BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0156.0003.p (277 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K651.1 B3K651_9BACI Binding-protein-dependent transport system... 441 e-122 C5EMA1.1 C5EMA1_9FIRM Putative uncharacterized protein 273 2e-71 C4G1L7.1 C4G1L7_ABIDE Putative uncharacterized protein 272 2e-71 C4ZB14.1 C4ZB14_9FIRM Sugar ABC transporter (Permease) 266 2e-69 C4GDD9.1 C4GDD9_9FIRM Putative uncharacterized protein 241 5e-62 >B3K651.1 B3K651_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust. Identities = 218/252 (86%), Positives = 234/252 (92%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALII 85 PVVWLMLSSFKSSIELTT+PF++P+ WSF+NYA+VFR+SSLLLYIKNTAIVTF CL LI+ Sbjct: 26 PVVWLMLSSFKSSIELTTKPFSLPTLWSFDNYAAVFRDSSLLLYIKNTAIVTFSCLLLIV 85 Query: 86 FLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQ 145 FLSATAGFALVKM +RLNSKLLLFFT+GIMIPIQVTLIPLFIMYK+ GLLNSY ALILPQ Sbjct: 86 FLSATAGFALVKMQSRLNSKLLLFFTIGIMIPIQVTLIPLFIMYKESGLLNSYLALILPQ 145 Query: 146 VGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIF 205 VGFALPLSILIFTSFYRYVP ELIEAAVIDGCNIYQVF+++ISPLTINTTITVASINFIF Sbjct: 146 VGFALPLSILIFTSFYRYVPNELIEAAVIDGCNIYQVFLKVISPLTINTTITVASINFIF 205 Query: 206 IWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKY 265 IWNDF+FSNTFTNDK YKTIAVGLQEFIGAFGATDWGQTFAA VTYL LN+Y Sbjct: 206 IWNDFIFSNTFTNDKQYKTIAVGLQEFIGAFGATDWGQTFAAICISIIPIIVTYLLLNRY 265 Query: 266 VMAGVSDGAVKG 277 VMAGVSDGAVKG Sbjct: 266 VMAGVSDGAVKG 277 >C5EMA1.1 C5EMA1_9FIRM Putative uncharacterized protein Length = 282 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 131/252 (51%), Positives = 182/252 (72%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALII 85 PV+WL L+S K + EL+ PFA+P S + NY +F + +L Y+ N+ +T V + LI+ Sbjct: 31 PVLWLFLASIKPTTELSAAPFALPKSPTLANYIKIFSDGKILGYMWNSFKITAVSIVLIV 90 Query: 86 FLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQ 145 FLSATAGFA+ K RL ++ FFT GIMIP+Q+TLIPLFI Y +LN+ +LILPQ Sbjct: 91 FLSATAGFAISKFRFRLTGRIYAFFTFGIMIPVQITLIPLFIFYSRMHILNTSFSLILPQ 150 Query: 146 VGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIF 205 VGFALPLS+++F SFY ++P ELIE+A++DGC+ Y+ F I+ PL NT ITVAS++ IF Sbjct: 151 VGFALPLSVMLFVSFYSFIPNELIESAIVDGCSPYRTFTSIVFPLAKNTVITVASMHSIF 210 Query: 206 IWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKY 265 IWNDF+F+NTF +++A KT+A+GL++++GAFG DWG T+AA + Y LNK+ Sbjct: 211 IWNDFIFANTFISEQAAKTVALGLKDYVGAFGNVDWGSTYAAIAVSILPPMIVYFVLNKW 270 Query: 266 VMAGVSDGAVKG 277 V G++ GAVKG Sbjct: 271 VAEGMTAGAVKG 282 >C4G1L7.1 C4G1L7_ABIDE Putative uncharacterized protein Length = 279 Score = 272 bits (696), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 133/252 (52%), Positives = 180/252 (71%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALII 85 PVVWL ++S K ++EL+T PFA+P S +FEN+ V + LY+ N+ VT + L LII Sbjct: 28 PVVWLFMASVKPTVELSTSPFALPKSITFENFIKVLSGGKIGLYMWNSLKVTGISLLLII 87 Query: 86 FLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQ 145 FL AT G+AL K +R ++ FFT GIM+P+Q+TLIPLFI Y G+LN+ +L+LPQ Sbjct: 88 FLGATTGYALSKFKSRFKKQIYAFFTFGIMVPVQITLIPLFIFYSRAGILNTSFSLVLPQ 147 