BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0004.p (291 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K650.1 B3K650_9BACI Binding-protein-dependent transport system... 486 e-135 C4ZB13.1 C4ZB13_9FIRM Putative ABC-type sugar transport systems,... 307 7e-82 C5EMA2.1 C5EMA2_9FIRM Sugar ABC transporter permease 303 1e-80 C4G1L8.1 C4G1L8_ABIDE Putative uncharacterized protein 296 2e-78 A1R3C3.1 A1R3C3_ARTAT Putative ABC-type sugar transport systems,... 249 1e-64 >B3K650.1 B3K650_9BACI Binding-protein-dependent transport systems inner membrane component Length = 291 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 239/291 (82%), Positives = 257/291 (88%) Query: 1 MNVLKDKKAWLVFILPALIFYLGTVFVPIIQSLKYGFQQWNGIQEPHYIGLDNYIAMFKD 60 MNVLKDKKAWL+FI PAL+FYL TVFVPIIQSL YGFQ WNGI++ YIGL NYI MF+D Sbjct: 1 MNVLKDKKAWLIFIAPALLFYLVTVFVPIIQSLNYGFQDWNGIKDASYIGLGNYIKMFQD 60 Query: 61 SYFWNSXXXXXXXXXXXXXXXXXXGLFFALMLSYVTKGAGIFRTLYYLPAVVVTVAIAQM 120 YFWN+ GLFFAL+LSYV KGA +FRTLYYLPAVVVTVAIAQM Sbjct: 61 PYFWNAVKNNLVYVVIVVLMQVFIGLFFALLLSYVKKGASLFRTLYYLPAVVVTVAIAQM 120 Query: 121 FRNFYSLQPLGLLNMFLDWVGLSHLQSAWLSNPHTALIAVSIPEGWRFIGMYMVIFYAAL 180 FRNFYSLQPLGLLNMFL+W+GL HLQSAWLS+PHTALIAVSIPEGWRF GMYMVIFYAAL Sbjct: 121 FRNFYSLQPLGLLNMFLEWIGLGHLQSAWLSDPHTALIAVSIPEGWRFTGMYMVIFYAAL 180 Query: 181 IAIPKEIEEAATIDGVSGWQLIRYIKLPSIMHVLSLSLIMCTTGALRGFDIPYIIGVPGS 240 IAIPKEIEEAATIDGV+GWQLIR+IKLPSI HVLSL+LIMCTTGALRGFDIPYIIGV GS Sbjct: 181 IAIPKEIEEAATIDGVNGWQLIRHIKLPSIKHVLSLALIMCTTGALRGFDIPYIIGVQGS 240 Query: 241 ATELVTTYMYKQAFSTIQYGYGSAIAVFIVIESLLAVLIIRAIFNSRKGDA 291 TELVTTYMYK+AF++IQYGYGSAIAVFIVIESLLAVLIIRAIFNSRKG+A Sbjct: 241 TTELVTTYMYKKAFTSIQYGYGSAIAVFIVIESLLAVLIIRAIFNSRKGEA 291 >C4ZB13.1 C4ZB13_9FIRM Putative ABC-type sugar transport systems, permease component Length = 299 Score = 307 bits (787), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 144/290 (49%), Positives = 208/290 (71%), Gaps = 2/290 (0%) Query: 1 MNVLKDKKAWLVFILPALIFYLGTVFVPIIQSLKYGFQQWNGIQEPHYIGLDNYIAMFKD 60 M V+K++K + +F+LP L+FY+ +VF PI +S++ F +WNGI + + GL NY+ MF D Sbjct: 5 MGVIKNRKWFFIFLLPGLLFYILSVFYPIEESIRLSFMEWNGIGDKTFAGLQNYVTMFHD 64 Query: 61 SYFWNSXXXXXXXXXXXXXXXXXXGLFFALMLSYVTKGAGIFRTLYYLPAVVVTVAIAQM 120 F+ S GL FA++L+++ K +TLYY+P ++ TVAIAQ+ Sbjct: 65 PTFYKSFLNNLIYLLIVVVMQLGIGLVFAVLLTFMKKHVTFVKTLYYVPCIITTVAIAQL 