BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0045.p (213 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D9M3.1 B1D9M3_9BACL Capsular exopolysaccharide family EC=2.7.10.2 149 1e-34 B1DJF8.1 B1DJF8_9BACL Capsular exopolysaccharide family EC=2.7.10.2 149 1e-34 Q3XYS6.1 Q3XYS6_ENTFC Exopolysaccharide synthesis protein EC=2.7... 148 4e-34 C1PC45.1 C1PC45_BACCO Capsular exopolysaccharide family EC=2.7.10.2 146 1e-33 B3QXQ6.1 B3QXQ6_CHLT3 Capsular exopolysaccharide family EC=2.7.10.2 145 2e-33 >B1D9M3.1 B1D9M3_9BACL Capsular exopolysaccharide family EC=2.7.10.2 Length = 230 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 71/208 (34%), Positives = 129/208 (62%), Gaps = 2/208 (0%) Query: 6 KSLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSNLAVSF 65 + LI+ NP S +SE++R+LRT I + S Q ++ +SA GEGK+T ++NLAV+F Sbjct: 8 RRLISVANPRSPVSETYRTLRTNIEFAAI--DSALQVIMVSSAGPGEGKSTTIANLAVTF 65 Query: 66 VQDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAVIPAGI 125 Q +KVV++D ++R P H F++ GL++ + + ++++ ++ N+ VI AG Sbjct: 66 SQSDRKVVLIDADMRKPTAHKTFQISNRFGLSSVISQQSTLQEVIQATDIPNMDVITAGP 125 Query: 126 TSVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVARHGKT 185 +P ++L S +M ALL+EL++ +D++L+D P + +DA+I A SDG+++V G+ Sbjct: 126 IPPNPAEMLASKRMTALLDELRTMYDIVLVDTPPLLAVTDAQIAATKSDGVVLVVDQGRV 185 Query: 186 KRESLKKLKGLMEQTGVKILGIAMNQTR 213 KR+ +K ++ +ILG+ +N + Sbjct: 186 KRQFAQKAIQNLQNVNARILGVVLNNVK 213 >B1DJF8.1 B1DJF8_9BACL Capsular exopolysaccharide family EC=2.7.10.2 Length = 229 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 74/209 (35%), Positives = 130/209 (62%), Gaps = 2/209 (0%) Query: 5 NKSLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSNLAVS 64 + L+ LNPSS ++E++R+LRT I+ + + Q L+ SA+ GEGK+T++SNLAV+ Sbjct: 9 DNRLVVLLNPSSPVAEAYRTLRTNIQYSSV--DAPIQLLMAASAQSGEGKSTVISNLAVA 66 Query: 65 FVQDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAVIPAG 124 + +GK+V+++D +LR P +H +F GL L + ++++ G + NL +I +G Sbjct: 67 YALEGKRVLLIDTDLRKPTIHRIFSQTNRQGLTNLLTSQSTLQEVIKDGGIDNLEIITSG 126 Query: 125 ITSVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVARHGK 184 T +P +LLGS +M +LEEL++ +DLIL D P + +D+ I++ DG+++V GK Sbjct: 127 PTPPNPAELLGSHRMKVILEELRARYDLILFDTPPVLPVTDSLIMSSYCDGVLLVIHAGK 186 Query: 185 TKRESLKKLKGLMEQTGVKILGIAMNQTR 213 K+ ++K K ++ +I+G NQ + Sbjct: 187 VKKAYVRKAKERLDFVQSRIIGAVFNQMK 215 >Q3XYS6.1 Q3XYS6_ENTFC Exopolysaccharide synthesis protein EC=2.7.1.112 Length = 232 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/204 (36%), Positives = 125/204 (61%), Gaps = 1/204 (0%) Query: 7 SLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSNLAVSFV 66 SLIT NPSS ISE +R++RT I Q G + ++ TS+ GEGK+T +N+AV F Sbjct: 16 SLITLTNPSSPISEQYRTIRTNI-QFASAAGQQIKTIVVTSSGPGEGKSTTAANIAVVFA 74 Query: 67 QDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAVIPAGIT 126 + G++V++VD +LR P ++ F++ + GL+ L V D+ + NL+++P+G Sbjct: 75 KSGQRVLLVDADLRKPVVYKTFQLNNASGLSTALSSLGSVVDVIQRTPVENLSILPSGPK 134 Query: 127 SVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVARHGKTK 186 +P +LL S +M +L E + FD+++ D P V +DA+I++ +DG ++V R ++ Sbjct: 135 PPNPSELLSSPRMDQILAEARQLFDVVIFDMPPVVAVTDAQIMSSKTDGTLLVVRENTSR 194 Query: 187 RESLKKLKGLMEQTGVKILGIAMN 210 +ESL K KGL++ ++LG+ N Sbjct: 195 KESLNKAKGLLDMVQARVLGVVYN 218 >C1PC45.1 C1PC45_BACCO Capsular exopolysaccharide family EC=2.7.10.2 Length = 247 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/213 (37%), Positives = 124/213 (58%), Gaps = 2/213 (0%) Query: 1 MLRLNKSLITDLNPSSHISESFRSLRTYIRQLGLLKGSGGQALLFTSAEGGEGKTTILSN 60 +L + LI LNP S ISE FR++RT I + + Q L+ TS+ GEGK+TI+ N Sbjct: 24 LLNTRRKLIAKLNPKSPISEQFRTIRTNISFSSV--DNDLQLLMVTSSGPGEGKSTIVGN 81 Query: 61 LAVSFVQDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAV 120 LAV F Q GK+V++VD +LR P +H F + + GL L + +++ AV ++ +L V Sbjct: 82 LAVVFAQQGKRVLLVDADLRRPTVHYTFGMTNTFGLTTVLTKQGTLEETAVKTDVDHLHV 141 Query: 121 IPAGITSVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVA 180 + +G +P +LL S M +E K +D+ILLD P + +DA++L DG I+V Sbjct: 142 LTSGPIPPNPAELLSSKAMKEFFKEAKEQYDIILLDTPPVLAVTDAQVLTNQCDGTILVV 201 Query: 181 RHGKTKRESLKKLKGLMEQTGVKILGIAMNQTR 213 GK + E++KK K L+E +LG+ +N + Sbjct: 202 SSGKAEVEAVKKAKELLESANANLLGVVLNNKK 234 >B3QXQ6.1 B3QXQ6_CHLT3 Capsular exopolysaccharide family EC=2.7.10.2 Length = 798 Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/207 (35%), Positives = 127/207 (61%), Gaps = 4/207 (1%) Query: 8 LITDLNPSSHISESFRSLRTYIRQLGL--LKGSGGQALLF--TSAEGGEGKTTILSNLAV 63 L+T +P S +SE++R+LRT I G+ GS Q L++ TS+ EGK+T +SNLA+ Sbjct: 545 LVTHFDPKSSVSEAYRTLRTNILFSGVHDFNGSKKQGLIYIITSSSPKEGKSTTISNLAI 604 Query: 64 SFVQDGKKVVVVDCNLRHPGLHSVFEVEGSHGLAAYLGGREEVKDIAVYGNLANLAVIPA 123 + Q G+KV+++D +LR P +HS+F G+ YL GR ++ DI + NL +I + Sbjct: 605 TIAQGGQKVLLIDTDLRRPIIHSIFGYNKEPGITNYLVGRAQIDDIVRNSPIQNLDIITS 664 Query: 124 GITSVSPPDLLGSDKMAALLEELKSSFDLILLDAPQAVEFSDARILAPLSDGLIIVARHG 183 G +P +L+G+ +M +L+ + +D++LLD+P + +D ++LA ++DG+I+V G Sbjct: 665 GTIPPNPSELIGTQRMKDMLQLFRERYDIVLLDSPPIIAVTDPQVLAKVADGMILVLLSG 724 Query: 184 KTKRESLKKLKGLMEQTGVKILGIAMN 210 +T+ E K+ + + KI+G +N Sbjct: 725 QTQIELAKRSIDAIRKVNAKIIGFVLN 751 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,205,146,618 Number of extensions: 48656881 Number of successful extensions: 188039 Number of sequences better than 1.0e-05: 2170 Number of HSP's gapped: 187143 Number of HSP's successfully gapped: 2170 Length of query: 213 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 83 Effective length of database: 1,835,964,253 Effective search space: 152385032999 Effective search space used: 152385032999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)