Query: 146 VGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIF 205 VGFALPLS+++F SFY +VP ELIEAA++DGCN ++F+ I+ PL NT IT+AS+ I Sbjct: 148 VGFALPLSVMMFVSFYNFVPDELIEAAIVDGCNPGRIFVTIVFPLARNTVITIASMYSIL 207 Query: 206 IWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKY 265 IWNDF+F+NTF +D KT+A+GL++F+GAFG DWG TFAA + Y LNK+ Sbjct: 208 IWNDFIFANTFISDTNAKTVAMGLKDFVGAFGNVDWGSTFAAIIISILPPMIIYFALNKW 267 Query: 266 VMAGVSDGAVKG 277 V AG++ GA KG Sbjct: 268 VTAGMTMGATKG 279 >C4ZB14.1 C4ZB14_9FIRM Sugar ABC transporter (Permease) Length = 275 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 130/252 (51%), Positives = 180/252 (71%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALII 85 P++WL ++S K +IEL+T PFA+P +FEN+ VF + + +Y+ N+ VT + L LII Sbjct: 24 PIIWLFMASVKPTIELSTTPFALPKVVTFENFIKVFSDGKIGIYMWNSLKVTGISLILII 83 Query: 86 FLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQ 145 FLS+T G+AL K R ++ FFT GIM+P+Q+TLIPLFI Y G+LN+ +LILPQ Sbjct: 84 FLSSTVGYALSKFRIRGKKQIYKFFTFGIMVPVQITLIPLFIFYSKMGILNTSFSLILPQ 143 Query: 146 VGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIF 205 VGFALPL++++F SFY +VP EL+EAA++DGCN FI+I+ PL NT IT+AS+ I Sbjct: 144 VGFALPLAVMMFVSFYDFVPDELVEAAIVDGCNPGVTFIKIVFPLARNTIITIASMYSIL 203 Query: 206 IWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKY 265 IWNDF+F+NTF +D KT+A+GL++++GAFG DWG TFAA + Y LNK+ Sbjct: 204 IWNDFIFANTFISDSNAKTVAMGLKDYVGAFGNVDWGLTFAAIVISILPPLIIYFALNKW 263 Query: 266 VMAGVSDGAVKG 277 V AG++ GA KG Sbjct: 264 VTAGMTMGATKG 275 >C4GDD9.1 C4GDD9_9FIRM Putative uncharacterized protein Length = 279 Score = 241 bits (615), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 115/252 (45%), Positives = 173/252 (68%) Query: 26 PVVWLMLSSFKSSIELTTQPFAMPSSWSFENYASVFRESSLLLYIKNTAIVTFVCLALII 85 P++WL+L++F+S+ EL T+PF+ P + EN+ +F S +L YIKN+AI++ + L I+ Sbjct: 28 PILWLLLAAFRSNRELLTEPFSWPHELTLENFIKIFEGSHVLTYIKNSAIISVISLVFIV 87 Query: 86 FLSATAGFALVKMINRLNSKLLLFFTVGIMIPIQVTLIPLFIMYKDYGLLNSYPALILPQ 145 FLS+ A FA+ KM K+ +F +G+ IP VTLIPLF M+ GL++ ++ILP Sbjct: 88 FLSSMASFAIAKMKFMGRKKIYRYFLIGLTIPYAVTLIPLFTMFSRVGLIDHRLSVILPL 147 Query: 146 VGFALPLSILIFTSFYRYVPGELIEAAVIDGCNIYQVFIRIISPLTINTTITVASINFIF 205 + F LP+SI++FT+FYR++P E+IEAA+IDG +IY V+ +II PL++NT +TV ++NFI Sbjct: 148 LAFQLPVSIMLFTNFYRFIPDEVIEAAIIDGSSIYGVYTKIIMPLSLNTILTVVAMNFIT 207 Query: 206 IWNDFVFSNTFTNDKAYKTIAVGLQEFIGAFGATDWGQTFAAXXXXXXXXXVTYLFLNKY 265 +WND+ FS F N A KT+++GL +FIG G DWG T+AA + Y LNK Sbjct: 208 VWNDYTFSLVFINSTALKTVSLGLTDFIGPRGLKDWGATYAAIATSILPTLLLYFGLNKK 267 Query: 266 VMAGVSDGAVKG 277 + +G++ GAVK Sbjct: 268 ITSGMTLGAVKS 279 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,338,499,489 Number of extensions: 49726496 Number of successful extensions: 184241 Number of sequences better than 1.0e-05: 5973 Number of HSP's gapped: 177087 Number of HSP's successfully gapped: 5973 Length of query: 277 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 143 Effective length of database: 1,798,280,193 Effective search space: 257154067599 Effective search space used: 257154067599 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)