124 Query: 121 FRNFYSLQPLGLLNMFLDWVGLSHLQSAWLSNPHTALIAVSIPEGWRFIGMYMVIFYAAL 180 FR+ Y+ +P+GL+N F +G+ + ++WL+N HTAL+AVS+PEGWRF GMYMVIFYAAL Sbjct: 125 FRSMYATEPMGLINQFFQAIGMEGMVTSWLANIHTALMAVSVPEGWRFTGMYMVIFYAAL 184 Query: 181 IAIPKEIEEAATIDGVSGWQLIRYIKLPSIMHVLSLSLIMCTTGALRGFDIPYII--GVP 238 I++ + EAA +DG + +Q++ IKLP I ++ L+L MC TGALRGFDIP+++ G P Sbjct: 185 ISLDPSVYEAAKVDGATDFQILLKIKLPLIKDIILLTLTMCLTGALRGFDIPFLLTSGGP 244 Query: 239 GSATELVTTYMYKQAFSTIQYGYGSAIAVFIVIESLLAVLIIRAIFNSRK 288 G+A+EL++TYMYK+AFS QYGYGSA+AVFI+IES+L V I+R IF+ RK Sbjct: 245 GNASELLSTYMYKKAFSNNQYGYGSALAVFIIIESMLVVFILRKIFSERK 294 >C5EMA2.1 C5EMA2_9FIRM Sugar ABC transporter permease Length = 300 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 141/290 (48%), Positives = 206/290 (71%), Gaps = 4/290 (1%) Query: 1 MNVLKDKKAWLVFILPALIFYLGTVFVPIIQSLKYGFQQWNGIQEPHYIGLDNYIAMFKD 60 M +L+D+KA+ VF+LP L+FY+ VF PI +S++ F +W GI ++GLDNYI MF+D Sbjct: 1 MGILRDRKAFCVFLLPGLLFYILAVFYPIEESIRLSFMEWGGIGARKFVGLDNYIHMFRD 60 Query: 61 SYFWNSXXXXXXXXXXXXXXXXXXGLFFALMLSYVTKGAGIFRTLYYLPAVVVTVAIAQM 120 F+ + GL FA++L+Y+TK + +TLYY+P ++ TVA+ Q+ Sbjct: 61 PVFYTAFVNNLIYLVIVVSMQLMIGLIFAVLLTYMTKHVALIKTLYYVPCIITTVAVTQL 120 Query: 121 FRNFYSLQPLGLLNMFLDWVGLSHLQSAWLSNPHTALIAVSIPEGWRFIGMYMVIFYAAL 180 FR+ Y+ +P+GL+N L+ G+ + +WL+N T L AVS+PEGWRF GMYMVIFYAAL Sbjct: 121 FRSMYATEPVGLINQILNVFGIRSI--SWLTNIKTVLAAVSLPEGWRFAGMYMVIFYAAL 178 Query: 181 IAIPKEIEEAATIDGVSGWQLIRYIKLPSIMHVLSLSLIMCTTGALRGFDIPYII--GVP 238 I++ KE+ EAA +DG + WQL+ IKLP I ++ L+L MC TGALRGFDIP+++ G P Sbjct: 179 ISLDKEVMEAARVDGATDWQLLIRIKLPMIRQIILLTLTMCLTGALRGFDIPFLLTNGGP 238 Query: 239 GSATELVTTYMYKQAFSTIQYGYGSAIAVFIVIESLLAVLIIRAIFNSRK 288 G+ +EL++TYMYK+AFS+ QYGYGS ++VFI+IES+L V ++RA+ + + Sbjct: 239 GNVSELMSTYMYKKAFSSNQYGYGSTLSVFIIIESILVVALLRAVMSEER 288 >C4G1L8.1 C4G1L8_ABIDE Putative uncharacterized protein Length = 299 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 141/290 (48%), Positives = 205/290 (70%), Gaps = 2/290 (0%) Query: 1 MNVLKDKKAWLVFILPALIFYLGTVFVPIIQSLKYGFQQWNGIQEPHYIGLDNYIAMFKD 60 M ++K KK +L+F+LP L+FY+ +VF PI +S++ F WNGI + + GL NYI MFKD Sbjct: 5 MGIIKSKKWFLIFLLPGLLFYILSVFYPIEESIRLSFMSWNGIGDRTFAGLQNYITMFKD 64 Query: 61 SYFWNSXXXXXXXXXXXXXXXXXXGLFFALMLSYVTKGAGIFRTLYYLPAVVVTVAIAQM 120 F+ + GL FA++L+++ K + +TLYY+P ++ TVAIAQ+ Sbjct: 65 