BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0020.p (228 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3C0.1 B3K3C0_9BACI Putative uncharacterized protein 218 5e-55 C1YIP2.1 C1YIP2_NOCDA Putative uncharacterized protein 58 7e-07 B1W1B3.1 B1W1B3_STRGG Putative integral membrane protein 57 9e-07 Q47T47.1 Q47T47_THEFY Putative integral membrane protein 57 1e-06 Q083I5.1 Q083I5_SHEFN Putative uncharacterized protein 55 6e-06 >B3K3C0.1 B3K3C0_9BACI Putative uncharacterized protein Length = 220 Score = 218 bits (554), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 119/218 (54%), Positives = 151/218 (69%), Gaps = 1/218 (0%) Query: 1 MNKWLKTLLFLAGSALLTRLIPFSSLFRNLDTMFHEFGHALITLLLSGSVLRIELYADHS 60 MNKWLK LLFLAG+A LTRLIPFSS FR LDTM HE GHA +TLL+SG VL IEL DHS Sbjct: 1 MNKWLKALLFLAGAAFLTRLIPFSSWFRILDTMIHELGHAAMTLLMSGRVLSIELNPDHS 60 Query: 61 GVTYSAIEAGG-KAVLVSLAGYTLAXXXXXXXXXXXNRGRYRWGLLLASGVALVMLVLYV 119 GVTYS + +GG ++VSLAGYT A + + GL+ + +AL+M++ +V Sbjct: 61 GVTYSMLASGGWSPIVVSLAGYTSASLFAILMFYGYAKKKQATGLITITVLALIMIIFFV 120 Query: 120 RGGFGMLWLGGFILLNAVMLFVWPKAGKYYYLFLAFLTLEESVMSSLFLVSAAAVTPGRA 179 R G+G+ WL F+++N + F+ K +YYL LAFL LEESV+ L L++ A P +A Sbjct: 121 RAGYGLWWLIIFMIVNLIFYFLGDKVRNFYYLLLAFLVLEESVVGPLTLLTMALTQPKQA 180 Query: 180 GDAANLARLTPLPAIVWALLFLVFSLLCAKWALGFFFK 217 GDA+NLA +T LPA WALLFL+FSL CAK AL F+K Sbjct: 181 GDASNLANMTVLPAFAWALLFLLFSLWCAKVALQLFWK 218 >C1YIP2.1 C1YIP2_NOCDA Putative uncharacterized protein Length = 231 Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 83/179 (46%), Gaps = 11/179 (6%) Query: 28 RNLDTMFHEFGHALITLLLSGSVLRIELYADHSGVTYSAIEAGGKA-VLVSLAGYTLAXX 86 RN+ T+ HE GHAL+ LL + I L++D SGVT S + G VL AGY + Sbjct: 41 RNVVTIAHEGGHALVALLSGRQLTGIRLHSDTSGVTVSRGKPTGVGMVLTVFAGYVASSV 100 Query: 87 XXXXXXXXXNRGRYRWGLLLASGVALVMLVLYVRGGFGMLWLGGFILLNAVML----FVW 142 R LL S V L ++L +R +G++ ++ AV+ F Sbjct: 101 IGLLGILMLMSDRVT-ALLWLSIVVLAAMLLMIRNVYGVV---SIVVTGAVVFGISWFTP 156 Query: 143 PK-AGKYYYLFLAFLTLEESVMSSLFLVSAAAVTPGRAGDAANLARLTPLPAIVWALLF 200 P+ + YLF+ FL L V + L + P DA LARLT +P +W ++F Sbjct: 157 PEVQAAFAYLFIWFL-LFAGVRPVIELQAQRRRNPSPHSDADQLARLTGVPGTLWVVVF 214 >B1W1B3.1 B1W1B3_STRGG Putative integral membrane protein Length = 237 Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 88/203 (43%), Gaps = 15/203 (7%) Query: 22 PFSSLFRNLDTMFHEFGHALITLLLSGSVLRIELYADHSGVTYSAIEAGGKA-VLVSLAG 80 P L RN T+ HE GH L+ LL + I L++D SG+T S + G +L + AG Sbjct: 40 PLWRLARNTITIAHEGGHGLVALLTGRQLSGIRLHSDTSGLTVSRGKPTGIGMILTAAAG 99 Query: 81 YTLAXXXXXXXXXXXNRGRYRWGLLLASGVALVMLVLYVRGGFGMLWLGGFILLNAVMLF 