BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0046.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9M2.1 B1D9M2_9BACL Lipopolysaccharide biosynthesis protein 145 3e-33 B1DJF2.1 B1DJF2_9BACL Lipopolysaccharide biosynthesis protein 137 7e-31 B1D9H2.1 B1D9H2_9BACL Lipopolysaccharide biosynthesis protein 130 1e-28 B4BP31.1 B4BP31_9BACI Lipopolysaccharide biosynthesis protein 129 2e-28 C3IZ10.1 C3IZ10_9BACI Lipopolysaccharide biosynthesis protein 125 3e-27 >B1D9M2.1 B1D9M2_9BACL Lipopolysaccharide biosynthesis protein Length = 254 Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 135/243 (55%), Gaps = 4/243 (1%) Query: 2 EKTILDYINLIKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXX--XXXXXXX 59 E + +Y +++KRL LI++FVL+ + +K F P+Y AS +++ Sbjct: 4 ELDLREYFLIVRKRLLLIVIFVLVCTVASGVYTKMFKDPIYEASTKIVVNQPSQQLAVGQ 63 Query: 60 XXXXXXXXXXXXIESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINL 119 I++YKE++K+P I+ V ++P+ L+ + L K+ + S +QV+ L Sbjct: 64 LDLNQINSNIKMIDTYKEVIKTPAILGKVAEKYPQLGLSAKELTKKISVSSVNGTQVMTL 123 Query: 120 SVQDESYTKAATIVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIIS 179 +VQD SY +AA IVNA+S F + +P + ++NV+ L A D P PV+ T+NIII+ Sbjct: 124 AVQDVSYQQAAKIVNAISLVFQQEIPNIFQVENVSILNEALLDDQPAPVSPNVTLNIIIA 183 Query: 180 FVVSLMAAIGIILLLETLNGTLRTEKEAEFDLGLPVIASIPTIRKRDL--GKSANANARV 237 FVVSLM A+GI LLE ++ T++TE + + LG P +A + + + G S N + Sbjct: 184 FVVSLMIAVGIAFLLEYMDDTIKTETDVQRYLGQPTLAMVARVEASEFQTGSSRTENRQK 243 Query: 238 GEG 240 G Sbjct: 244 AGG 246 >B1DJF2.1 B1DJF2_9BACL Lipopolysaccharide biosynthesis protein Length = 251 Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 84/243 (34%), Positives = 130/243 (53%), Gaps = 6/243 (2%) Query: 8 YINLIKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXXXXXXXXXXXXXX--X 65 Y ++ K+ WLI V+++ T S F P+Y A L+ Sbjct: 6 YAQILLKKWWLIAAIVIVAVVATGVKSYLFTTPIYQAKATLIVNQSPQQAGVEALNLGLL 65 Query: 66 XXXXXXIESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINLSVQDES 125 I SYK+I++S IM+ VV ++P +T L+ K++++S+++SQV+++ S Sbjct: 66 QSNVMLINSYKKIVESAYIMEKVVEQNPSLGITADQLSQKVKVESADESQVMDIMYTGAS 125 Query: 126 YTKAATIVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVVSLM 185 Y +AA IVN VS F +P +M +DNVT L AD D P P+N+ +N++IS +VS M Sbjct: 126 YKEAAQIVNTVSAIFKDQIPHIMKVDNVTILDKADEKDIPSPINNSPILNMLISLIVSCM 185 Query: 186 AAIGIILLLETLNGTLRTEKEAEFDLGLPVIASIPTIRKRDLGKSANANAR----VGEGA 241 A+GII LL+ L+ T++ E E L LPV+A I I K+D+G N + + E Sbjct: 186 LAVGIIFLLDYLDDTIKNEAEMLQTLDLPVLALINKINKQDMGLKNKPNVKMKKELNEAT 245 Query: 242 YVT 244 Y T Sbjct: 246 YAT 248 >B1D9H2.1 B1D9H2_9BACL Lipopolysaccharide biosynthesis protein Length = 260 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 69/169 (40%), Positives = 98/169 (57%) Query: 72 IESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINLSVQDESYTKAAT 131 I +YKEI+K+P IM VV +HPE LT Q L ++ S +QV+ +S D Y +AA Sbjct: 82 INTYKEIIKTPAIMDLVVKKHPELGLTTQQLMHNIRFSSVNGTQVVTISYLDTDYKRAAQ 141 Query: 132 IVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVVSLMAAIGII 191 +VN VS F + +P +M +DNV L AD D P V + +NI I FV + + +I ++ Sbjct: 142 VVNTVSYVFQQQIPLIMKVDNVYILHTADSNDQPVKVKPETKLNIAIGFVAAFLLSITLV 201 Query: 192 LLLETLNGTLRTEKEAEFDLGLPVIASIPTIRKRDLGKSANANARVGEG 240 L L + TLRTE + E LGLP +A+IP I++ DL A A + G Sbjct: 202 LALNYFDDTLRTESDVERYLGLPTLAAIPNIKQGDLKPKALAIGKTTIG 250 >B4BP31.1 B4BP31_9BACI Lipopolysaccharide biosynthesis protein Length = 247 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 1/224 (0%) Query: 12 IKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXXXXXXXXXXXXXXXXXXXXX 71 ++KRLWLI++ ++ + VS + P+Y AS Q+L Sbjct: 14 LRKRLWLIVLITALATMVSGVVSYFLLTPIYQASTQILVNQAKSEQQMYNVGEIQTNVQL 73 Query: 72 IESYKEILKSPTIMKSVVAEHPEFNLTEQALAGKLQIKSSEKSQVINLSVQDESYTKAAT 131 I +Y I+KSPTI++ V E + + T AL G++Q+ S + SQV ++VQD AA Sbjct: 74 INTYSVIIKSPTILEKVKDEL-QLDQTLDALNGQIQVSSEKDSQVFAVTVQDPDPAMAAK 132 Query: 132 IVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVVSLMAAIGII 191 I N ++ F + +MN+DNVT L+ A+ + PV +N+ I+FVV LM +G+ Sbjct: 133 IANKTAEVFKNEIVNIMNIDNVTILSKAEVKEHQAPVKPKPLLNMAIAFVVGLMTGVGLA 192 Query: 192 LLLETLNGTLRTEKEAEFDLGLPVIASIPTIRKRDLGKSANANA 235 LLE L+ T++TE++ E LGLPV+ ++ I K + +A Sbjct: 193 FLLEYLDNTIKTEEDVERHLGLPVLGTVSLITAEGDQKKKHESA 236 >C3IZ10.1 C3IZ10_9BACI Lipopolysaccharide biosynthesis protein Length = 247 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 120/220 (54%), Gaps = 3/220 (1%) Query: 4 TILDYINLIKKRLWLIIVFVLISCATTFYVSKNFVMPVYSASGQLLXXXXXXXXXXXXXX 63 ++ + + ++KRLWLI++ ++ + VS + P+Y AS Q+L Sbjct: 6 SLRELFDTLRKRLWLIVLITALATVVSGVVSYFILTPIYEASTQILVNQAKSEQQLYNFN 65 Query: 64 XXXXXXXXIESYKEILKSPTIMKSVVAE-HPEFNLTEQALAGKLQIKSSEKSQVINLSVQ 122 I +Y I+KSPTI++ V E H + L E L ++Q+ S + SQV +++VQ Sbjct: 66 EIQTNVQLINTYSVIIKSPTILEKVKDELHLDRTLDE--LNEQIQVSSEKDSQVFSVTVQ 123 Query: 123 DESYTKAATIVNAVSQTFIRSLPALMNLDNVTFLTPADPADAPGPVNSGSTMNIIISFVV 182 D AA I N ++ F + +MN+DNVT L+ A+ + PV +N+ I+FVV Sbjct: 124 DPDPAMAAKIANKTAEVFKNEIVKIMNIDNVTILSKAEVKEHQAPVKPKPLLNMAIAFVV 183 Query: 183 SLMAAIGIILLLETLNGTLRTEKEAEFDLGLPVIASIPTI 222 LM +G+ LLE L+ T++TE++ E LGLPV+ ++ I Sbjct: 184 GLMTGVGLAFLLEYLDNTIKTEEDVEKHLGLPVLGAVSLI 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.357 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,145,491,870 Number of extensions: 38125500 Number of successful extensions: 118647 Number of sequences better than 1.0e-05: 468 Number of HSP's gapped: 118205 Number of HSP's successfully gapped: 468 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)