BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0153.0012.p
         (264 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C2YKZ6.1 C2YKZ6_BACCE Putative uncharacterized protein                268   4e-70
C2V670.1 C2V670_BACCE Molybdenum ABC transporter, periplasmic mo...   267   7e-70
C2UPV1.1 C2UPV1_BACCE Molybdenum ABC transporter, periplasmic mo...   267   7e-70
C2TRM7.1 C2TRM7_BACCE Molybdenum ABC transporter, periplasmic mo...   267   7e-70
B9J0J3.1 B9J0J3_BACCQ Molybdenum ABC transporter, substrate-bind...   267   9e-70

>C2YKZ6.1 C2YKZ6_BACCE Putative uncharacterized protein
          Length = 268

 Score =  268 bits (684), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 173/236 (73%), Gaps = 5/236 (2%)

Query: 28  EKQVQAASKT-EIMVSAAASLQDSLDKIAVLYEKQHPDIDLVFNYGASGTLQKQIEQGAP 86
           EK      KT E+ +SAAASLQD+L +I   Y++  P+I L FN+GASG LQ+QIEQGAP
Sbjct: 31  EKSTAKEGKTVELTISAAASLQDALKEIETKYKETEPNIKLSFNFGASGALQQQIEQGAP 90

Query: 87  ADLFFSAGDKQMTALVDGGLVSDH--KELLKNQLVLVVPSDSKASITAITQLTDKGFKKV 144
           ADLFFSA + +  ALV  G +++   K LL N+LVLVVP DS  S+T I  L D+  KK+
Sbjct: 91  ADLFFSAAEDKFQALVKKGFINEKEGKNLLGNELVLVVPKDS--SLTKIQDLKDEKIKKI 148

Query: 145 AVGQPESVPAGQYAQQSLTAKKVWDKLQSKLVFAKDVRQVLSYVETGNADAGFVYKTDAL 204
           A+G PESVPAG+YA+ SLT + +W+ +Q+K+VF KDVRQVL+YVETGN DAG VYKTDAL
Sbjct: 149 ALGTPESVPAGKYAKASLTHENLWNDIQNKIVFTKDVRQVLTYVETGNVDAGIVYKTDAL 208

Query: 205 TSSKVKIALTVGAHVHKAINYPVGIVKDSKHTAEAKAFYSYVQTKAASDIFTSYGF 260
            S+KVKI  T  A  H+ I+YP+G++K+SKH  EA +FY Y+Q+K A  IF  YGF
Sbjct: 209 ISNKVKIGETAAATSHEPIHYPLGVIKESKHKKEATSFYEYLQSKDAQSIFKKYGF 264


>C2V670.1 C2V670_BACCE Molybdenum ABC transporter, periplasmic
           molybdate-binding protein
          Length = 268

 Score =  267 bits (683), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 173/236 (73%), Gaps = 5/236 (2%)

Query: 28  EKQVQAASKT-EIMVSAAASLQDSLDKIAVLYEKQHPDIDLVFNYGASGTLQKQIEQGAP 86
           EK V    KT E+ +SAAASLQD+L +I   Y+++ P+I L FN+GASG LQ+QIEQGAP
Sbjct: 31  EKSVAKERKTVELTISAAASLQDALKEIEKQYKEKKPNIKLSFNFGASGALQQQIEQGAP 90

Query: 87  ADLFFSAGDKQMTALVDGGLVSDH--KELLKNQLVLVVPSDSKASITAITQLTDKGFKKV 144
           ADLFFSA + +   LV  G +++   K LL N+LVLVVP DS  S+T I  L D+  KK+
Sbjct: 91  ADLFFSAAEDKFQTLVKKGFINEKEGKNLLGNELVLVVPKDS--SLTKIQDLKDEKIKKI 148

Query: 145 AVGQPESVPAGQYAQQSLTAKKVWDKLQSKLVFAKDVRQVLSYVETGNADAGFVYKTDAL 204
           A+G PESVPAG+YA+ SLT + +W+ +Q+K+VF KDVRQVL+YVETGN DAG VYKTDAL
Sbjct: 149 ALGTPESVPAGKYAKASLTHENLWNDIQNKIVFTKDVRQVLTYVETGNVDAGIVYKTDAL 208

Query: 205 TSSKVKIALTVGAHVHKAINYPVGIVKDSKHTAEAKAFYSYVQTKAASDIFTSYGF 260
            S KVKI  T  A  H+ I+YP+G++K+SKH  EA +FY Y+Q+K A  IF  YGF
Sbjct: 209 ISDKVKIGETAAATSHEPIHYPLGVIKESKHKKEATSFYEYLQSKDAQSIFKKYGF 264


>C2UPV1.1 C2UPV1_BACCE Molybdenum ABC transporter, periplasmic
           molybdate-binding protein
          Length = 268

 Score =  267 bits (683), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 173/236 (73%), Gaps = 5/236 (2%)

Query: 28  EKQVQAASKT-EIMVSAAASLQDSLDKIAVLYEKQHPDIDLVFNYGASGTLQKQIEQGAP 86
           EK V    KT E+ +SAAASLQD+L +I   Y+++ P+I L FN+GASG LQ+QIEQGAP
Sbjct: 31  EKSVAKERKTVELTISAAASLQDALKEIEKQYKEKKPNIKLSFNFGASGALQQQIEQGAP 90

Query: 87  ADLFFSAGDKQMTALVDGGLVSDH--KELLKNQLVLVVPSDSKASITAITQLTDKGFKKV 144
           ADLFFSA + +   LV  G +++   K LL N+LVLVVP DS  S+T I  L D+  KK+
Sbjct: 91  ADLFFSAAEDKFQTLVKKGFINEKEGKNLLGNELVLVVPKDS--SLTKIQDLKDEKIKKI 148

