BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0014.p (325 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZB28.1 C0ZB28_BREBN ABC transporter permease protein 451 e-125 Q8ENN1.1 Q8ENN1_OCEIH Dipeptide ABC transporter permease 448 e-124 Q2B339.1 Q2B339_9BACI Putative uncharacterized protein 439 e-121 A6CLT0.1 A6CLT0_9BACI Putative uncharacterized protein 430 e-119 C3J743.1 C3J743_9BACI Binding-protein-dependent transport system... 429 e-118 >C0ZB28.1 C0ZB28_BREBN ABC transporter permease protein Length = 334 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 228/325 (70%), Positives = 271/325 (83%) Query: 1 MVLVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQALREQLGLDKPWLQQYFNYM 60 ++L+PVL+GM+IIVFSII AIPGDPA TILG+KAT Q+ +RE LGL+ PW QYF+YM Sbjct: 10 LMLIPVLVGMSIIVFSIIRAIPGDPALTILGEKATPQAIADIREALGLNNPWYIQYFDYM 69 Query: 61 GDLLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFD 120 ++L G+LG S++T PI+ EIMPY +GVNAGILSAW+QNSWFD Sbjct: 70 KNILSGNLGESLQTNAPISDEIMPYLAATTELTIVSMLIAVFIGVNAGILSAWKQNSWFD 129 Query: 121 YTAMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGRMDQRHPVESITNLYVIDTIIAG 180 Y AM+IALVGVSMPIFWLGLMEQ +FA +L WLPS+GR + R+P+E+IT+ Y++DT++AG Sbjct: 130 YCAMLIALVGVSMPIFWLGLMEQWVFAQELKWLPSVGRDNSRNPIEAITHFYILDTMMAG 189 Query: 181 QWGQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQFLVVYK 240 +W QLW VIKHLILP IALGTIPMAIIAR+TRSSMLEVM +DY+RTA+AKG+ QF VVYK Sbjct: 190 RWDQLWEVIKHLILPGIALGTIPMAIIARITRSSMLEVMRADYVRTARAKGLTQFWVVYK 249 Query: 241 HALKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQTGILII 300 HALKNALIPVLTV+GLQTG LLGGAVLTETIF WPGVGRYI AI +RDYPVIQ+GIL+I Sbjct: 250 HALKNALIPVLTVIGLQTGLLLGGAVLTETIFGWPGVGRYIVTAIGNRDYPVIQSGILVI 309 Query: 301 AFIFVVINLLVDLLYAAIDPRINYK 325 A IFV+INLLVDLLYA IDPRI Y+ Sbjct: 310 ATIFVLINLLVDLLYAYIDPRIKYR 334 >Q8ENN1.1 Q8ENN1_OCEIH Dipeptide ABC transporter permease Length = 333 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 211/324 (65%), Positives = 265/324 (81%) Query: 1 MVLVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQALREQLGLDKPWLQQYFNYM 60 ++L+PVL+GMTII FSI+H IPG+PA+ ILG+ ATEQS ++L E +GL++P+L QY Y+ Sbjct: 10 LMLIPVLLGMTIITFSIVHLIPGNPAKVILGETATEQSIKSLEESMGLNEPYLVQYSRYL 69 Query: 61 GDLLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFD 120 GDL+QGDLGTS+RTK I+ EI PY +GVNAGI+SAW+QNSWFD Sbjct: 70 GDLVQGDLGTSLRTKADISSEIWPYIAATFELTLFAMLFAIVIGVNAGIISAWKQNSWFD 129 Query: 121 YTAMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGRMDQRHPVESITNLYVIDTIIAG 180 + AM+ AL+GVSMP+FWL LMEQ +FA +L WLP+ R + R P+ IT+ YV+D++I Sbjct: 130 