BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0013.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5D5U4.1 C5D5U4_9BACI Binding-protein-dependent transport system... 353 1e-95 C3J742.1 C3J742_9BACI Binding-protein-dependent transport system... 349 2e-94 B7Y9L1.1 B7Y9L1_9BACI Binding-protein-dependent transport system... 349 2e-94 A4IKK8.1 A4IKK8_GEOTN Dipeptide transporter protein DppC 349 2e-94 B4BRM2.1 B4BRM2_9BACI Binding-protein-dependent transport system... 349 2e-94 >C5D5U4.1 C5D5U4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 175/299 (58%), Positives = 219/299 (73%), Gaps = 2/299 (0%) Query: 1 MGQVSMNVTPQSVPADKVSGP--WRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXY 58 M +++ N TP +K W++ W+ FR+NK A++GL Y Sbjct: 1 MAELARNQTPIHAVEEKEESASLWKEGWRRFRKNKMALVGLGIVVFFILLAIFAPLLAPY 60 Query: 59 GFKEQELVNRLKAPSAAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGI 118 FKEQ L RL+ PS+ H FGTDD GRD+F+R+IYGARISLWVGFF+V+GS+I G+ LGI Sbjct: 61 DFKEQNLAERLQPPSSKHLFGTDDFGRDIFSRVIYGARISLWVGFFSVLGSVIVGSMLGI 120 Query: 119 LAGFYGKWIDMLISRLFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVR 178 +AG+YG+WID +ISRLFDI+LAFPS GPSLQNAL AIA++NIP +GRL+R Sbjct: 121 IAGYYGRWIDGIISRLFDIMLAFPSILLAIGIVAVLGPSLQNALIAIAVINIPNFGRLIR 180 Query: 179 AKVLSLKSEEYITAARAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXX 238 ++VLS+K EEY+ AA+AIGM++ RIL HILPNS+ PIIVQGTL IATAIIE Sbjct: 181 SRVLSIKQEEYVMAAKAIGMSDMRILFHHILPNSMAPIIVQGTLAIATAIIEAAALGFLG 240 Query: 239 XXXQPPDPEWGKMLSDSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPRMKN 297 QPP+PEWGKML+DS+ F+ +APWT++FPGL+IMLTVLGFNLMGDGLRD LDPRMKN Sbjct: 241 LGAQPPNPEWGKMLADSKDFLTQAPWTMIFPGLAIMLTVLGFNLMGDGLRDALDPRMKN 299 >C3J742.1 C3J742_9BACI Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 171/288 (59%), Positives = 217/288 (75%) Query: 10 PQSVPADKVSGPWRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYGFKEQELVNRL 69 P ++ + W++AW+ FR+NK A++G Y +K+Q+L RL Sbjct: 12 PAAIRETESVSLWKEAWRRFRKNKIALVGAGIVLFFILVAILAPWLAPYDYKDQQLAERL 71 Query: 70 KAPSAAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGILAGFYGKWIDM 129 + PS+ HWFGTDD GRD+F+R+IYGARISLWVGFF+V+GS++ G+ LGI+AG+YG+WID Sbjct: 72 QPPSSEHWFGTDDFGRDIFSRVIYGARISLWVGFFSVLGSVMVGSLLGIIAGYYGRWIDG 131 Query: 130 LISRLFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVRAKVLSLKSEEY 189 +ISRLFDI+LAFPS GPSLQNAL AIA++N+P +GRL+R++VLS+K EEY Sbjct: 132 VISRLFDIMLAFPSILLAIGIVAVLGPSLQNALIAIAVINVPNFGRLIRSRVLSIKQEEY 191 Query: 190 ITAARAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXXXXXQPPDPEWG 249 I AA+AIGM++ RILL HILPNSL PIIVQGTL IATAIIE QPP+PEWG Sbjct: 192 IMAAKAIGMSDWRILLHHILPNSLAPIIVQGTLAIATAIIEAAALGFLGLGAQPPNPEWG 251 Query: 250 KMLSDSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPRMKN 297 KMLSD++ F+ +APWT++FPGL+IMLTVLGFNLMGDGLRD LDPRMKN Sbjct: 252 KMLSDAKDFLTQAPWTMIFPGLAIMLTVLGFNLMGDGLRDALDPRMKN 299 >B7Y9L1.1 B7Y9L1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 171/288 (59%), Positives = 217/288 (75%) Query: 10 PQSVPADKVSGPWRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYGFKEQELVNRL 69 P ++ + W++AW+ FR+NK A++G Y +K+Q+L RL Sbjct: 12 PAAIRETESVSLWKEAWRRFRKNKIALVGAGIVLFFILVAILAPWLAPYDYKDQQLAERL 71 Query: 70 KAPSAAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGILAGFYGKWIDM 129 + PS+ HWFGTDD GRD+F+R+IYGARISLWVGFF+V+GS++ G+ LGI+AG+YG+WID