BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0038.p (430 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJG2.1 B1DJG2_9BACL Polysaccharide biosynthesis protein 304 1e-80 B2IF72.1 B2IF72_BEII9 Polysaccharide biosynthesis protein 171 1e-40 Q6LNR4.1 Q6LNR4_PHOPR Putative uncharacterized protein 74 3e-11 A1RC23.1 A1RC23_ARTAT Putative integral membrane protein 72 1e-10 Q13NU6.1 Q13NU6_BURXL Putative uncharacterized protein 67 3e-09 >B1DJG2.1 B1DJG2_9BACL Polysaccharide biosynthesis protein Length = 449 Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 157/424 (37%), Positives = 243/424 (57%) Query: 7 SVLILLVNMLTGVLTARYLGPTGRGEQTAMVNWSQFLAFSMSFGIPSALIYNAKKNPDEA 66 +V IL++NMLTG++ ARYLGP GRGEQ AM+ W Q L++ ++ G+PS+++Y K+ + Sbjct: 23 NVFILVLNMLTGIIVARYLGPEGRGEQAAMIMWPQLLSYIVTLGLPSSIVYYMKQKGSKQ 82 Query: 67 GVLYRMALLIALAFGTLAMIVGIVVLPYWLNSFSPNVVLFAQCSMILCPLIVVSQINNAA 126 G LY +L + G +MI G+ LP W+ +SP V FA ++IL P ++ INNA Sbjct: 83 GSLYVASLWMCFTLGIFSMIGGLFFLPEWMKGYSPGKVEFACWALILIPFSLLGVINNAV 142 Query: 127 FQFRGDYKTFNWXXXXXXXXXXXXXXXXXXXXSINPFTTALAYLVPSVPVFIWMTITLLR 186 Q R +Y+ FN +N F +++AYL P++P+ +W I LLR Sbjct: 143 LQAREEYQLFNRIRYLPNIITLVLLGFMVISGHVNSFYSSVAYLAPTLPITLWTMIRLLR 202 Query: 187 TYRVKMKDAYLNFKRLFTYGLGSYGNDLLGQFSYYIDQIVIAGLLRPADLGLYAVAVSLS 246 Y +K KD + K+L YG+ SYG DL G S+YIDQ+++ GLL PA LG+Y VA+SL+ Sbjct: 203 IYSIKQKDIIDSSKQLVQYGIRSYGTDLAGTLSFYIDQVLVVGLLSPASLGIYLVALSLA 262 Query: 247 RMVNFFSNSITVVLFPKASELSKDQAIALTFKAFRISTTCTLLGSLFLMLVAPFVIPLLY 306 +M++ +S+ VLFP+AS L +++AI LT K +RIST TL+ ++L+AP+ + +LY Sbjct: 263 KMLDVIQSSVVSVLFPQASGLQREEAIRLTLKVYRISTVITLVFVAVVILLAPYALLILY 322 Query: 307 GKDFNTALTVFRLLLLEVTISGGTLILAQVFMALGKPKFVSXXXXXXXXXXXXXXXXXXX 366 G + A+ VFR+L+L ++ T LAQ +MA KP + Sbjct: 323 GHSYEGAIPVFRVLVLSTAVASATWTLAQGYMATDKPGRATLLKVLSLFMNALFINIFTP 382 Query: 367 KFGLFGAGVAMLSSAVLRFLFIILNIRYNLKVKLPRLLINGEDIQWLKTTMNSYIRKKPM 426 G+ GA ++L SA + FL I+ Y +K+K + ED W+K + + R+ Sbjct: 383 HMGIIGAAYSLLLSAFINFLLILFLYSYEMKLKWSSFFYDKEDWIWMKEMLRNKGRRHKE 442 Query: 427 DTSS 430 + + Sbjct: 443 SSEA 446 >B2IF72.1 B2IF72_BEII9 Polysaccharide biosynthesis protein Length = 466 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 118/407 (28%), Positives = 196/407 (48%), Gaps = 6/407 (1%) Query: 8 VLILLVNMLTGVLTARYLGPTGRGEQTAMVNWSQFLAFSMSFGIPSALIYNAKKNPDEAG 67 V+ L+ N+ TG++TA LGP GRG Q A++ + L+ SFG+ +AL+YN K +P Sbjct: 58 VVSLVTNLGTGMITAWSLGPAGRGTQAAILLGALTLSGICSFGLHTALVYNMKSDPPNKS 117 Query: 68 VLYRMALLIALAFGTLAMIVGIVVLPYWLNSFSPNVVLFAQCSMILCPLIVVSQINNAAF 127 + ALLI L + + +G LP+ L+ F + +L + + P+ V+S + N Sbjct: 118 YYFGSALLIGLIVSLIGVTIGWFALPWILDKFDEHTLLAGRLLTFVVPVSVISYVLNGVL 177 Query: 128 