FLAMLFALIGVSMPVFWLALMEQWVFAQELGWLPANSRQNPRDPIAVITHFYVLDSLIHL 189 Query: 181 QWGQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQFLVVYK 240 + + T++KHL+LPSIALGTIPMAIIARMTRSSMLEVM SDYIRT +AKG QFLV+YK Sbjct: 190 DFERTLTILKHLVLPSIALGTIPMAIIARMTRSSMLEVMKSDYIRTVRAKGSGQFLVIYK 249 Query: 241 HALKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQTGILII 300 HALKNA+IPV+TV+GLQTG LLGGA+LTETIF+WPG+GRY+YEAIS RDYPVIQ+GIL+I Sbjct: 250 HALKNAIIPVITVIGLQTGVLLGGAILTETIFSWPGIGRYVYEAISFRDYPVIQSGILVI 309 Query: 301 AFIFVVINLLVDLLYAAIDPRINY 324 AF+FV+INL+VD+LY IDPRINY Sbjct: 310 AFLFVIINLIVDILYKKIDPRINY 333 >Q2B339.1 Q2B339_9BACI Putative uncharacterized protein Length = 334 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/323 (67%), Positives = 266/323 (82%) Query: 3 LVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQALREQLGLDKPWLQQYFNYMGD 62 L+PVL+G+++IVF +I AIPGDPA+ ILGQ AT+++ L EQLGLDKPW QYF Y+G Sbjct: 12 LIPVLLGLSLIVFFMIRAIPGDPAQIILGQLATKEAVADLTEQLGLDKPWFIQYFTYLGG 71 Query: 63 LLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFDYT 122 L GDLG S+RTK PI+ EI P+ GVNAGI+SAW QNSWFDY Sbjct: 72 LFTGDLGESLRTKAPISGEIWPFLAATMELSFCAMLIAIFFGVNAGIISAWFQNSWFDYI 131 Query: 123 AMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGRMDQRHPVESITNLYVIDTIIAGQW 182 AM++AL+GVSMPIFWLGLMEQ +FA+ L WLP+ GR + R+PVE+ITNLY+IDT++AG+ Sbjct: 132 AMVLALIGVSMPIFWLGLMEQWIFAINLDWLPTSGREEVRNPVEAITNLYIIDTLLAGRM 191 Query: 183 GQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQFLVVYKHA 242 Q W VI+HL+LPS+AL TIPMAIIAR+TRS+MLEVM SD+IRTA+AKG+ F VVYKH+ Sbjct: 192 DQFWDVIRHLVLPSLALSTIPMAIIARITRSTMLEVMRSDFIRTARAKGLRMFWVVYKHS 251 Query: 243 LKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQTGILIIAF 302 LKNA+IPVLT++GLQTG LLGGA+LTETIF+WPG+GRYIYEAI+ RDYPVIQ+GIL+IAF Sbjct: 252 LKNAIIPVLTIIGLQTGLLLGGAILTETIFSWPGIGRYIYEAINYRDYPVIQSGILVIAF 311 Query: 303 IFVVINLLVDLLYAAIDPRINYK 325 IFV+INL+VDLLYAAIDPRI Y Sbjct: 312 IFVMINLIVDLLYAAIDPRIKYN 334 >A6CLT0.1 A6CLT0_9BACI Putative uncharacterized protein Length = 334 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 218/323 (67%), Positives = 259/323 (80%) Query: 3 LVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQALREQLGLDKPWLQQYFNYMGD 62 L+PVL GMT IVF II AIPGDPA+TILGQ+AT+++ ALR QLGLD PW QYF Y+ Sbjct: 12 LIPVLFGMTFIVFMIIRAIPGDPAQTILGQQATKEAVAALRAQLGLDNPWYIQYFEYLAG 71 Query: 63 LLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFDYT 122 L QG+LG SIRTK+ +A EI PY +GVNAGI+SAW QNSWFDYT Sbjct: 72 LFQGNLGESIRTKSSVASEIWPYLAATFELALVAMVIAVVIGVNAGIISAWFQNSWFDYT 131 Query: 123 AMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGRMDQRHPVESITNLYVIDTIIAGQW 182 