BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0017.p (329 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZB25.1 C0ZB25_BREBN ABC transporter ATP-binding protein 465 e-129 A6CLS6.1 A6CLS6_9BACI Oligopeptide ABC transporter (ATP-binding ... 440 e-122 Q5WIM9.1 Q5WIM9_BACSK Oligopeptide ABC transporter ATP-binding p... 436 e-120 Q9K6T0.1 Q9K6T0_BACHD Oligopeptide ABC transporter (ATP-binding ... 435 e-120 B7GIJ3.1 B7GIJ3_ANOFW ABC-type dipeptide/oligopeptide/nickel tra... 432 e-119 >C0ZB25.1 C0ZB25_BREBN ABC transporter ATP-binding protein Length = 322 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 213/318 (66%), Positives = 264/318 (83%) Query: 3 QPILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNP 62 P+L++E L THFFT+ G++PAVDGV + + GEV+G+VGESGCGKSVTSLS++KLVPNP Sbjct: 3 HPVLQIENLQTHFFTDRGQIPAVDGVTITVQKGEVVGIVGESGCGKSVTSLSVMKLVPNP 62 Query: 63 PGKIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLH 122 PG+IV G I KG+D+V + EK MR+IRG+ ++MIFQEPMTSLNP+FT+G QI E+VRLH Sbjct: 63 PGRIVGGSIKFKGEDLVSVDEKRMRDIRGNEIAMIFQEPMTSLNPVFTIGDQIGESVRLH 122 Query: 123 RSLSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADE 182 SKKDAR A++ML+KVGIPR +AI+DEYPHQLSGGMRQRVMIAM+++C+P LLIADE Sbjct: 123 TKASKKDARARAIEMLKKVGIPRADAIVDEYPHQLSGGMRQRVMIAMAMACNPALLIADE 182 Query: 183 PTTALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVR 242 PTTALDVTIQAQILDL+R+LN E T+++LITHDLGVVAEMC RV VMYAG V+E+G VR Sbjct: 183 PTTALDVTIQAQILDLMRQLNREADTSILLITHDLGVVAEMCHRVVVMYAGNVIEQGDVR 242 Query: 243 DIFKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQ 302 I KNP HPYT GL+ S+P++ ++ERLYSIPG+VPI + GCRFAPRC V + CR Sbjct: 243 TILKNPKHPYTIGLLNSLPKLEGSQERLYSIPGNVPIPGSLTVGCRFAPRCDKVSDRCRS 302 Query: 303 SLPQLKLQEDNHSCRCWL 320 +P+LK+ DNH RCWL Sbjct: 303 EMPELKVVGDNHLSRCWL 320 >A6CLS6.1 A6CLS6_9BACI Oligopeptide ABC transporter (ATP-binding protein) Length = 338 Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust. Identities = 203/325 (62%), Positives = 260/325 (80%) Query: 4 PILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNPP 63 PILKVEEL T FFT+ GEVPAVD V+ ++N GE+LG+VGESGCGKSVTSLSI+ LVP+PP Sbjct: 6 PILKVEELQTTFFTDDGEVPAVDNVNFHVNEGEILGIVGESGCGKSVTSLSIMGLVPSPP 65 Query: 64 GKIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLHR 123 GK+ G+IL K +D+ EK MR IRG+ ++MIFQEPMTSLNP+FT+G Q+ E +R+H+ Sbjct: 66 GKVTGGKILFKDEDLTKASEKRMREIRGNDIAMIFQEPMTSLNPVFTIGNQLTEAIRIHK 125 Query: 124 SLSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADEP 183 SK +AR AV +++ VG+PR E +++EYPHQLSGGMRQRVMIAM+++C P++LIADEP Sbjct: 126 