BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0006.p (331 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KDF0.1 B3KDF0_9BACI DNA binding domain protein, excisionase fa... 404 e-111 B1DKQ2.1 B1DKQ2_9BACL DNA binding domain protein, excisionase fa... 398 e-109 C0ZBV7.1 C0ZBV7_BREBN Putative uncharacterized protein yvgK 381 e-104 C5D255.1 C5D255_9BACI DNA binding domain protein, excisionase fa... 366 2e-99 Q5KWE6.1 Q5KWE6_GEOKA Molybdenum-binding protein 341 7e-92 >B3KDF0.1 B3KDF0_9BACI DNA binding domain protein, excisionase family Length = 316 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/331 (62%), Positives = 254/331 (76%), Gaps = 15/331 (4%) Query: 1 MSENTSYTTEEIARLLKISKLKVYDLIKKGELPSYRVGKQMRVDLSDLEAYKQHSRSGIS 60 MS + SYTTEEIA+LLKISKL VYDLIKKGELPSYRVGKQMRVD +DLEAYKQ +R+ + Sbjct: 1 MSNDMSYTTEEIAKLLKISKLTVYDLIKKGELPSYRVGKQMRVDAADLEAYKQRTRT-VP 59 Query: 61 GSIPPVSAPAETPLFIPPSXXXXXXXXXXXXXGKAATDNVVITGQDMSLDLLATHLERSE 120 S PV A + +P+ PP+ + +VITG D+SLD+LA H+E++ Sbjct: 60 VSNQPVEALSPSPIQ-PPTFT-------------SGNRPIVITGHDISLDILAKHMEQTI 105 Query: 121 TSFRPLRSYAGSLDSLIAMYHGESDIVSTHLLDGDSGEYNLPYIRRLLVGFSYIVVHMLT 180 + RPLRS+ GSLDSLI+MY GESDIVSTHLLDGD+GEYNLPYIR+LLVG SY+VV++L+ Sbjct: 106 PAIRPLRSFVGSLDSLISMYRGESDIVSTHLLDGDTGEYNLPYIRKLLVGSSYVVVNLLS 165 Query: 181 RSAGFYVQKGNPQGIRSWSDLKQSGIRIINRERGAGARVLLDEQLRLHGIPASQISGYAV 240 R+AG YVQ GNP G+R WSDL +SG+R +NRE+G+GARVLLDEQLRLHGI Q+SGY Sbjct: 166 RNAGLYVQPGNPFGLRGWSDLDRSGLRFVNREKGSGARVLLDEQLRLHGINPEQLSGYDH 225 Query: 241 EENSHLAIAGRVARGEADVGIGTEKAAKIIDGVDFIPLIQERYDLVMLKKPGHETLIRTV 300 + +HL +A +VA GEADVG+G EKAA II +DFIPLIQERYDLV+LK +T I + Sbjct: 226 IQTNHLGVATKVATGEADVGVGIEKAASIIGQIDFIPLIQERYDLVILKTTWSQTWIPAL 285 Query: 301 LDILRSAAFQNELSSIHGYDLSETGTVIYET 331 L IL+S FQ EL SI G+D+S TG V++ET Sbjct: 286 LQILQSDTFQKELRSIPGFDVSRTGEVLFET 316 >B1DKQ2.1 B1DKQ2_9BACL DNA binding domain protein, excisionase family Length = 332 Score = 398 bits (1023), Expect = e-109, Method: Compositional matrix adjust. Identities = 201/333 (60%), Positives = 249/333 (74%), Gaps = 18/333 (5%) Query: 1 MSENTSYTTEEIARLLKISKLKVYDLIKKGELPSYRVGKQMRVDLSDLEAYKQHSRSGIS 60 M+++ SYTTEEIA++LK+SKL VYDLIKKG+LPSYRVGKQMRVD SDLEAYK +++ Sbjct: 16 MADDISYTTEEIAQILKVSKLTVYDLIKKGDLPSYRVGKQMRVDASDLEAYKLKTKNAGK 75 Query: 61 GS--IPPVSAPAETPLFIPPSXXXXXXXXXXXXXGKAATDNVVITGQDMSLDLLATHLER 118 G+ P+ A++ P ++ +VITGQD+SLDLLA H+E+ Sbjct: 76 GTEFSAPIHPIAQSANSFPV----------------GSSRPIVITGQDVSLDLLAKHMEK 119 Query: 119 SETSFRPLRSYAGSLDSLIAMYHGESDIVSTHLLDGDSGEYNLPYIRRLLVGFSYIVVHM 178 RPLRSY GSLDSLI+MY GESDIVSTHLLDG+SGEYNLPY+RRLL+G SY VVH+ Sbjct: 120 HIPGIRPLRSYVGSLDSLISMYKGESDIVSTHLLDGESGEYNLPYVRRLLIGSSYKVVHL 179 Query: 179 LTRSAGFYVQKGNPQGIRSWSDLKQSGIRIINRERGAGARVLLDEQLRLHGIPASQISGY 238 L R AG YV KGNP + W+DL + G+R +NRE+G+GARVLLDEQLRLHGI A Q++GY Sbjct: 180 