472 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,075,562,694
Number of extensions: 42798986
Number of successful extensions: 135201
Number of sequences better than 1.0e-05: 4085
Number of HSP's gapped: 135032
Number of HSP's successfully gapped: 4085
Length of query: 172
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 46
Effective length of database: 1,873,648,313
Effective search space: 86187822398
Effective search space used: 86187822398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)