RTFYKAFINNLVYLLIVVSMQLTIGLVFAVLLTFMKKHVILIKTLYYVPCIITTVAIAQL 124 Query: 121 FRNFYSLQPLGLLNMFLDWVGLSHLQSAWLSNPHTALIAVSIPEGWRFIGMYMVIFYAAL 180 FR+ Y+ +P+GL+N F +G+ ++ ++W++N T L AVSIPEGWRF GMYMVIFYAAL Sbjct: 125 FRSMYATEPMGLINQFFSAIGMDNMVTSWIANIKTMLAAVSIPEGWRFTGMYMVIFYAAL 184 Query: 181 IAIPKEIEEAATIDGVSGWQLIRYIKLPSIMHVLSLSLIMCTTGALRGFDIPYII--GVP 238 +++ + EAA +DG + Q++ IKLP I +++ L+L MC TGALRGFDIP+++ G Sbjct: 185 VSLNPSVYEAAKVDGATELQILFKIKLPLIKNIILLTLTMCLTGALRGFDIPFLLTGGGA 244 Query: 239 GSATELVTTYMYKQAFSTIQYGYGSAIAVFIVIESLLAVLIIRAIFNSRK 288 G+ +EL++TYMYK+AFS QYGYGSA+AVFI+IES+L V+I+R IF RK Sbjct: 245 GNYSELLSTYMYKKAFSNNQYGYGSALAVFIIIESILVVIILRKIFAERK 294 >A1R3C3.1 A1R3C3_ARTAT Putative ABC-type sugar transport systems, permease components Length = 293 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 133/274 (48%), Positives = 171/274 (62%), Gaps = 4/274 (1%) Query: 21 YLGTVFVPIIQSLKYGFQQWNGIQEPHYIGLDNYIAMFK-DSYFWNSXXXXXXXXXXXXX 79 Y V PI+QSL F WNGI E ++GL NY+ M D FW S Sbjct: 21 YCAAVLFPILQSLFLSFFSWNGISEMEFVGLANYVRMLTADDIFWRSFFNALLYLAICLV 80 Query: 80 XXXXXGLFFALMLSYVTKGAGIFRTLYYLPAVVVTVAIAQMFRNFYSLQPLGLLNMFLDW 139 L A +L+ + +G + +TLY LPAV+ TVAIA +F YS+ P+GLLN L W Sbjct: 81 LQLGGALVVASLLTSLRRGRELIKTLYLLPAVISTVAIAFLFVRIYSIDPVGLLNQLLHW 140 Query: 140 VGLSHLQSAWLSNPHTALIAVSIPEGWRFIGMYMVIFYAALIAIPKEIEEAATIDGVSGW 199 +GL + AWLS+ +T L AVS PEGWRF G+YM+I YAALIA+PKE+EEAA +DG S W Sbjct: 141 IGLGSFERAWLSDVNTVLAAVSAPEGWRFTGLYMLIIYAALIAVPKELEEAAVLDGASKW 200 Query: 200 QLIRYIKLPSIMHVLSLSLIMCTTGALRGFDIPYII--GVPGSATELVTTYMYKQAFSTI 257 L I+ P I V + IM TT LRGFDIPY++ G PG ++EL+TTYMYK AF++ Sbjct: 201 TLFTKIRFPYIRPVWITTTIMATTYGLRGFDIPYLMTNGGPGQSSELLTTYMYKTAFTST 260 Query: 258 QYGYGSAIAVFIVIESLLAVLIIRAIFNSRKGDA 291 +GY S I+VFIVIE L+AV +I + RK D+ Sbjct: 261 DFGYASTISVFIVIECLVAVGLILFMLK-RKADS 293 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,605,129,383 Number of extensions: 61512655 Number of successful extensions: 215882 Number of sequences better than 1.0e-05: 5703 Number of HSP's gapped: 206193 Number of HSP's successfully gapped: 5708 Length of query: 291 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 157 Effective length of database: 1,798,280,193 Effective search space: 282329990301 Effective search space used: 282329990301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)