BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0155.0007.p (161 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A0YIN1.1 A0YIN1_9CYAN Probable transcriptional regulatory protei... 151 2e-35 A9G3R2.1 A9G3R2_SORC5 Leucine responsive regulatory protein 144 2e-33 Q1DFS8.1 Q1DFS8_MYXXD Transcriptional regulator, AsnC family 124 4e-27 Q8KM39.1 Q8KM39_MYXXA Putative transcriptional regulatory protein 124 4e-27 B4WI65.1 B4WI65_9SYNE Transcriptional regulator, AsnC family 119 7e-26 >A0YIN1.1 A0YIN1_9CYAN Probable transcriptional regulatory protein, AsnC family protein Length = 139 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 68/138 (49%), Positives = 97/138 (70%) Query: 19 MDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAGYGLGALIAVSLE 78 M GRITW+E +RV++LEE+G+I+GY A I+ E+ G L A IAV+L+ Sbjct: 1 MVQGRITWSELASVLGLSAPATAERVKRLEERGVIQGYNARINPEAVGCELTAFIAVTLQ 60 Query: 79 RPVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRIISGELKSLPGIVRTR 138 +P +R AFL+ ++++ + ECHH GDDDY+LKVRC+ TR L+RI+S E+K + GI++TR Sbjct: 61 QPQYRAAFLQRIEEMSAVMECHHITGDDDYLLKVRCQNTRHLERIVSEEIKGISGILKTR 120 Query: 139 TTIILGTVKETPNAPLPP 156 TT++L T KET PLPP Sbjct: 121 TTVVLSTAKETSAIPLPP 138 >A9G3R2.1 A9G3R2_SORC5 Leucine responsive regulatory protein Length = 194 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 75/155 (48%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 7 MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66 MD ID K I + + R +WA+ +RVR+LEE+G+I G+ A +DA + G Sbjct: 19 MDGIDLKAIHLLARDARRSWADLGEAVGLSAPAVAERVRRLEERGVITGWEARLDARAVG 78 Query: 67 YGLGALIAVSLERPVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRIISG 126 GL A I+VS+ R FL V++ EIQECHH AGD+DY+LKVRCR T L+R+++ Sbjct: 79 AGLTAFISVSIANRRGRGEFLRAVERAAEIQECHHVAGDEDYLLKVRCRDTEALERLLTQ 138 Query: 127 ELKSLPGIVRTRTTIILGTVKETPNAPLP-PSEHA 160 ELK+ G+VRTRTTI+L T KET PLP PS+ A Sbjct: 139 ELKAHDGVVRTRTTIVLSTAKETALPPLPLPSDEA 173 >Q1DFS8.1 Q1DFS8_MYXXD Transcriptional regulator, AsnC family Length = 158 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 92/150 (61%) Query: 7 MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66 +D +D++II + +GR T E +R+RKLEE+G+I GY+A +DA G Sbjct: 3 LDELDHRIIDMLQRDGRATQLELSRAVKLSQPAVAERIRKLEERGVITGYSARVDAAKLG 62 Query: 67 YGLGALIAVSLERPVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRIISG 126 + A I VS+E P + FL+ V LP++ ECH AG D Y+LKV+ TR LD ++ G Sbjct: 63 KDITAFIGVSIEHPKYFDEFLQKVLLLPDVLECHRVAGQDSYLLKVKTANTRSLDSLLVG 122 Query: 127 ELKSLPGIVRTRTTIILGTVKETPNAPLPP 156 L+++ G+ RT+TTI+L ++KE + +PP Sbjct: 123 TLRTIAGVTRTQTTIVLTSMKEDTHVRVPP 152 >Q8KM39.1 Q8KM39_MYXXA Putative transcriptional regulatory protein Length = 158 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/150 (40%), Positives = 92/150 (61%) Query: 7 MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66 +D +D++II + +GR T E +R+RKLEE+G+I GY+A +DA G Sbjct: 3 LDELDHRIIDMLQRDGRATQLELSRAVKLSQPAVAERIRKLEERGVITGYSARVDAAKLG 62 Query: 67 YGLGALIAVSLERPVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRIISG 126 + A I VS+E P + FL+ V LP++ ECH AG D Y+LKV+ TR LD ++ G Sbjct: 63 KDITAFIGVSIEHPKYFDEFLQKVLLLPDVLECHRVAGQDSYLLKVKTANTRSLDSLLVG 122 Query: 127 ELKSLPGIVRTRTTIILGTVKETPNAPLPP 156 L+++ G+ RT+TTI+L ++KE + +PP Sbjct: 123 TLRTIAGVTRTQTTIVLTSMKEDTHVRVPP 152 >B4WI65.1 B4WI65_9SYNE Transcriptional regulator, AsnC family Length = 155 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 62/152 (40%), Positives = 94/152 (61%) Query: 7 MDAIDYKIIRAVMDNGRITWAEXXXXXXXXXXXXXDRVRKLEEQGMIKGYTALIDAESAG 66 +D +D I+ + GR+ W+ DRVR+LE+ G++ GY A ++ E G Sbjct: 3 IDELDRSILAVLTVEGRVKWSALAERFGVSAPAIADRVRRLEKAGVLLGYAAKLNPEVLG 62 Query: 67 YGLGALIAVSLERPVHRQAFLELVQKLPEIQECHHTAGDDDYVLKVRCRGTRDLDRIISG 126 +GL A + V+LE P +RQ F+ VQ +Q CHH G+ DY+LK+ CR T +L++++S Sbjct: 63 FGLTAFVTVTLEHPRYRQGFVAYVQANNRVQACHHIVGEGDYLLKICCRSTSELEQLLSE 122 Query: 127 ELKSLPGIVRTRTTIILGTVKETPNAPLPPSE 158 ELK+LPGIV+TRTTI L ++K+T P+ E Sbjct: 123 ELKALPGIVQTRTTISLRSIKDTAAVPIEAEE 154 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 878,628,513 Number of extensions: 30075915 Number of successful extensions: 87526 Number of sequences better than 1.0e-05: 4028 Number of HSP's gapped: 84742 Number of HSP's successfully gapped: 4028 Length of query: 161 Length of database: 3,060,696,203 Length adjustment: 121 Effective length of query: 40 Effective length of database: 1,920,753,388 Effective search space: 76830135520 Effective search space used: 76830135520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)