Sbjct: 72 QPPSSEHWFGTDDFGRDIFSRVIYGARISLWVGFFSVLGSVMVGSLLGIIAGYYGRWIDG 131 Query: 130 LISRLFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVRAKVLSLKSEEY 189 +ISRLFDI+LAFPS GPSLQNAL AIA++N+P +GRL+R++VLS+K EEY Sbjct: 132 VISRLFDIMLAFPSILLAIGIVAVLGPSLQNALIAIAVINVPNFGRLIRSRVLSIKQEEY 191 Query: 190 ITAARAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXXXXXQPPDPEWG 249 I AA+AIGM++ RILL HILPNSL PIIVQGTL IATAIIE QPP+PEWG Sbjct: 192 IMAAKAIGMSDWRILLHHILPNSLAPIIVQGTLAIATAIIEAAALGFLGLGAQPPNPEWG 251 Query: 250 KMLSDSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPRMKN 297 KMLSD++ F+ +APWT++FPGL+IMLTVLGFNLMGDGLRD LDPRMKN Sbjct: 252 KMLSDAKDFLTQAPWTMIFPGLAIMLTVLGFNLMGDGLRDALDPRMKN 299 >A4IKK8.1 A4IKK8_GEOTN Dipeptide transporter protein DppC Length = 299 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 171/288 (59%), Positives = 216/288 (75%) Query: 10 PQSVPADKVSGPWRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYGFKEQELVNRL 69 P ++ ++ W +AW+ FR+NK A++G Y +KEQ+L RL Sbjct: 12 PTAIEEERTVSLWGEAWQRFRKNKIALVGTGIVLFFIMIAILAPWLAPYDYKEQQLAERL 71 Query: 70 KAPSAAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGILAGFYGKWIDM 129 + PS+ HWFGTDD GRD+F+R+IYGARISLWVGFF+V+GSI+ G+ LGI+AG+YG+WID Sbjct: 72 QPPSSEHWFGTDDFGRDIFSRVIYGARISLWVGFFSVLGSIVVGSLLGIIAGYYGRWIDG 131 Query: 130 LISRLFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVRAKVLSLKSEEY 189 +ISRLFDI+LAFPS GPSLQNAL AIA++N+P +GRL+R++VLS+K EEY Sbjct: 132 VISRLFDIMLAFPSILLAIGIVAVLGPSLQNALIAIAVINVPNFGRLIRSRVLSIKQEEY 191 Query: 190 ITAARAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXXXXXQPPDPEWG 249 I AA+AIGM++ RIL HILPNSL PIIVQGTL IATAIIE QPP+PEWG Sbjct: 192 IMAAKAIGMSDWRILFHHILPNSLAPIIVQGTLAIATAIIEAAALGFLGLGAQPPNPEWG 251 Query: 250 KMLSDSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPRMKN 297 KMLSD++ F+ +APWT++FPGL+IMLTVLGFNLMGDGLRD LDPRMK+ Sbjct: 252 KMLSDAKDFLTQAPWTMIFPGLAIMLTVLGFNLMGDGLRDALDPRMKS 299 >B4BRM2.1 B4BRM2_9BACI Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 171/288 (59%), Positives = 216/288 (75%) Query: 10 PQSVPADKVSGPWRDAWKAFRRNKTAMLGLCXXXXXXXXXXXXXXXXXYGFKEQELVNRL 69 P ++ ++ W +AW+ FR+NK A++G Y +KEQ+L RL Sbjct: 12 PTAIEEERTVSLWGEAWQRFRKNKIALVGTGIVLFFIMIAILAPWLAPYDYKEQQLAERL 71 Query: 70 KAPSAAHWFGTDDLGRDMFTRIIYGARISLWVGFFAVIGSIIAGTFLGILAGFYGKWIDM 129 + PS+ HWFGTDD GRD+F+R+IYGARISLWVGFF+V+GSI+ G+ LGI+AG+YG+WID Sbjct: 72 QPPSSEHWFGTDDFGRDIFSRVIYGARISLWVGFFSVLGSIVVGSLLGIIAGYYGRWIDG 131 Query: 130 LISRLFDILLAFPSXXXXXXXXXXXGPSLQNALYAIAIVNIPTYGRLVRAKVLSLKSEEY 189 +ISRLFDI+LAFPS GPSLQNAL AIA++N+P +GRL+R++VLS+K EEY Sbjct: 132 VISRLFDIMLAFPSILLAIGIVAVLGPSLQNALIAIAVINVPNFGRLIRSRVLSIKQEEY 191 Query: 190 ITAARAIGMTNTRILLTHILPNSLTPIIVQGTLGIATAIIEXXXXXXXXXXXQPPDPEWG 249 I AA+AIGM++ RIL HILPNSL PIIVQGTL IATAIIE QPP+PEWG Sbjct: 192 IMAAKAIGMSDWRILFHHILPNSLAPIIVQGTLAIATAIIEAAALGFLGLGAQPPNPEWG 251 Query: 250 KMLSDSRQFIQKAPWTVVFPGLSIMLTVLGFNLMGDGLRDVLDPRMKN 297 KMLSD++ F+ +APWT++FPGL+IMLTVLGFNLMGDGLRD LDPRMK+ Sbjct: 252 KMLSDAKDFLTQAPWTMIFPGLAIMLTVLGFNLMGDGLRDALDPRMKS 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,495,788,645 Number of extensions: 50965207 Number of successful extensions: 194981 Number of sequences better than 1.0e-05: 5995 Number of HSP's gapped: 188622 Number of HSP's successfully gapped: 6033 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)