BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0040.p (257 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5KUP0.1 Q5KUP0_GEOKA Teichoic acid biosynthesis 324 5e-87 B1BNH0.1 B1BNH0_CLOPE EpsP 251 4e-65 B1R3U8.1 B1R3U8_CLOPE EpsP 246 1e-63 Q8XN42.1 Q8XN42_CLOPE N-acetyl-mannosamine transferase 241 4e-62 Q97GP9.1 Q97GP9_CLOAB Teichoic acid biosynthesis protein, tagA 236 2e-60 >Q5KUP0.1 Q5KUP0_GEOKA Teichoic acid biosynthesis Length = 259 Score = 324 bits (830), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 153/245 (62%), Positives = 195/245 (79%) Query: 1 MNQVNMFDVNFDNYDFMDLLDYIDKTIQERSQSYILTCNVDHVIKLRKDKEFQTVYSQAG 60 MN++NMF++NFDN F DLL++I + + Q+YILTCNVDHV++ KDKEF +YS A Sbjct: 1 MNKINMFNINFDNITFHDLLEFIIDAKKNKKQTYILTCNVDHVVQTTKDKEFAEIYSNAD 60 Query: 61 AVVADGMPLIWASKMLGKPLKQKVSGADLFSRLGNAFEQRKYRLFFLGSAQGVPEQATKN 120 VVADG+P+IWASK+L KPLKQK+SG+D+ LGN FE+ LFFLG+A+GV ++A +N Sbjct: 61 LVVADGVPIIWASKLLKKPLKQKISGSDILPVLGNKFEKYGISLFFLGAAEGVAQKAAEN 120 Query: 121 LKAAYPGMNIVGCYSPSYGFEHNDEENQRIIEMLTESQPDIVFVGVGAPKQEKWIYRHYN 180 LK +P + IVGCYSPSYGFE N+EENQ+I+EM+ ++PD++ VGVGAPKQEKWIY++Y Sbjct: 121 LKIQFPNIKIVGCYSPSYGFEKNEEENQKILEMIKNAKPDVLMVGVGAPKQEKWIYKYYK 180 Query: 181 SYRAPISIGVGATFDFLSGSVKRAPNFMQKTGLEWFWRLSQEPGRLWKRYLVDDAQFLVL 240 Y P+SIGVGATFDF++G VKRAP FMQK GLEWFWR QEP RL+KRY V D+ FLVL Sbjct: 181 EYNVPVSIGVGATFDFIAGKVKRAPVFMQKIGLEWFWRFLQEPRRLFKRYFVQDSIFLVL 240 Query: 241 LLKEL 245 +KE Sbjct: 241 FIKEF 245 >B1BNH0.1 B1BNH0_CLOPE EpsP Length = 244 Score = 251 bits (641), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 118/238 (49%), Positives = 172/238 (72%) Query: 1 MNQVNMFDVNFDNYDFMDLLDYIDKTIQERSQSYILTCNVDHVIKLRKDKEFQTVYSQAG 60 M+++N + DN + LD ++ I ++ SY++T NVDH++KL DKEFQ VY A Sbjct: 1 MSRMNFLNTEIDNLTMNEALDRAEELIIKKKPSYVVTPNVDHIVKLENDKEFQDVYKNAD 60 Query: 61 AVVADGMPLIWASKMLGKPLKQKVSGADLFSRLGNAFEQRKYRLFFLGSAQGVPEQATKN 120 ++ DGMPLIW SK+ G P+K+K+SG+D F +L + Y LF LG+A+GV +A KN Sbjct: 61 LILTDGMPLIWISKIKGNPIKEKISGSDFFPKLCERAAKNGYSLFLLGAAEGVAAKAAKN 120 Query: 121 LKAAYPGMNIVGCYSPSYGFEHNDEENQRIIEMLTESQPDIVFVGVGAPKQEKWIYRHYN 180 L Y G+NIVG YSPSYGFE N++E +II ++ ES+PDI+ VG+GAPKQEK++Y + + Sbjct: 121 LNEKYEGLNIVGTYSPSYGFEKNEDEIDKIIRIINESKPDILAVGLGAPKQEKFLYNYRD 180 Query: 181 SYRAPISIGVGATFDFLSGSVKRAPNFMQKTGLEWFWRLSQEPGRLWKRYLVDDAQFL 238 + PIS+ +GA+ DF +G++KRAP +MQK+GLEWF+RL +EP R++KRY++DD + L Sbjct: 181 QLKVPISLAIGASIDFEAGNIKRAPKWMQKSGLEWFYRLCKEPKRMFKRYIIDDLKIL 238 >B1R3U8.1 B1R3U8_CLOPE EpsP Length = 241 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/235 (49%), Positives = 169/235 (71%) Query: 4 VNMFDVNFDNYDFMDLLDYIDKTIQERSQSYILTCNVDHVIKLRKDKEFQTVYSQAGAVV 63 +N + DN + LD ++ I ++ SY++T NVDH++KL DKEFQ VY A ++ Sbjct: 1 MNFLNTEIDNLTMNEALDRAEELIIKKKPSYVVTPNVDHIVKLENDKEFQDVYKNADLIL 60 Query: 64 ADGMPLIWASKMLGKPLKQKVSGADLFSRLGNAFEQRKYRLFFLGSAQGVPEQATKNLKA 123 DGMPLIW SK+ G P+K+K+SG+D F +L + Y LF LG+A+GV +A KNL Sbjct: 61 