BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0039.p (481 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJG0.1 B1DJG0_9BACL Putative uncharacterized protein 258 8e-67 Q393I6.1 Q393I6_BURS3 Putative uncharacterized protein 169 6e-40 B4EMY1.1 B4EMY1_BURCJ Putative polymerase 168 1e-39 B1Z117.1 B1Z117_BURA4 Putative uncharacterized protein 167 2e-39 Q0B423.1 Q0B423_BURCM Putative uncharacterized protein 167 2e-39 >B1DJG0.1 B1DJG0_9BACL Putative uncharacterized protein Length = 475 Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 149/404 (36%), Positives = 216/404 (53%), Gaps = 11/404 (2%) Query: 60 YTLLVWAVAPELRRIADWSEGVYHSVSLLSLAPLLTGATLAIPVLKEIHRIRKSSTRIIL 119 Y + VW++ PELRR+ DWS G Y +LS APL + IP++K ++ K+ RI Sbjct: 71 YLIAVWSIYPELRRLLDWSFGAYSETPILSTAPLFVSLVMLIPIVKNFRKLSKTVLRIET 130 Query: 120 LFSVALAYGALIGLAK-NGIGSVYDLANYIVPLLLIPFFAVTRFKPKDIDRLLYAFANIA 178 + L YG LIG+ + GI + +DL NY PLL+I + ++ F+ D LL F+ IA Sbjct: 131 IALSVLLYGFLIGIIQFGGIAASFDLINYATPLLIIAYVNISPFQSHTRDLLLKGFSYIA 190 Query: 179 VLVAIYGIVQYLTVPPWDAFWMKNADMMSIGTPYPLEIRVFSTLNSPGPAATFLVFALVP 238 VLVA+YGI QY +PPWD FWM +++M+SIG P PL++RVFSTLNSPGPA F FAL Sbjct: 191 VLVALYGIYQYFLIPPWDKFWMIHSEMLSIGKPEPLKVRVFSTLNSPGPAGVFFGFALAV 250 Query: 239 MILEKRWQGTLRWIGVMXXXXXXXXXXXRSAWLVMLVMLLVYIASSPSKGKWKXXXXXXX 298 M + K+W+ L IG++ RS+W+ + M+LVY + S K+K Sbjct: 251 MTMNKKWRA-LGLIGMVIVAFGFLLTLVRSSWIALAAMILVYFLQAKSTHKFKLIAILVV 309 Query: 299 XXXXXXWIVPKLPGAEGLVARMETLTSVQEDHSYNERLSLWQNMLPMVAANPIGQGIGSV 358 +I+P LPGAE + R +T ++ +D SYN+RL+ +L ++ NP+G G+GS Sbjct: 310 LFLCYQFILPGLPGAETITNRFDTFGNLNKDVSYNDRLAFSTFILDSISVNPMGNGLGST 369 Query: 359 GQGTKIGNGGELGEYGNMDNGVIXXXXXXXXXXXXXXXXXXXXVIKQIVVRVTSKDSLQP 418 G K+ DNG + + I+ K S Q Sbjct: 370 GLSAKLNENAM----QVFDNGFL--NIFYTFGLPGGLTFLGFLIYLSILALKRDKKSSQ- 422 Query: 419 YARLSLAAWMGAVISLVSDNGFPGLKGYLVWMLIGLGL--GAKE 460 Y L+ A+ GA + L+S+N PG G +W L+ + G KE Sbjct: 423 YYHLAFASMAGAAVLLMSNNFLPGSGGACLWFLVSMIFLRGEKE 466 >Q393I6.1 Q393I6_BURS3 Putative uncharacterized protein Length = 488 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 171/321 (53%), Gaps = 6/321 (1%) Query: 64 VWAVAPELRRIADWSEGVYHSVSLLSLAPLLTGATLAIPVLKEIHRIRKSSTRIILLFSV 123 VW ++PE+RR+ADWS+G + SL+ +APL + +++ + + ILL Sbjct: 75 VWFLSPEVRRLADWSKGAFTPTSLIQVAPLAVTMIAGLGLIRHYRVLAQRRGIPILLMLF 134 Query: 124 ALAYGALIGLAKNGI-GSVYDLANYIVPLLL-IPFFAVTRFKPKDIDRLLYAFANIAVLV 181 LAY L+G+ +G+ + YDLAN++ P+L+ R P+ D LL F +++ Sbjct: 135 GLAYAYLVGIVSSGVMAATYDLANWVYPVLIGFHIMVNARDYPEYRDVLLSTFMWGMLVM 