QFRGDYKTFNWXXXXXXXXXXXXXXXXXXXXSINPFTTALAYLVPSVPV---FIWMTITL 184 ++ + + P T A++YL+P+VP+ W ++ Sbjct: 178 DGHHEFNFVSRLGLLNNFFILCSLSLLWLSGLLTPATAAMSYLLPTVPITAMLAWRATSI 237 Query: 185 LRTYRVKMKDAYLNFKRLFTYGLGSYGNDLLGQFSYYIDQIVIAGLLRPADLGLYAVAVS 244 LR A L KR+FTY + +G DL+ S Y+DQ ++ L DLGLY+VA + Sbjct: 238 LRP-ATPFHGACL--KRMFTYSVRFFGVDLICTVSGYLDQFLMVLFLNAQDLGLYSVATT 294 Query: 245 LSRMVNFFSNSITVVLFPKASELSKDQAIALTFKAFRISTTCTLLGSLFLMLVAPFVIPL 304 R++ SI V FP + SKD + R+++ T ++FL + AP+ + L Sbjct: 295 AERVLGIIPASILTVTFPSVAGRSKDDIREIVGITARLTSIVTTSAAVFLGIFAPYFLLL 354 Query: 305 LYGKDFNTALTVFRLLLLEVTISGGTLILAQVFMALGKPKFVSXXXXXXXXXXXXXXXXX 364 LYG F A+ FR+LLL +S Q++ G+P+ V+ Sbjct: 355 LYGPKFAEAIVPFRILLLSALVSNAVGTFYQMYSGSGRPEIVTVFEAIGFVIAATSMVIL 414 Query: 365 XXKFGLFGAGVAMLSSAVLRFLFIILNIRYNLKVKLPRLLINGEDIQ 411 +G+ G +A + SA R + ++ + L + +PRL+IN DI+ Sbjct: 415 IPFYGINGVAIAAVLSAAGRLILVLGGLPAVLHLSIPRLIINWADIK 461 >Q6LNR4.1 Q6LNR4_PHOPR Putative uncharacterized protein Length = 443 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 96/427 (22%), Positives = 185/427 (43%), Gaps = 31/427 (7%) Query: 1 VKTMFVSVLILLVNMLTGVLTARYLGPTGRGEQTAMVNWSQFLAFSMSFGIPSALIY--N 58 +KT ++ +V ++ ++ +R GP G G T + L ++ GI ++ +Y Sbjct: 13 IKTAGRQIITGIVQLIIIMIISRTYGPAGSGSYTIITLLPITLTNLLNMGITASNVYFIG 72 Query: 59 AKKNPDEAGV--LYRMALLIALAFGTLAMIVGIVVLPYWLNSFSPNV-VLFAQCSMILCP 115 +KK E + LY+ IA A + +++G +++ + ++ PNV V ++I+ P Sbjct: 73 SKKYKVEIVISNLYK----IACALSIIGLLIGFLLITFASDNLFPNVDVWLLYIALIVFP 128 Query: 116 LIVVSQINNAAFQFRGDYKTFNWXXXXXXXXXXXXXXXXXXXXSINPFTTALAYLVPSVP 175 L +++ N+ FQ ++K FN I+ + Sbjct: 129 LTLLNSFFNSIFQAIQNFKIFNIILIIQPLSMLLLVSFLTL---IDENEIIYLISSLIIS 185 Query: 176 VFIWMTITLLRTYRVK------MKDAYLNFKRLFTYGLGSYGNDLLGQFSYYIDQIVIAG 229 + + ++ ++K +D Y+ K YG+ ++ ++++ + D + Sbjct: 186 SLLSLCVSFFHILQIKNDEKEITRDGYI--KDSLKYGIKAHLSNIVAFLNNKADIYFVNM 243 Query: 230 LLRPADLGLYAVAVSLSRMVNFFSNSITVVLFPKASELSKDQ------AIALTFKAFRIS 283 LL P +G Y ++V LS + S +++ VL PK SELS ++ +AL+ F I Sbjct: 244 LLNPTSVGFYIISVQLSEKIWIVSQALSTVLLPKLSELSDEENTKKEIVLALSKIVFYI- 302 Query: 284 TTCTLLGSLFLMLVAPFVIPLLYGKDFNTALTVFRLLLLEVTISGGTLILAQVFMALGKP 343 T+ S F+ +++ VI LL+G++F+ A+ LL V +LA + G+P Sbjct: 303 ---TIFLSTFVAIISKPVIILLFGEEFSPAIEPLLYLLPGVVFMTVARVLANDLASRGRP 359 Query: 344 KFVSXXXXXXXXXXXXXXXXXXXKFGLFGAGVAMLSSAVLRFLFIILNIRYNLKVKLPRL 403 + +G+ GA ++ + VL + L RY KVK+ L Sbjct: 360 ELNMYTSIIIVIVNIIGNIILIPLYGISGAAISTSIAYVLNCILRCLMYRYYTKVKISDL 419 Query: 404 -LINGED 409 +IN D Sbjct: 420 FIINRSD 426 >A1RC23.1 A1RC23_ARTAT Putative integral membrane protein Length = 450 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 3/248 (1%) Query: 180 MTITLLRTYRVKMKDAYLNFKRLFTYGLGSYGNDLLGQFSYYIDQIVIAGLLRPADLGLY 