140 YT GR L +A+ + VMLV+ +R +G L IL L Sbjct: 100 YTAPSLLGLGGAWLLTNGRITLLLWVATALLAVMLVM-IRNVYGAL---TVILTGTTFLL 155 Query: 141 V-WPKAGK----YYYLFLAFLTLEESVMSSLFLVSAAAVTPGRAGDAANLARLTPLPAIV 195 V W + + Y+ + FL L V L S DA LARLT PA++ Sbjct: 156 VSWLASSDVQSAFAYVVVWFLLL-GGVRPPFELQSKRRYGGAPDSDADQLARLTHAPAVL 214 Query: 196 WALLFLVFSLLC----AKWALGF 214 W LF SL +W LG+ Sbjct: 215 WLFLFHAVSLSSLIGGGRWLLGW 237 >Q47T47.1 Q47T47_THEFY Putative integral membrane protein Length = 238 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 62/181 (34%), Positives = 89/181 (49%), Gaps = 5/181 (2%) Query: 28 RNLDTMFHEFGHALITLLLSGSVLRIELYADHSGVTYSAIEAGGKAVLVS-LAGYTLAXX 86 RN+ T+ HE GHAL LL + I L++D SGVT S G ++V+ LAGYT Sbjct: 47 RNVVTIAHEGGHALAALLSGRQLSGIRLHSDTSGVTVSRGRPDGIGMIVTILAGYTAPAV 106 Query: 87 XXXXXXXXXNRGRYRWGLLLASGVALVMLVLYVRGGFGMLWLGGFILLNAVMLFVWPKAG 146 GR GLL S + L ++L +R +G++ + G + + + P A Sbjct: 107 VGLAGIILLTAGRIT-GLLWISILLLAAMLLLIRNVYGVVAVVGTGAVVFAVSWWTPSAV 165 Query: 147 KYY--YLFLAFLTLEESVMSSLFLVSAAAVTPGRAGDAANLARLTPLPAIVWALLFLVFS 204 + + YLF F+ L SV L S P DA LARLT +P +W ++F VF+ Sbjct: 166 QSFFAYLFTWFM-LFASVRPVFELQSQRRRHPSPHSDADQLARLTGVPGTMWVMVFAVFN 224 Query: 205 L 205 L Sbjct: 225 L 225 >Q083I5.1 Q083I5_SHEFN Putative uncharacterized protein Length = 225 Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 24/203 (11%) Query: 16 LLTRLIPFSSLFRNLDTMFHEFGHALITLLLSGSVLRIELYADHSGVTYSAIEAGGKAVL 75 LLTR S F+ ++ FHE H + TLL GSV I+L+ + +G +S GG ++L Sbjct: 24 LLTRFPYISIPFKWFESYFHELSHGIATLLTGGSVSHIQLFPNGAGFCFS---QGGSSIL 80 Query: 76 VSLAGY-TLAXXXXXXXXXXXNRGRYRWGLLLASGVALVMLVLYVRGGFGMLWLGGFILL 134 ++ AGY A + R+ L L + L+ + R ++ IL Sbjct: 81 IAYAGYFGAALWGYSIFLMATQKQTIRFTLTLLALTVAASLLFWARDVLTIV-----ILS 135 Query: 135 NAVMLFVWPKAGKYYYL------FLAFLTLEESVMSSLFLVSAAAVTPGRAGDAANLARL 188 ++LF+ P K L L + + ++ S + L+ + GDA LA + Sbjct: 136 VLIILFLLPLKLKNSSLLNTLLRILGLMIILNAMASPMVLLGLSG-----QGDAVMLAEM 190 Query: 189 TPLPAIVWALLFLVFS----LLC 207 T LPA +W + +L FS LLC Sbjct: 191 TWLPAWIWVITWLAFSGFMLLLC 213 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,245,920,375 Number of extensions: 45220840 Number of successful extensions: 189939 Number of sequences better than 1.0e-05: 60 Number of HSP's gapped: 189905 Number of HSP's successfully gapped: 60 Length of query: 228 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 97 Effective length of database: 1,826,543,238 Effective search space: 177174694086 Effective search space used: 177174694086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)