AMI+ALVGVS+PIFWLGLM Q +F ++L LP+ GR D R+PV +ITNLY++DT+I G + Sbjct: 132 AMILALVGVSVPIFWLGLMGQWVFGIQLDLLPTTGREDIRNPVNAITNLYLLDTLIQGDF 191 Query: 183 GQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQFLVVYKHA 242 + VI+HLILP +AL TIPMAIIARMTRSSMLEVM SDYIRTA+AKG+ FLVVYKH+ Sbjct: 192 QKFGAVIRHLILPGLALATIPMAIIARMTRSSMLEVMKSDYIRTARAKGLKMFLVVYKHS 251 Query: 243 LKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQTGILIIAF 302 LKNA+IPVLTV+GLQ G LLGGA+LTETIF WPG+GRYI++AIS RDYPVIQ+GIL++A Sbjct: 252 LKNAVIPVLTVIGLQMGLLLGGAILTETIFGWPGIGRYIFDAISYRDYPVIQSGILVVAA 311 Query: 303 IFVVINLLVDLLYAAIDPRINYK 325 IFV INL+VDLLYAA+DPRI Y Sbjct: 312 IFVTINLIVDLLYAAVDPRIKYN 334 >C3J743.1 C3J743_9BACI Binding-protein-dependent transport systems inner membrane component Length = 334 Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust. Identities = 216/325 (66%), Positives = 264/325 (81%) Query: 1 MVLVPVLIGMTIIVFSIIHAIPGDPAETILGQKATEQSKQALREQLGLDKPWLQQYFNYM 60 ++++PVL GM+++VF +I AIPG+PA+ ILGQKAT+++ AL +LGLD+PW QY Y+ Sbjct: 10 LMVIPVLFGMSLVVFFMIRAIPGNPAQVILGQKATKEAVAALTHKLGLDEPWYVQYVKYI 69 Query: 61 GDLLQGDLGTSIRTKTPIAKEIMPYXXXXXXXXXXXXXXXXXVGVNAGILSAWRQNSWFD 120 G LL GDLG SIRT PIA+EI PY +GVNAGI+SAW QNSWFD Sbjct: 70 GGLLHGDLGESIRTGAPIAEEIWPYLAATIELSLAAMLIAVIIGVNAGIISAWFQNSWFD 129 Query: 121 YTAMIIALVGVSMPIFWLGLMEQLLFALKLHWLPSIGRMDQRHPVESITNLYVIDTIIAG 180 Y AM++AL+GVSMPIFWLGLMEQ LF+++L WLP+ GR D R+PVE IT+LY+IDT+++G Sbjct: 130 YIAMVLALIGVSMPIFWLGLMEQWLFSIELDWLPTSGREDVRNPVEPITHLYLIDTLLSG 189 Query: 181 QWGQLWTVIKHLILPSIALGTIPMAIIARMTRSSMLEVMNSDYIRTAKAKGMPQFLVVYK 240 Q W V++HL+LPS+AL TIPMAIIARMTRSSMLEVM SDYIRTA+AKG+ F VVYK Sbjct: 190 NADQFWQVMQHLVLPSMALATIPMAIIARMTRSSMLEVMKSDYIRTARAKGLSMFWVVYK 249 Query: 241 HALKNALIPVLTVVGLQTGALLGGAVLTETIFAWPGVGRYIYEAISSRDYPVIQTGILII 300 H+LKNA+IPVLTV+GLQTG LLGGA+LTETIF+WPG+GRYIY+AI RDYPVIQ+GILII Sbjct: 250 HSLKNAIIPVLTVIGLQTGLLLGGAILTETIFSWPGIGRYIYDAIGYRDYPVIQSGILII 309 Query: 301 AFIFVVINLLVDLLYAAIDPRINYK 325 A IF+ INL+VDLLYA IDPRI Y Sbjct: 310 ATIFIFINLIVDLLYAIIDPRIKYN 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.141 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,761,658,487 Number of extensions: 67689339 Number of successful extensions: 254348 Number of sequences better than 1.0e-05: 6029 Number of HSP's gapped: 243012 Number of HSP's successfully gapped: 6351 Length of query: 325 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 189 Effective length of database: 1,779,438,163 Effective search space: 336313812807 Effective search space used: 336313812807 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)