BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0050.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9G0.1 B1D9G0_9BACL Transcriptional regulator, AraC family 246 1e-63 B3JN51.1 B3JN51_9BACE Putative uncharacterized protein 114 1e-23 C3QF15.1 C3QF15_9BACE Transcriptional regulator 100 2e-19 A6KXZ8.1 A6KXZ8_BACV8 Transcriptional regulator 100 3e-19 A7M0H7.1 A7M0H7_BACOV Putative uncharacterized protein 100 3e-19 >B1D9G0.1 B1D9G0_9BACL Transcriptional regulator, AraC family Length = 288 Score = 246 bits (629), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 127/288 (44%), Positives = 174/288 (60%), Gaps = 7/288 (2%) Query: 4 MSEVMDYMISPYPVRIIDPKVESSRLRLKAIRIGQAGHLPGRIWFRSNVVFEHWALVFIL 63 M+++MDYMIS P+R+ID V+ ++L ++++ I G+LPGR FR VF++WA+V+I Sbjct: 1 MAQIMDYMISSQPLRMIDLTVDPAKLSVRSLVIRNVGYLPGRTHFRQGAVFQYWAIVYIA 60 Query: 64 SGNGTYMENGGRIQQVRAGSLFFFRPGCSYSFGPAPGCNWDEYYINFNGTRVAEWVESGL 123 G+GTY + G Q+V AGSLF F+PG Y +GP PG WDEYY GTR EW+E Sbjct: 61 GGSGTYRVDHGEAQRVTAGSLFLFQPGFHYDYGPDPGGYWDEYYFTIEGTRYREWLEHWP 120 Query: 124 LEGGTVFDAHASQELASVFEQVLALMEGGVPADADRAAAMLEGLLLE----CSLITEGHH 179 + TV + +++ ALM+ G PADADRAA LE LL + C Sbjct: 121 ILPNTVMHPGEDASSQNRIDRIFALMDSGTPADADRAALTLESLLYDWVQSCQSSPAAQG 180 Query: 180 RTRQPDLFPLIREELNACIYGLPDLQGIAAKHHISMSTLRRLVRHSSGYPLHEYIHRLKM 239 +T + + E L+ ++ D A +HH ++STLRR V +G+ LHEY+HRLKM Sbjct: 181 KTAR---LAQLLEALSGTLHEPFDAAAFAERHHWALSTLRRTVSEYTGFALHEYVHRLKM 237 Query: 240 AEAKHLLLNTSLQVKAIAGMLHYADSFYFSRLFKKYMGVSPLICRNSL 287 AEAK+ LLNT VK IA L Y D FYFSRLFKK G +P + R ++ Sbjct: 238 AEAKNRLLNTEQTVKEIAAALGYGDVFYFSRLFKKITGEAPRLFRRNM 285 >B3JN51.1 B3JN51_9BACE Putative uncharacterized protein Length = 300 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 11/240 (4%) Query: 53 VFEHWALVFILSGNGTYMENGGRIQQVRAGSLFFFRPGCSYSFGPAPGCNWDEYYINFNG 112 + + L++I G GT+ +G + + G+L PG +++ P W+EYYI F G Sbjct: 60 ILREYQLLYITKGKGTFASDGTPERNIGKGNLIVLFPGQWHTYSPDVQTGWNEYYIGFEG 119 Query: 113 TRVAEWVESGLL-EGGTVFDAHASQELASVFEQVLALMEGGVPADADRAAAMLEGLLLEC 171 + + ++V +G L + V D ++EL ++F Q L + E AD + L G+LL Sbjct: 120 SFIDQFVRNGFLSKEDQVLDIGLNEELVTLFSQALDVAE----ADKSASQQYLSGILLHI 175 Query: 172 --SLITEGHHRTRQPDLFPLIREE----LNACIYGLPDLQGIAAKHHISMSTLRRLVRHS 225 + + ++ + D E+ +N + D + +A K +IS S R+ + Sbjct: 176 IGMIFSISKNKEFEKDNVAEKMEQAKIIMNENVCKEIDPEELAEKLNISYSWFRKTFKKY 235 Query: 226 SGYPLHEYIHRLKMAEAKHLLLNTSLQVKAIAGMLHYADSFYFSRLFKKYMGVSPLICRN 285 +GY +Y LK+ +AK +L+NTS VK I M+ Y + +FS LFKK G++PL R+ Sbjct: 236 TGYSPAKYFQELKLRKAKQILINTSYPVKEICFMIGYTSTEHFSNLFKKNTGLTPLEYRS 295 >C3QF15.1 C3QF15_9BACE Transcriptional regulator Length = 299 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 11/240 (4%) Query: 53 VFEHWALVFILSGNGTYMENGGRIQQVRAGSLFFFRPGCSYSFGPAPGCNWDEYYINFNG 112 V + LV+I G G + + +QV G L PG +++ P W EYYI F G Sbjct: 59 VLREYQLVYITKGRGLFSSDSTSEKQVCKGRLMVLFPGQWHTYRPLRQTGWTEYYIGFEG 118 Query: 113 