194 Query: 182 AIYGIVQYLTVPPWDAFWMKNADMMSIGTPYPLEIRVFSTLNSPGPAATFLVFALVPMIL 241 +YG+VQY +P WD WM +DM S G P P +RVFST+NS GP A ++ ALV ++ Sbjct: 195 GVYGVVQYFVMPQWDVLWMIGSDMGSQGEPVPYGVRVFSTMNSSGPFAFAMMGALVFVLA 254 Query: 242 EKRWQGTLRWIGVMXXXXXXXXXXXRSAWLVMLVMLLVYIASSPSKGKWKXXXXXXXXXX 301 + +RW RS W ++ L + +A S ++ + + Sbjct: 255 APQ---KIRWFAGAAGFVSFALCLVRSTWGGWVIALAIQLAQSNNRVRMRILISGVVLVG 311 Query: 302 XXXWIVPKLPGAEGLVARMETLTSVQEDHSYNERLSLWQNMLPMVAANPIGQGIGSVGQG 361 ++ P A+ L AR++++T++++D SY++R + + G+G+G+ G Sbjct: 312 LCVPLLTVGPVADRLGARLQSITNLKDDRSYDDRNKFYATFAQTAFTDVAGEGMGATGAS 371 Query: 362 TKI-GNGGELGEYGNMDNGVI 381 TK+ + GELG+YG+ D+GV+ Sbjct: 372 TKLSSDSGELGKYGSFDSGVM 392 >B4EMY1.1 B4EMY1_BURCJ Putative polymerase Length = 488 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 100/321 (31%), Positives = 169/321 (52%), Gaps = 6/321 (1%) Query: 64 VWAVAPELRRIADWSEGVYHSVSLLSLAPLLTGATLAIPVLKEIHRIRKSSTRIILLFSV 123 VW ++PE+RR+ADWS+G + SL+ +APL + +L+ + + +LL Sbjct: 75 VWFLSPEVRRLADWSKGAFTPTSLIQVAPLAVTMIAGLGLLRHYRVLAQRRGIPVLLMLF 134 Query: 124 ALAYGALIGLAKNGI-GSVYDLANYIVPLLL-IPFFAVTRFKPKDIDRLLYAFANIAVLV 181 LAY L+G+ +G+ + YDLAN++ P+L+ R P+ D LL F +++ Sbjct: 135 GLAYAYLVGIVSSGVMAATYDLANWVYPVLIGFHIMVNARDYPEYRDVLLSTFMWGMLVM 194 Query: 182 AIYGIVQYLTVPPWDAFWMKNADMMSIGTPYPLEIRVFSTLNSPGPAATFLVFALVPMIL 241 +YGIVQY +P WD WM +DM S G P P +RVFST+NS GP A ++ ALV + Sbjct: 195 GLYGIVQYFVMPQWDVLWMIGSDMGSQGEPVPYGVRVFSTMNSSGPFAFAIMGALVFVFA 254 Query: 242 EKRWQGTLRWIGVMXXXXXXXXXXXRSAWLVMLVMLLVYIASSPSKGKWKXXXXXXXXXX 301 + +RW RS W ++ L + + S ++ + + Sbjct: 255 APQ---KIRWFAGAAGFVSFALCLVRSTWGGWVIALAIQLVQSSNRVRMRILISGVVLVG 311 Query: 302 XXXWIVPKLPGAEGLVARMETLTSVQEDHSYNERLSLWQNMLPMVAANPIGQGIGSVGQG 361 ++ P A+ L AR++++T++++D SY++R + + G+G+G+ G Sbjct: 312 LCVPLLTVGPVADRLGARLQSITNLKDDRSYDDRNKFYATFAQTAFTDVAGEGMGATGAS 371 Query: 362 TKI-GNGGELGEYGNMDNGVI 381 TK+ + GELG+YG+ D+GV+ Sbjct: 372 TKLSSDSGELGKYGSFDSGVM 392 >B1Z117.1 B1Z117_BURA4 Putative uncharacterized protein Length = 488 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/321 (30%), Positives = 170/321 (52%), Gaps = 6/321 (1%) Query: 64 VWAVAPELRRIADWSEGVYHSVSLLSLAPLLTGATLAIPVLKEIHRIRKSSTRIILLFSV 123 VW ++PE+RR+ADWS+G + SL+ +APL A +++ + + +LL Sbjct: 75 VWFLSPEVRRLADWSKGAFTPTSLIQVAPLAVTMIAAFGLIRHYRVLAQRRGIPVLLMLF 134 Query: 124 ALAYGALIGLAKNGI-GSVYDLANYIVPLLL-IPFFAVTRFKPKDIDRLLYAFANIAVLV 181 LAY L+G+ +G+ + YDLAN++ P+L+ +R P+ D LL F A ++ Sbjct: 135 