Query: 145 AVGQPESVPAGQYAQQSLTAKKVWDKLQSKLVFAKDVRQVLSYVETGNADAGFVYKTDAL 204
           A+G PESVPAG+YA+ SLT + +W+ +Q+K+VF KDVRQVL+YVETGN DAG VYKTDAL
Sbjct: 149 ALGTPESVPAGKYAKASLTHENLWNDIQNKIVFTKDVRQVLTYVETGNVDAGIVYKTDAL 208

Query: 205 TSSKVKIALTVGAHVHKAINYPVGIVKDSKHTAEAKAFYSYVQTKAASDIFTSYGF 260
            S KVKI  T  A  H+ I+YP+G++K+SKH  EA +FY Y+Q+K A  IF  YGF
Sbjct: 209 ISDKVKIGETAAATSHEPIHYPLGVIKESKHKKEATSFYEYLQSKDAQSIFKKYGF 264


>C2TRM7.1 C2TRM7_BACCE Molybdenum ABC transporter, periplasmic
           molybdate-binding protein
          Length = 268

 Score =  267 bits (683), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 135/236 (57%), Positives = 173/236 (73%), Gaps = 5/236 (2%)

Query: 28  EKQVQAASKT-EIMVSAAASLQDSLDKIAVLYEKQHPDIDLVFNYGASGTLQKQIEQGAP 86
           EK V    KT E+ +SAAASLQD+L +I   Y+++ P+I L FN+GASG LQ+QIEQGAP
Sbjct: 31  EKSVAKERKTVELTISAAASLQDALKEIEKQYKEKKPNIKLSFNFGASGALQQQIEQGAP 90

Query: 87  ADLFFSAGDKQMTALVDGGLVSDH--KELLKNQLVLVVPSDSKASITAITQLTDKGFKKV 144
           ADLFFSA + +   LV  G +++   K LL N+LVLVVP DS  S+T I  L D+  KK+
Sbjct: 91  ADLFFSAAEDKFQTLVKKGFINEKEGKNLLGNELVLVVPKDS--SLTKIQDLKDEKIKKI 148

Query: 145 AVGQPESVPAGQYAQQSLTAKKVWDKLQSKLVFAKDVRQVLSYVETGNADAGFVYKTDAL 204
           A+G PESVPAG+YA+ SLT + +W+ +Q+K+VF KDVRQVL+YVETGN DAG VYKTDAL
Sbjct: 149 ALGTPESVPAGKYAKASLTHENLWNDIQNKIVFTKDVRQVLTYVETGNVDAGIVYKTDAL 208

Query: 205 TSSKVKIALTVGAHVHKAINYPVGIVKDSKHTAEAKAFYSYVQTKAASDIFTSYGF 260
            S KVKI  T  A  H+ I+YP+G++K+SKH  EA +FY Y+Q+K A  IF  YGF
Sbjct: 209 ISDKVKIGETAAATSHEPIHYPLGVIKESKHKKEATSFYEYLQSKDAQSIFKKYGF 264


>B9J0J3.1 B9J0J3_BACCQ Molybdenum ABC transporter, substrate-binding protein
          Length = 268

 Score =  267 bits (682), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 134/236 (56%), Positives = 173/236 (73%), Gaps = 5/236 (2%)

Query: 28  EKQVQAASKT-EIMVSAAASLQDSLDKIAVLYEKQHPDIDLVFNYGASGTLQKQIEQGAP 86
           EK      KT E+ +SAAASLQD+L +I   Y+++ P+I L FN+GASG LQ+QIEQGAP
Sbjct: 31  EKSTAKEGKTVELTISAAASLQDALKEIETKYKEKEPNIKLSFNFGASGALQQQIEQGAP 90

Query: 87  ADLFFSAGDKQMTALVDGGLVSDH--KELLKNQLVLVVPSDSKASITAITQLTDKGFKKV 144
           ADLFFSA + +   LV  G +++   K LL N+LVLVVP DS  S+T I  L D+  KK+
Sbjct: 91  ADLFFSAAEDKFQTLVKKGFINEQEGKNLLGNELVLVVPKDS--SLTKIQDLKDEKIKKI 148

Query: 145 AVGQPESVPAGQYAQQSLTAKKVWDKLQSKLVFAKDVRQVLSYVETGNADAGFVYKTDAL 204
           A+G PESVPAG+YA+ SLT + +W+ +Q+K+VF KDVRQVL+YVETGN DAG VYKTDAL
Sbjct: 149 ALGTPESVPAGKYAKASLTHENLWNDIQNKVVFTKDVRQVLTYVETGNVDAGIVYKTDAL 208

Query: 205 TSSKVKIALTVGAHVHKAINYPVGIVKDSKHTAEAKAFYSYVQTKAASDIFTSYGF 260
            S+KVKI  T  A  H+ I+YP+G++K+SKH  EA +FY Y+Q+K A  IF  YGF
Sbjct: 209 ISNKVKIGETAAATSHEPIHYPLGVIKESKHKKEATSFYEYLQSKDAQSIFKKYGF 264


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.128    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,328,524,878
Number of extensions: 49184777
Number of successful extensions: 151330
Number of sequences better than 1.0e-05: 1118
Number of HSP's gapped: 149320
Number of HSP's successfully gapped: 1118
Length of query: 264
Length of database: 3,060,696,203
Length adjustment: 133
Effective length of query: 131
Effective length of database: 1,807,701,208
Effective search space: 236808858248
Effective search space used: 236808858248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 130 (54.7 bits)