239 +T+ L YR ++A RLF+YG + L G +DQ+++ L PA LGLY Sbjct: 197 LTVPYLIEYRRGYRNATAKRVRLFSYGSRLWVGSLAGVVLLRLDQLLMIPLAGPAQLGLY 256 Query: 240 AVAVSLSRMVNFFSNSITVVLFPKASELSKDQAIALTF-KAFRISTTCTLLGSLFLMLVA 298 AVAVSL + + ++ V+F + S+D+ + R+++ L S+ + ++ Sbjct: 257 AVAVSLGEVPAVLAGAVRNVVFSSDAGSSQDREHTDRLQQTARLTSAAAGLASIGIGVLL 316 Query: 299 PFVIPLLYGKDFNTALTVFRLLLLEVTISGGTLILAQVFMALGKPKFVSXXXXXXXXXXX 358 P+ IP+L+G F A+ V ++L VT+ + A G+P S Sbjct: 317 PWAIPVLFGASFGAAVAVTWVILAGVTLGTAGSVAGAGLSARGRPGLRSWGMVIGAIANT 376 Query: 359 XXXXXXXXKFGLFGAGVAMLSSAVLRFLFIILNIRYNLKVKLPRLL-INGEDIQW-LKTT 416 G GA ++ L V+ ++ +R + + + + DIQ LKT Sbjct: 377 AVLLMAVPTLGAMGAALSTLVGNVVAGTMNVVWLRAHFGMGIRGFYGLRSRDIQLVLKTL 436 Query: 417 MNSYIRKK 424 + +KK Sbjct: 437 VRQTGKKK 444 >Q13NU6.1 Q13NU6_BURXL Putative uncharacterized protein Length = 430 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 80/381 (20%), Positives = 159/381 (41%), Gaps = 6/381 (1%) Query: 7 SVLILLVNMLTGVLTARYLGPTGRGEQTAMVNWSQFLAFSMSFGIPSALIYNAKKNPDEA 66 +V IL +N LT+ + G RG TA++ + LA FG+ +Y ++ P+ A Sbjct: 16 NVAILGLNFGNVALTSLFAGLNTRGAVTAIMAYPPLLASICCFGLHLGFVYLTQRFPERA 75 Query: 67 GVLYRMALLIALAFGTLAMIVGIVVLPYWLNSFSPNVVLFAQCSMILCPLIVVSQINNAA 126 L++ ++ A+ +V + + PY S + L +++L +V + + A Sbjct: 76 ESLFKCLIVCAVFSIGAGTLVSLTIAPYIAGKISADRTLVTIWTIVLTDTTIVYALFSGA 135 Query: 127 FQFRGDYKTFNWXXXXXXXXXXXXXXXXXXXXSINPFTTALAYLVPSVPVFIWMTITLLR 186 Q + F+ + AY S+ + + +R Sbjct: 136 CQTEKLFHVFSVSRLMSPAVTAVGILVFGLFSVVETQAYLAAYAAGSLVSSAFTIVVCIR 195 Query: 187 TYRVKMKDAYLNFKRLFTYGLGSYGNDLLGQFSYYIDQIVIAGLLRP-ADLGLYAVAVSL 245 Y+ K A + + L + D++ + +D+I + L P ++G+Y + ++ Sbjct: 196 EYKNKGVLARKDVRELGRLASLYWIGDVMNILVWQVDKIALIALSMPMREVGIYTIVAAV 255 Query: 246 SRMVNFFSNSITVVLFPKASELSKDQAIALTFKAFRISTTCTLL--GSLFLMLVAPFVIP 303 +R V S++ VL KA S+ + T FR T ++L G L ++++ F I Sbjct: 256 ARGVGQIPISLSQVLLAKAIGKSRSAVVEQTAVNFRYITVLSVLMAGCLAPVMLSSFFIT 315 Query: 304 LLYGKDFNTALTVFRLLLLEVTISGGTLILAQVFMALGKPKFVSXXXXXXXXXXXXXXXX 363 + F + V +L ++ ++GG+LI++Q F A+G+P + Sbjct: 316 NVEISRF---VKVLCILSIDSCVAGGSLIVSQAFSAVGEPHKGAIRQLVGGLSAIVFAYF 372 Query: 364 XXXKFGLFGAGVAMLSSAVLR 384 + G+ G +L S+VL+ Sbjct: 373 LGLQLGVVGVATGILMSSVLK 393 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,129,934,706 Number of extensions: 79449965 Number of successful extensions: 253103 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 253298 Number of HSP's successfully gapped: 40 Length of query: 430 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 291 Effective length of database: 1,751,175,118 Effective search space: 509591959338 Effective search space used: 509591959338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)