BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0155.0001.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6LZB5.1 A6LZB5_CLOB8 Transcriptional regulator, PadR-like family     115   9e-25
B0A7U1.1 B0A7U1_9CLOT Putative uncharacterized protein                107   3e-22
B1B9D8.1 B1B9D8_CLOBO Transcriptional regulator, PadR family          105   1e-21
C4B695.1 C4B695_CLOBO Putative transcriptional regurator              104   3e-21
C4L5F0.1 C4L5F0_EXISA Transcriptional regulator, PadR-like family     103   4e-21

>A6LZB5.1 A6LZB5_CLOB8 Transcriptional regulator, PadR-like family
          Length = 110

 Score =  115 bits (289), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 77/110 (70%), Gaps = 2/110 (1%)

Query: 1   LEFEKELLKGYIDIILISIVKEKPMYGYEIAKKVRDISSGAFDLKEATLYMALKRLEKQG 60
           +E +KE+LKG ID ILI+++ + PMYGYE+ KK R+IS   F++KE TLY++LKRLEK  
Sbjct: 1   MEIDKEVLKGCIDTILIALLNDTPMYGYELIKKAREISDQTFEIKEGTLYLSLKRLEKNS 60

Query: 61  VVEAFWGGEHEASGGGRRKYYRLLAAGEERLRGSRQGWTIFRNFMDSLMG 110
            +E++W  +   SGGGRRKYY++   G+E L   +  W++  N M+  +G
Sbjct: 61  YLESYW--DDNESGGGRRKYYKITPIGKEYLHKKKDEWSLLNNIMNKFLG 108


>B0A7U1.1 B0A7U1_9CLOT Putative uncharacterized protein
          Length = 112

 Score =  107 bits (268), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 74/112 (66%), Gaps = 2/112 (1%)

Query: 1   LEFEKELLKGYIDIILISIVKEKPMYGYEIAKKVRDISSGAFDLKEATLYMALKRLEKQG 60
           +E  KE LKG+ID I++SI+ EK  YGYEIAK V+   +  F+LKE T+Y+ALKR+E +G
Sbjct: 2   MELNKEALKGHIDTIILSILNEKDCYGYEIAKTVKAKCNNIFELKEGTMYLALKRMESKG 61

Query: 61  VVEAFWGGEHEASGGGRRKYYRLLAAGEERLRGSRQGWTIFRNFMDSLMGRE 112
            +E++W    E S GGRRKYY++   G+E  +  ++ W   +  M S +G E
Sbjct: 62  FIESYWS--QEESAGGRRKYYKMTDLGKETYQTKKKEWFFIKEVMGSFLGEE 111


>B1B9D8.1 B1B9D8_CLOBO Transcriptional regulator, PadR family
          Length = 110

 Score =  105 bits (263), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 77/106 (72%), Gaps = 2/106 (1%)

Query: 1   LEFEKELLKGYIDIILISIVKEKPMYGYEIAKKVRDISSGAFDLKEATLYMALKRLEKQG 60
           +E +KE++KGYI+ I++SI+ ++ +YGYEI+K++RDIS   F++KE T+Y+ LKRLEK  
Sbjct: 1   MEIDKEMIKGYIESIILSILLKEDLYGYEISKRIRDISKNKFEIKEGTMYVVLKRLEKNE 60

Query: 61  VVEAFWGGEHEASGGGRRKYYRLLAAGEERLRGSRQGWTIFRNFMD 106
           ++  +W  +   SGGGRR+YY++   G + L+  ++ W  F+N +D
Sbjct: 61  LISPYW--DDTESGGGRRRYYKITKEGIDYLKNKKEQWLFFKNIID 104


>C4B695.1 C4B695_CLOBO Putative transcriptional regurator
          Length = 110

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 75/108 (69%), Gaps = 2/108 (1%)

Query: 1   LEFEKELLKGYIDIILISIVKEKPMYGYEIAKKVRDISSGAFDLKEATLYMALKRLEKQG 60
           +E +KE+LKGYI+ I++S++  + +YGYEI+K++R+IS   F++KE T+Y+ LKRLE   
Sbjct: 1   MEVDKEMLKGYIESIILSVLLNEDLYGYEISKRIRNISENTFEIKEGTMYVVLKRLENNK 60

Query: 61  VVEAFWGGEHEASGGGRRKYYRLLAAGEERLRGSRQGWTIFRNFMDSL 108
           ++  +W  +   SGGGRR+YY++ + G   L+  +  W  F+N +D+ 
Sbjct: 61  LISPYW--DDTESGGGRRRYYKITSEGINYLKNKKVQWIFFKNIIDTF 106


>C4L5F0.1 C4L5F0_EXISA Transcriptional regulator, PadR-like family
          Length = 118

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 75/112 (66%), Gaps = 2/112 (1%)

Query: 1   LEFEKELLKGYIDIILISIVKEKPMYGYEIAKKVRDISSGAFDLKEATLYMALKRLEKQG 60
           +E +KE+LKG+ID +++S++  + MYGYEIAK V   +  AF+LKE TLY++LKRLEK+G
Sbjct: 1   MEIDKEMLKGHIDTMILSLLNTQDMYGYEIAKVVHTRTDEAFELKEGTLYLSLKRLEKKG 60

Query: 61  VVEAFWGGEHEASGGGRRKYYRLLAAGEERLRGSRQGWTIFRNFMDSLMGRE 112
            VE++WG E     GGRRKYYR+   G+  L   +  W + +  M+  +  E
Sbjct: 61  SVESYWGDEQ--GPGGRRKYYRITTDGQAVLARKKVEWRLVKQLMNLFLHEE 110


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 661,503,797
Number of extensions: 25315045
Number of successful extensions: 64270
Number of sequences better than 1.0e-05: 728
Number of HSP's gapped: 64251
Number of HSP's successfully gapped: 728
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)