GLAYAYLVGIVSSGVMAATYDLANWVYPVLIGFHIMVNSRDYPEYRDVLLSTFMWGAAVM 194 Query: 182 AIYGIVQYLTVPPWDAFWMKNADMMSIGTPYPLEIRVFSTLNSPGPAATFLVFALVPMIL 241 +YG+VQY +P WD WM ++M S G P P +RVFST+NS GP A ++ ALV + Sbjct: 195 GVYGVVQYFVMPQWDVLWMIGSNMGSQGEPVPYGVRVFSTMNSSGPFAFAIMGALVFVFA 254 Query: 242 EKRWQGTLRWIGVMXXXXXXXXXXXRSAWLVMLVMLLVYIASSPSKGKWKXXXXXXXXXX 301 + +RW RS W ++ L + + S ++ + + Sbjct: 255 APQ---KVRWFAGAAGFVSFALCLVRSTWGGWVIALAIQLLQSSNRVRMRILISGVVLVG 311 Query: 302 XXXWIVPKLPGAEGLVARMETLTSVQEDHSYNERLSLWQNMLPMVAANPIGQGIGSVGQG 361 ++ P A+ L AR++++T++++D SY++R + + G+G+G+ G Sbjct: 312 LCVPLLTVGPVADRLGARLQSITNLKDDRSYDDRNKFYATFAQTAFTDVAGEGMGATGAS 371 Query: 362 TKI-GNGGELGEYGNMDNGVI 381 TK+ + GELG+YG+ D+GV+ Sbjct: 372 TKLSSDSGELGKYGSFDSGVM 392 >Q0B423.1 Q0B423_BURCM Putative uncharacterized protein Length = 488 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 99/321 (30%), Positives = 170/321 (52%), Gaps = 6/321 (1%) Query: 64 VWAVAPELRRIADWSEGVYHSVSLLSLAPLLTGATLAIPVLKEIHRIRKSSTRIILLFSV 123 VW ++PE+RR+ADWS+G + SL+ +APL A +++ + + +LL Sbjct: 75 VWFLSPEVRRLADWSKGAFTPTSLIQVAPLAVTMIAAFGLIRHYRVLAQRRGIPVLLMLF 134 Query: 124 ALAYGALIGLAKNGI-GSVYDLANYIVPLLL-IPFFAVTRFKPKDIDRLLYAFANIAVLV 181 LAY L+G+ +G+ + YDLAN++ P+L+ +R P+ D LL F A ++ Sbjct: 135 GLAYAYLVGIVSSGVMAATYDLANWVYPVLIGFHIMVNSRDYPEYRDVLLSTFMWGAAVM 194 Query: 182 AIYGIVQYLTVPPWDAFWMKNADMMSIGTPYPLEIRVFSTLNSPGPAATFLVFALVPMIL 241 +YG+VQY +P WD WM ++M S G P P +RVFST+NS GP A ++ ALV + Sbjct: 195 GVYGVVQYFVMPQWDVLWMIGSNMGSQGEPVPYGVRVFSTMNSSGPFAFAIMGALVFVFA 254 Query: 242 EKRWQGTLRWIGVMXXXXXXXXXXXRSAWLVMLVMLLVYIASSPSKGKWKXXXXXXXXXX 301 + +RW RS W ++ L + + S ++ + + Sbjct: 255 APQ---KVRWFAGAAGFVSFALCLVRSTWGGWVIALAIQLLQSSNRVRMRILISGVVLVG 311 Query: 302 XXXWIVPKLPGAEGLVARMETLTSVQEDHSYNERLSLWQNMLPMVAANPIGQGIGSVGQG 361 ++ P A+ L AR++++T++++D SY++R + + G+G+G+ G Sbjct: 312 LCVPLLTVGPVADRLGARLQSITNLKDDRSYDDRNKFYATFAQTAFTDVAGEGMGATGAS 371 Query: 362 TKI-GNGGELGEYGNMDNGVI 381 TK+ + GELG+YG+ D+GV+ Sbjct: 372 TKLSSDSGELGKYGSFDSGVM 392 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,339,891,107 Number of extensions: 89437291 Number of successful extensions: 219189 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 219024 Number of HSP's successfully gapped: 49 Length of query: 481 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 341 Effective length of database: 1,741,754,103 Effective search space: 593938149123 Effective search space used: 593938149123 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)