TRVAEWVESGLL-EGGTVFDAHASQELASVFEQVLALMEGGVPADADRAAAMLEGLLLEC 171 + V+ L + + + ++EL S+F + LA+ E AD A L G++L Sbjct: 119 PMIDAIVDDAFLSQEQQILEIGLNEELVSLFSRALAVAE----ADKISAQQYLSGIVLHM 174 Query: 172 S---LITEGHHRTRQPDLFPLIREE---LNACIYGLPDLQGIAAKHHISMSTLRRLVRHS 225 L + D+ I + +N + G D + +A + +IS S RR+ + Sbjct: 175 IGMILSVSKNKVFEMSDVDQKIEQAKIIMNENVSGNVDPEELAMRLNISYSWFRRVFKEY 234 Query: 226 SGYPLHEYIHRLKMAEAKHLLLNTSLQVKAIAGMLHYADSFYFSRLFKKYMGVSPLICRN 285 +GY +Y LK+ +AK +L+ TS VK I+ L + + YF FKK G++PL R+ Sbjct: 235 TGYAPAKYFQELKLRKAKQMLVGTSQSVKEISFFLGFQSTEYFFSFFKKRTGLTPLEYRS 294 >A6KXZ8.1 A6KXZ8_BACV8 Transcriptional regulator Length = 306 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/267 (26%), Positives = 125/267 (46%), Gaps = 16/267 (5%) Query: 31 LKAIRIGQA---GHLPGRIWFRSNV--VFEHWALVFILSGNGTYMENGGRIQQVRAGSLF 85 +AIR G + P +F + V + LV+I G GT+ + + G + Sbjct: 31 FQAIRAGSVYPPRNHPDAYYFTAQKGRVLHEYQLVYITKGRGTFASDTTPSVDISKGQIL 90 Query: 86 FFRPGCSYSFGPAPGCNWDEYYINFNGTRVAEWVESGLL-EGGTVFDAHASQELASVFEQ 144 F PG +++ P W+EYYI F G + V++ + + + D ++ELAS+F + Sbjct: 91 FLFPGQWHTYAPLQKTGWNEYYIGFEGPIIDNLVKNSFISKESQILDIGINEELASLFAR 150 Query: 145 VLALMEGGVPADADRAAAMLEGLLLEC--SLITEGHHRTRQPDLFPLIREE----LNACI 198 L + E AD A L G++L +++ ++ + D E ++ + Sbjct: 151 ALEVAE----ADKTAAQQYLSGIVLHIMGAVLAISQNKRYEVDNAAQKIESAKIIMHENV 206 Query: 199 YGLPDLQGIAAKHHISMSTLRRLVRHSSGYPLHEYIHRLKMAEAKHLLLNTSLQVKAIAG 258 Y D + +A K IS S R++ + +GY +Y LK+ +AK LL+ +S+ VK I Sbjct: 207 YKDIDPEELAMKLGISYSWFRKVFKEYTGYAPAKYFQELKLRKAKQLLIESSMSVKEICY 266 Query: 259 MLHYADSFYFSRLFKKYMGVSPLICRN 285 L+Y + +F +FKK +P RN Sbjct: 267 ELNYTSTEHFFSVFKKRTNFTPTEYRN 293 >A7M0H7.1 A7M0H7_BACOV Putative uncharacterized protein Length = 299 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 70/240 (29%), Positives = 113/240 (47%), Gaps = 11/240 (4%) Query: 53 VFEHWALVFILSGNGTYMENGGRIQQVRAGSLFFFRPGCSYSFGPAPGCNWDEYYINFNG 112 V + LV+I G G + + +QV G L PG +++ P W EYYI F G Sbjct: 59 VLREYQLVYITKGRGLFSSDSTSEKQVCKGRLMVLFPGQWHTYRPLRQTGWREYYIGFEG 118 Query: 113 TRVAEWVESGLL-EGGTVFDAHASQELASVFEQVLALMEGGVPADADRAAAMLEGLLLEC 171 + V+ L + + + ++EL S+F + LA+ E AD A L G++L Sbjct: 119 PMIDAIVDDAFLSQEQQILEIGLNEELVSLFSRALAVAE----ADKISAQQYLSGIVLHM 174 Query: 172 S---LITEGHHRTRQPDLFPLIREE---LNACIYGLPDLQGIAAKHHISMSTLRRLVRHS 225 L + D+ I + +N + G D + +A + +IS S RR+ + Sbjct: 175 IGMILSVSKNKVFEMSDVDQKIEQAKIIMNENVSGNVDPEELAMRLNISYSWFRRVFKEY 234 Query: 226 SGYPLHEYIHRLKMAEAKHLLLNTSLQVKAIAGMLHYADSFYFSRLFKKYMGVSPLICRN 285 +GY +Y LK+ +AK +L+ TS VK I+ L + + YF FKK G++PL R+ Sbjct: 235 TGYAPAKYFQELKLRKAKQMLVGTSQSVKEISFFLGFQSTEYFFSFFKKRTGLTPLEYRS 294 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,760,340,420 Number of extensions: 73641335 Number of successful extensions: 215201 Number of sequences better than 1.0e-05: 488 Number of HSP's gapped: 215717 Number of HSP's successfully gapped: 488 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)