TDGMPLIWISKIKGNPIKEKISGSDFFPKLCERAAKNGYSLFLLGAAEGVAAKAAKNLNE 120 Query: 124 AYPGMNIVGCYSPSYGFEHNDEENQRIIEMLTESQPDIVFVGVGAPKQEKWIYRHYNSYR 183 + G+NIVG YSPSYGFE N++E +II ++ ES+PDI+ VG+GAPKQEK++Y + + + Sbjct: 121 KHEGLNIVGTYSPSYGFEKNEDEIDKIIRIINESKPDILAVGLGAPKQEKFLYNYRDQLK 180 Query: 184 APISIGVGATFDFLSGSVKRAPNFMQKTGLEWFWRLSQEPGRLWKRYLVDDAQFL 238 PIS+ +GA+ DF +G++KRAP +MQK+GLEWF+RL +EP R++KRY++DD + L Sbjct: 181 VPISLAIGASIDFEAGNIKRAPKWMQKSGLEWFYRLCKEPKRMFKRYIIDDLKIL 235 >Q8XN42.1 Q8XN42_CLOPE N-acetyl-mannosamine transferase Length = 241 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 170/240 (70%) Query: 4 VNMFDVNFDNYDFMDLLDYIDKTIQERSQSYILTCNVDHVIKLRKDKEFQTVYSQAGAVV 63 +N ++ DN + +D ++ I ++ SY++T NVDH++KL DKEFQ VY A ++ Sbjct: 1 MNFLNIEVDNLTMNEAIDRAEELIIKKKPSYVVTPNVDHIVKLENDKEFQEVYKNADLIL 60 Query: 64 ADGMPLIWASKMLGKPLKQKVSGADLFSRLGNAFEQRKYRLFFLGSAQGVPEQATKNLKA 123 DGMPLIW SK+ G P+K+K+SG+D F +L ++ Y LF LG+A+GV +A KNLK Sbjct: 61 TDGMPLIWISKIKGNPIKEKISGSDFFPKLCERAAEKGYSLFLLGAAEGVAAKAAKNLKE 120 Query: 124 AYPGMNIVGCYSPSYGFEHNDEENQRIIEMLTESQPDIVFVGVGAPKQEKWIYRHYNSYR 183 Y ++IVG YSPSYGFE D+E + IIEM+ E++PDI+ VG+GAPKQEK+++++ N Sbjct: 121 KYESLDIVGTYSPSYGFEKKDDEIKMIIEMINEAKPDILAVGLGAPKQEKFLHKYRNDLN 180 Query: 184 APISIGVGATFDFLSGSVKRAPNFMQKTGLEWFWRLSQEPGRLWKRYLVDDAQFLVLLLK 243 PIS+ +GA+ DF +G++ RAP +MQ +G EW +RL +EP R++KRY++DD + L++K Sbjct: 181 VPISLAIGASIDFEAGNINRAPKWMQNSGFEWAYRLIKEPKRMFKRYVIDDMKIFKLIIK 240 >Q97GP9.1 Q97GP9_CLOAB Teichoic acid biosynthesis protein, tagA Length = 250 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 102/236 (43%), Positives = 166/236 (70%) Query: 3 QVNMFDVNFDNYDFMDLLDYIDKTIQERSQSYILTCNVDHVIKLRKDKEFQTVYSQAGAV 62 ++ + N DN + + ++ ID I++ Y++T NVDH+++L KD+EF+ VY A + Sbjct: 5 RMKFLNTNVDNVNMKEAIEIIDGFIKDGKYHYVVTPNVDHIVRLEKDEEFKKVYENADLI 64 Query: 63 VADGMPLIWASKMLGKPLKQKVSGADLFSRLGNAFEQRKYRLFFLGSAQGVPEQATKNLK 122 + DGMPL+W SK L P+K+KVSG+DLF R+ +++Y +F LG+A+GV +A +NLK Sbjct: 65 LTDGMPLVWISKWLKTPVKEKVSGSDLFPRVCKLAAEKEYTVFILGAAEGVAHKAGENLK 124 Query: 123 AAYPGMNIVGCYSPSYGFEHNDEENQRIIEMLTESQPDIVFVGVGAPKQEKWIYRHYNSY 182 A Y G+ + G YSPS+GFE EE + IIEM+ + +PDI+ VGV APKQEK++ ++ + Sbjct: 125 AKYKGLKVAGTYSPSFGFEKKPEEIKYIIEMINDIKPDILAVGVSAPKQEKFVAQYRDEL 184 Query: 183 RAPISIGVGATFDFLSGSVKRAPNFMQKTGLEWFWRLSQEPGRLWKRYLVDDAQFL 238 + P+++ +GA+ D +G++KRAP +MQK+GLEWF+R+ ++P +++KR DD + + Sbjct: 185 KVPVALAIGASIDIEAGTLKRAPLWMQKSGLEWFYRMFRQPKKIFKRVFFDDLKII 240 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,610,662,082 Number of extensions: 68061501 Number of successful extensions: 155136 Number of sequences better than 1.0e-05: 892 Number of HSP's gapped: 154042 Number of HSP's successfully gapped: 892 Length of query: 257 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 124 Effective length of database: 1,807,701,208 Effective search space: 224154949792 Effective search space used: 224154949792 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)