KNSKAEARKDAVRIMQLVGLPRAEELLNEYPHQLSGGMRQRVMIAMAMACDPKVLIADEP 185 Query: 184 TTALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVRD 243 TTALDVTIQAQIL L+++LN+E TAV+LITHDLGVVAE C+R+ VMY+GKVVEEG+V + Sbjct: 186 TTALDVTIQAQILKLMKQLNKEMNTAVILITHDLGVVAETCERLIVMYSGKVVEEGTVEE 245 Query: 244 IFKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQS 303 IFKNP HPYT+GLIQSVP M +++LYSIPGSVP + GCRFA RC + + C Sbjct: 246 IFKNPQHPYTKGLIQSVPDMRFKKQKLYSIPGSVPKPGSIKHGCRFAARCEYAFDRCLSE 305 Query: 304 LPQLKLQEDNHSCRCWLHDSQQEDA 328 P+L H+ RC+L+DS++E A Sbjct: 306 TPELYETAPGHTSRCFLYDSKEERA 330 >Q5WIM9.1 Q5WIM9_BACSK Oligopeptide ABC transporter ATP-binding protein Length = 329 Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust. Identities = 205/326 (62%), Positives = 255/326 (78%) Query: 3 QPILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNP 62 Q +L+++ L T F + VPAVDGV L++ GEVLG+VGESGCGKSVTSLSI++L+P+P Sbjct: 3 QVVLELKNLQTTFQSGKTAVPAVDGVSLHVRKGEVLGIVGESGCGKSVTSLSIMQLIPSP 62 Query: 63 PGKIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLH 122 PGKI G IL KG+DI K K M+ +RG +SMIFQEPMTSLNPLFT+G Q+IE +R H Sbjct: 63 PGKIAGGEILYKGEDIAKAKAKRMKRLRGKEISMIFQEPMTSLNPLFTIGNQLIEAIRNH 122 Query: 123 RSLSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADE 182 +SKK+AR A+ ++R VGIPR E II EYPHQLSGGMRQR+MIAM++SC PE+LIADE Sbjct: 123 NKISKKEARAKAIQLVRDVGIPRAEEIIHEYPHQLSGGMRQRIMIAMAMSCDPEVLIADE 182 Query: 183 PTTALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVR 242 PTTALDVTIQAQILDL++ LNE++G A++LITHDLGVVA++C RV VMYAG+VVEEG+VR Sbjct: 183 PTTALDVTIQAQILDLMKSLNEQKGMAILLITHDLGVVADICHRVVVMYAGQVVEEGTVR 242 Query: 243 DIFKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQ 302 I K P HPYT+GLI+S+P++ E +++LYSIPG+VP QGCRFA RC E C Q Sbjct: 243 TILKQPKHPYTQGLIRSLPKLTERKQQLYSIPGTVPQPGAIEQGCRFAERCEFAFEACFQ 302 Query: 303 SLPQLKLQEDNHSCRCWLHDSQQEDA 328 P L ED H+CRC L++ EDA Sbjct: 303 KNPALLELEDGHACRCLLYEGGNEDA 328 >Q9K6T0.1 Q9K6T0_BACHD Oligopeptide ABC transporter (ATP-binding protein) Length = 329 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 202/323 (62%), Positives = 259/323 (80%) Query: 5 ILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNPPG 64 +L++++L THFFT+ GEVPAVDGV L ++ GE++G+VGESGCGKSVTSLSI++LVPNPPG Sbjct: 5 VLELDKLRTHFFTDQGEVPAVDGVSLRLHQGEIIGIVGESGCGKSVTSLSIMQLVPNPPG 64 Query: 65 KIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLHRS 124 KI+SG + KG+D+V + K M+ IRG+ ++MIFQEPMTSLNPLFT+G Q+IE +R HR Sbjct: 65 KIMSGHVYFKGEDLVQVSPKRMKQIRGNDIAMIFQEPMTSLNPLFTIGNQLIEAIRNHRK 124 Query: 125 LSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADEPT 184 ++K++AR AV ML +VGIPR + I EYPHQLSGGMRQRVMIAM++ C P++LIADEPT Sbjct: 125 MTKQEARKQAVTMLERVGIPRADEIASEYPHQLSGGMRQRVMIAMAMCCDPKVLIADEPT 184 Query: 185 TALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVRDI 244 TALDVTIQAQILDL+R LNE TA++LITHDLGVVAE+C RV VMYAG+VVEEG VR I Sbjct: 185 TALDVTIQAQILDLMRHLNEAHDTAILLITHDLGVVAELCNRVVVMYAGQVVEEGDVRMI 244 Query: 245 FKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQSL 304 K+P HPYT+GL++S+P++ E +RLYSIPG VP T GCRFA RC E C+ + Sbjct: 245 LKHPKHPYTKGLLKSLPKIHEQSKRLYSIPGVVPKPGTVGHGCRFAARCEVAFERCKTTA 304 Query: 305 PQLKLQEDNHSCRCWLHDSQQED 327 PQL+ H CRC+L++ + ++ Sbjct: 305 PQLQQVATGHQCRCFLYEERGDE 327 >B7GIJ3.1 B7GIJ3_ANOFW ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component Length = 359 Score = 432 bits (1111), Expect = e-119, Method: Compositional matrix adjust. Identities = 206/327 (62%), Positives = 256/327 (78%), Gaps = 1/327 (0%) Query: 3 QPILKVEELHTHFFTEHGEVPAVDGVDLYINPGEVLGVVGESGCGKSVTSLSILKLVPNP 62 + IL+V+ L T FFT+ GEVPAVDGVD YIN GE+LG+VGESGCGKSVTSLSI+ L+P Sbjct: 26 EAILRVKSLKTCFFTDEGEVPAVDGVDFYINKGEILGIVGESGCGKSVTSLSIMGLLPKG 85 Query: 63 PGKIVSGRILLKGQDIVPLKEKEMRNIRGDAVSMIFQEPMTSLNPLFTVGQQIIETVRLH 122 GKI G I K ++I EK M+ IRG+ ++MIFQEPMTSLNPLFT+G Q+IE +R+H Sbjct: 86 IGKITDGEIWFKDENIALASEKRMKEIRGNEIAMIFQEPMTSLNPLFTIGNQMIEAIRIH 145 Query: 123 RSLSKKDARTHAVDMLRKVGIPRPEAIIDEYPHQLSGGMRQRVMIAMSVSCSPELLIADE 182 +++SK +AR A+DML+ VG+PR E +IDEYPHQLSGGMRQRVMIAM++ C+P LLIADE Sbjct: 146 QNISKAEARKRAIDMLKLVGLPRAEEMIDEYPHQLSGGMRQRVMIAMAMVCNPSLLIADE 205 Query: 183 PTTALDVTIQAQILDLIRKLNEEQGTAVMLITHDLGVVAEMCQRVAVMYAGKVVEEGSVR 242 PTTALDVTIQAQIL L+++LNE+ GTA+M+ITHDLGVVAEMC RV VMYAGK++EEG V+ Sbjct: 206 PTTALDVTIQAQILHLMKQLNEQFGTAIMMITHDLGVVAEMCHRVVVMYAGKIIEEGDVQ 265 Query: 243 DIFKNPLHPYTRGLIQSVPRMGETRERLYSIPGSVPILSTQLQGCRFAPRCSHVMEICRQ 302 IF++P HPYT GLI+SVP + E +ERLYSIPGSVP + GCRFA RC E C Sbjct: 266 TIFRHPKHPYTIGLIRSVPDIRERKERLYSIPGSVPKPGSIKYGCRFAARCEQAFERCFS 325 Query: 303 SLPQLKLQEDNHSCRCWLHDSQQEDAV 329 P L E H RC+L+ +++E A+ Sbjct: 326 ENPDLYEVEQGHRARCFLY-AKEEHAI 351 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,968,365,691 Number of extensions: 81235969 Number of successful extensions: 478905 Number of sequences better than 1.0e-05: 83906 Number of HSP's gapped: 378694 Number of HSP's successfully gapped: 90251 Length of query: 329 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 193 Effective length of database: 1,779,438,163 Effective search space: 343431565459 Effective search space used: 343431565459 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)