BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0047.p (190 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6TKJ8.1 A6TKJ8_ALKMQ Two component transcriptional regulator, L... 181 4e-44 C0GEE4.1 C0GEE4_9FIRM Two component transcriptional regulator, L... 174 3e-42 B1HUW2.1 B1HUW2_LYSSC Two-component response regulator-like protein 137 5e-31 A3I3R2.1 A3I3R2_9BACI YhcZ 137 5e-31 C2WG50.1 C2WG50_BACCE Two component transcriptional regulator, LuxR 136 9e-31 >A6TKJ8.1 A6TKJ8_ALKMQ Two component transcriptional regulator, LuxR family Length = 205 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 88/179 (49%), Positives = 134/179 (74%), Gaps = 1/179 (0%) Query: 1 MQSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLT 60 ++ ++H EA N +EA+ ++ + P++ LIDL L + GL+++ AR++G+ +KFI+LT Sbjct: 22 LEKDVHEIKEAENIEEAIDMMAKFSPEITLIDLNLGRQDGLEIVNKARAKGMATKFIVLT 81 Query: 61 SSASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKMR-MSGNSP 119 SS+ REDFL+A E VDGY+LKEA E++L+A+++V +G+K+ DP +++ + + NS Sbjct: 82 SSSKREDFLRAREAGVDGYILKEAFAEDILYALRIVLRGKKFIDPEVIQYQTSDIRENSH 141 Query: 120 TDELTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAALYAN 178 DELTP+E++VL ELG+G SN EI +LFISE TVKKHVS IL+KL++ RTQAAL+ N Sbjct: 142 LDELTPRERDVLTELGKGLSNFEIGKQLFISEHTVKKHVSNILSKLELNHRTQAALFVN 200 >C0GEE4.1 C0GEE4_9FIRM Two component transcriptional regulator, LuxR family Length = 205 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 86/184 (46%), Positives = 126/184 (68%) Query: 1 MQSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLT 60 ++ + G A NG EA+ ++E+ PD+ L+DL+L E GLD+I+ ARS K+I+LT Sbjct: 22 LEEDFEICGFAANGLEAMEVLEKHSPDVALVDLRLPGEHGLDIIEKARSINSTCKYIVLT 81 Query: 61 SSASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDPGLMEDKMRMSGNSPT 120 S A++E+ +A + VDGY+LKE LPEEL+ +++++HKGRKY+DP +++ + Sbjct: 82 SYATKEEIKQAMALEVDGYILKETLPEELITSVRMIHKGRKYFDPVIVQHALEEKNEDKL 141 Query: 121 DELTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAALYANAV 180 ELT +E EVL L +G +N++IA LFISE TVKKHV QIL KL++ DRTQAALY + Sbjct: 142 SELTTREMEVLKFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDRTQAALYGVSQ 201 Query: 181 GLTK 184 L + Sbjct: 202 ALNR 205 >B1HUW2.1 B1HUW2_LYSSC Two-component response regulator-like protein Length = 215 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/188 (40%), Positives = 116/188 (61%), Gaps = 5/188 (2%) Query: 2 QSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTS 61 Q ++ GEA NG EA+ + E QPD++L+DL + + G+ K +++ + ++LTS Sbjct: 24 QKDIEVVGEAKNGHEAVSLAESIQPDIILMDLVMPELDGIQATKRIKAKFPKIEILMLTS 83 Query: 62 SASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDP---GLMEDKMRMSGNS 118 + R+ + A E GY LK+ P+EL+ +I+ + +G P +E + + N+ Sbjct: 84 FSDRDHVVPAMEAGAAGYQLKDIEPDELVLSIRRIMRGENTLHPEATTTLEMDRQEAQNA 143 Query: 119 PT--DELTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAALY 176 P + LTP+E++VL EL +G SNREIAS LF++E TVK H+S I KLQV DRTQAALY Sbjct: 144 PHSLNPLTPREQDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALY 203 Query: 177 ANAVGLTK 184 A GLT+ Sbjct: 204 AVKHGLTE 211 >A3I3R2.1 A3I3R2_9BACI YhcZ Length = 215 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/188 (40%), Positives = 116/188 (61%), Gaps = 5/188 (2%) Query: 2 QSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTS 61 Q ++ GEA NG EA+ + E QPD++L+DL + + G+ K +++ + ++LTS Sbjct: 24 QKDIEVVGEAKNGHEAVSLAESIQPDIILMDLVMPELDGIQATKRIKAKFPKIEILMLTS 83 Query: 62 SASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDP---GLMEDKMRMSGNS 118 + R+ + A E GY LK+ P+EL+ +I+ + +G P +E + + N+ Sbjct: 84 FSDRDHVVPAMEAGAAGYQLKDIEPDELVLSIRRIMRGENTLHPEATTTLEMDRQEAQNA 143 Query: 119 PT--DELTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQAALY 176 P + LTP+E++VL EL +G SNREIAS LF++E TVK H+S I KLQV DRTQAALY Sbjct: 144 PHSLNPLTPREQDVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALY 203 Query: 177 ANAVGLTK 184 A GLT+ Sbjct: 204 AVKHGLTE 211 >C2WG50.1 C2WG50_BACCE Two component transcriptional regulator, LuxR Length = 215 Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 114/191 (59%), Gaps = 9/191 (4%) Query: 2 QSNLHFAGEATNGQEALMIIEETQPDLVLIDLKLADESGLDVIKAARSRGLISKFILLTS 61 Q +L GEA NGQEALM +EETQPD+VL+DL + + G++ + K ++LTS Sbjct: 25 QEDLELVGEANNGQEALMKVEETQPDIVLMDLYMPEMDGIEATACIKKEYPNVKVLVLTS 84 Query: 62 SASREDFLKAEEVLVDGYVLKEALPEELLFAIQLVHKGRKYYDP---------GLMEDKM 112 + + L A + GY+LK+ P++L+ AI+ +KG P L +++ Sbjct: 85 FSDQAHVLPALKAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIASSLLSQTLPQEEA 144 Query: 113 RMSGNSPTDELTPKEKEVLIELGQGASNREIASRLFISEFTVKKHVSQILAKLQVADRTQ 172 + N D LT +E EVL L +G SN+EIAS L I+E TVK HVS IL+KLQ++DRTQ Sbjct: 145 EVPSNIHVDVLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLQLSDRTQ 204 Query: 173 AALYANAVGLT 183 AALYA G+ Sbjct: 205 AALYAVKNGIV 215 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,003,251,861 Number of extensions: 37983347 Number of successful extensions: 169449 Number of sequences better than 1.0e-05: 6856 Number of HSP's gapped: 169131 Number of HSP's successfully gapped: 6862 Length of query: 190 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 62 Effective length of database: 1,854,806,283 Effective search space: 114997989546 Effective search space used: 114997989546 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 127 (53.5 bits)