BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0011.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDF2.1 B3KDF2_9BACI Molybdate ABC transporter, inner membrane ... 186 1e-45 Q2BEX2.1 Q2BEX2_9BACI Molybdenum transport system (Permease) 177 6e-43 Q65LK1.1 Q65LK1_BACLD YvgM 176 1e-42 B1DGA5.1 B1DGA5_9BACL Molybdate ABC transporter, inner membrane ... 174 5e-42 Q9K7N3.1 Q9K7N3_BACHD Molybdenum transport system (Permease) 167 8e-40 >B3KDF2.1 B3KDF2_9BACI Molybdate ABC transporter, inner membrane subunit Length = 224 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/217 (43%), Positives = 125/217 (57%) Query: 2 EINWTDFFAPVWLXXXXXXXXXXXXFLLATLAAKAMAGRRFPGYSXXXXXXXXXXXXXXX 61 +NW +F+ P+ L LL AA M+ + F G + Sbjct: 5 NMNWNEFWLPIKLSLQVSVLSSLTVVLLGVAAAWWMSRKSFKGKTVLETAFMLPLVLPPT 64 Query: 62 XXXXXXXXILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEK 121 ILGR+SW G+ E ++FTW FPLVY+T+K GF V + Sbjct: 65 VVGFVLLVILGRKSWFGQWIEWLFAAPVIFTWWAAVIASVVVAFPLVYQTMKVGFSSVHR 124 Query: 122 DLEDAARAQGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQT 181 ++E+AAR+ GA+E QV Y+TLPL RSL Y+LGFARGLGEFGAT+M+AGNIPG+TQT Sbjct: 125 EVEEAARSNGANEWQVFRYITLPLTYRSLVTAYILGFARGLGEFGATLMIAGNIPGKTQT 184 Query: 182 VPTAIYVAVDGGNMTLAWLWVCSIIAISALMLMFVNR 218 +PTAI+VAVD GN T+AW W S+I IS +ML+ R Sbjct: 185 IPTAIFVAVDAGNTTMAWAWTASMIMISFIMLLLTRR 221 >Q2BEX2.1 Q2BEX2_9BACI Molybdenum transport system (Permease) Length = 218 Score = 177 bits (449), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 89/214 (41%), Positives = 123/214 (57%) Query: 7 DFFAPVWLXXXXXXXXXXXXFLLATLAAKAMAGRRFPGYSXXXXXXXXXXXXXXXXXXXX 66 DF++PV L F L A+ +A ++F G Sbjct: 4 DFWSPVRLSISVAAISLAIVFAAGILLARLLAFKKFKGKPLIETILLLPLVLPPSVVGFL 63 Query: 67 XXXILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDA 126 + G++S+ G+ E F ++FTW FPL+Y++ K GFE +EK++EDA Sbjct: 64 LIIVFGKQSFFGRAIEIFIGQPVIFTWLAAVIASSVVAFPLMYQSAKTGFETIEKEIEDA 123 Query: 127 ARAQGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAI 186 +R GASE++V Y+ LPL+ ++LAAG +L FAR LGEFGAT+M AGNIPG+TQT+PTAI Sbjct: 124 SRVDGASEVKVFLYIALPLSAKALAAGAILSFARALGEFGATLMFAGNIPGKTQTIPTAI 183 Query: 187 YVAVDGGNMTLAWLWVCSIIAISALMLMFVNRRS 220 Y A+D GNM +AWLW +I IS +ML VN S Sbjct: 184 YFAIDSGNMEMAWLWTAVMIGISFIMLAAVNAFS 217 >Q65LK1.1 Q65LK1_BACLD YvgM Length = 218 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 122/214 (57%) Query: 7 DFFAPVWLXXXXXXXXXXXXFLLATLAAKAMAGRRFPGYSXXXXXXXXXXXXXXXXXXXX 66 +F +P+ + LL T AA+ +A R F G S Sbjct: 4 EFLSPIEISIQVSAAAGIIAVLLGTAAARLLANRNFKGKSIIETVMMLPLVLPPTVVGFF 63 Query: 67 XXXILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDA 126 I GR+S IG+L E + ++FTW FPL+Y++ K+GF V++D+EDA Sbjct: 64 LIVIFGRQSVIGRLIENVFQAPVIFTWWAAVIAAAVVAFPLMYQSAKSGFLAVDRDIEDA 123 Query: 127 ARAQGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAI 186 AR GA+E +V +VT+PLA + G VL FAR LGEFGAT+M AG IPG TQTVPTAI Sbjct: 124 ARVDGANEWRVFLFVTVPLASNGIMTGIVLSFARALGEFGATLMFAGIIPGVTQTVPTAI 183 Query: 187 YVAVDGGNMTLAWLWVCSIIAISALMLMFVNRRS 220 Y+A+D GNMTLAW+WV SI IS LML FV + Sbjct: 184 YLAIDSGNMTLAWMWVASIAIISFLMLFFVQFKQ 217 >B1DGA5.1 B1DGA5_9BACL Molybdate ABC transporter, inner membrane subunit Length = 217 Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 85/147 (57%), Positives = 108/147 (73%), Gaps = 1/147 (0%) Query: 73 RRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARAQGA 132 RRSW+G+ E ++FTW FPLVY+T+K GF+ V+K LE+A R+ GA Sbjct: 72 RRSWLGQAIEWLFSAPVIFTWWAAVIAAVVVSFPLVYQTMKVGFQSVDKKLEEAGRSIGA 131 Query: 133 SELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVAVDG 192 +E QV ++TLPLA RSL + Y+LGFARGLGEFGAT+M+AGNIPG+TQT+PTAIYVAVD Sbjct: 132 NERQVFWHITLPLAFRSLISAYILGFARGLGEFGATLMIAGNIPGKTQTIPTAIYVAVDS 191 Query: 193 GNMTLAWLWVCSIIAISALMLMFVNRR 219 GN TLAW W SII IS +L+ ++RR Sbjct: 192 GNTTLAWAWTGSIIVIS-FILLLISRR 217 >Q9K7N3.1 Q9K7N3_BACHD Molybdenum transport system (Permease) Length = 176 Score = 167 bits (422), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 80/148 (54%), Positives = 107/148 (72%) Query: 70 ILGRRSWIGKLYEQFTEHTILFTWGXXXXXXXXXXFPLVYRTVKAGFEGVEKDLEDAARA 129 I GR+S IG+ E + I+FTW FPL+Y++ K+GFE +++++EDA+R Sbjct: 23 IFGRQSPIGQGIEWVFQQPIMFTWWAAVIAATVVAFPLMYQSAKSGFETIDREIEDASRV 82 Query: 130 QGASELQVLAYVTLPLAGRSLAAGYVLGFARGLGEFGATIMVAGNIPGRTQTVPTAIYVA 189 GA+E QV VT+PLA R++ AG +L FAR LGEFGAT+M AGNIPGRTQT+PTAIY+A Sbjct: 83 DGANERQVFLLVTVPLASRAIVAGAILSFARALGEFGATLMFAGNIPGRTQTIPTAIYIA 142 Query: 190 VDGGNMTLAWLWVCSIIAISALMLMFVN 217 +D GNM LAWLWV +I+ IS ML+ +N Sbjct: 143 MDAGNMELAWLWVLTILVISFTMLLVLN 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.139 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,001,425,898 Number of extensions: 32360168 Number of successful extensions: 131299 Number of sequences better than 1.0e-05: 2278 Number of HSP's gapped: 131738 Number of HSP's successfully gapped: 2278 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)