LKRRAGLYVAKGNPLQLGGWADLGRPGLRFVNREKGSGARVLLDEQLRLHGIKAEQLTGY 239 Query: 239 AVEENSHLAIAGRVARGEADVGIGTEKAAKIIDGVDFIPLIQERYDLVMLKKPGHETLIR 298 EE++H+ +AG+VA GEADVG+G EKAA I+ VDFIPLIQE+YDLV+LKKP + I Sbjct: 240 EHEESNHIGVAGKVASGEADVGVGIEKAANIVGNVDFIPLIQEQYDLVLLKKPENMAWIA 299 Query: 299 TVLDILRSAAFQNELSSIHGYDLSETGTVIYET 331 V I+ S AFQNEL S+ GYDLS TG V++ET Sbjct: 300 AVQGIINSPAFQNELRSVSGYDLSLTGQVLFET 332 >C0ZBV7.1 C0ZBV7_BREBN Putative uncharacterized protein yvgK Length = 319 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 186/331 (56%), Positives = 246/331 (74%), Gaps = 13/331 (3%) Query: 1 MSENTSYTTEEIARLLKISKLKVYDLIKKGELPSYRVGKQMRVDLSDLEAYKQHSRSGIS 60 MS+ SYTTEEIA++L+ISKL VYDLIKKGELP+YRVG+QMRVD SDLEAYK ++ G+ Sbjct: 1 MSQQNSYTTEEIAKILRISKLTVYDLIKKGELPAYRVGRQMRVDESDLEAYKAKAK-GVY 59 Query: 61 GSIPPVSAPAETPLFIPPSXXXXXXXXXXXXXGKAATDNVVITGQDMSLDLLATHLERSE 120 VS P G+ N++I+GQD+SLDLLA HLE+ + Sbjct: 60 RQASAVSIP-------QTEQAQQSARYEQTGTGR----NIIISGQDVSLDLLAGHLEKKD 108 Query: 121 TSFRPLRSYAGSLDSLIAMYHGESDIVSTHLLDGDSGEYNLPYIRRLLVGFSYIVVHMLT 180 ++RPLRSY GSL+SL+AMY G++DIVSTHL DGD+ EYN+PYIRR+L G ++V++ML+ Sbjct: 109 EAYRPLRSYVGSLNSLVAMYTGKADIVSTHLYDGDTNEYNVPYIRRILCGHRFVVINMLS 168 Query: 181 RSAGFYVQKGNPQGIRSWSDLKQSGIRIINRERGAGARVLLDEQLRLHGIPASQISGYAV 240 R AGFYVQ GNP+ I++WSD + GIR++NRE+G+GAR L++EQ RL I S + GY Sbjct: 169 RWAGFYVQAGNPKQIKAWSDFTKPGIRMVNREKGSGARTLIEEQFRLAKIAGSDVIGYER 228 Query: 241 EENSHLAIAGRVARGEADVGIGTEKAAKIIDGVDFIPLIQERYDLVMLKKPGHETLIRTV 300 EE++HLA+AG VAR EADVG+G EKAA ++ GV+F+P ++ERYDLV+LK +E LI+ V Sbjct: 229 EESNHLAVAGVVARREADVGVGIEKAASLV-GVEFVPTVRERYDLVLLKNKDNEQLIQAV 287 Query: 301 LDILRSAAFQNELSSIHGYDLSETGTVIYET 331 LD+L S FQ EL ++ GYDLS+TG ++YET Sbjct: 288 LDVLGSRPFQKELEAVGGYDLSQTGKIMYET 318 >C5D255.1 C5D255_9BACI DNA binding domain protein, excisionase family Length = 315 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 182/331 (54%), Positives = 238/331 (71%), Gaps = 16/331 (4%) Query: 1 MSENTSYTTEEIARLLKISKLKVYDLIKKGELPSYRVGKQMRVDLSDLEAYKQHSRSGIS 60 M +N SYTTEE+A +LK+SKL VYDL+KKG LP+YRVG+QMR+D SDLE Y + S+ G Sbjct: 1 MEKNHSYTTEEVANILKVSKLTVYDLVKKGLLPAYRVGRQMRIDPSDLEEYIKRSK-GEL 59 Query: 61 GSIPPVSAPAETPLFIPPSXXXXXXXXXXXXXGKAATDNVVITGQDMSLDLLATHLERSE 120 S ET G + ++I+GQD+SLD+LA +LE+S Sbjct: 60 QPSSSQSLSKETT---------------SGAQGYSQVRQLIISGQDISLDILANYLEKSS 104 Query: 121 TSFRPLRSYAGSLDSLIAMYHGESDIVSTHLLDGDSGEYNLPYIRRLLVGFSYIVVHMLT 180 FRPLRSY GSL+SLI+MY G SDIVSTHL++G SGEYN+PYI ++LV F YIV+H+LT Sbjct: 105 KRFRPLRSYVGSLESLISMYQGYSDIVSTHLIEGISGEYNVPYISKILVNFQYIVIHLLT 164 Query: 181 RSAGFYVQKGNPQGIRSWSDLKQSGIRIINRERGAGARVLLDEQLRLHGIPASQISGYAV 240 R AGFYV+KGNP I+ W DL++ I+I+NRE+G+GARVLLDE LR + IP S+I+GY Sbjct: 165 RKAGFYVKKGNPLNIKHWEDLRRKDIKIVNREKGSGARVLLDESLRKYRIPISEINGYDN 224 Query: 241 EENSHLAIAGRVARGEADVGIGTEKAAKIIDGVDFIPLIQERYDLVMLKKPGHETLIRTV 300 E +H+++A VA+G+ADVG+G EKAA ++ VDFIPL+ ERYDLV+LK + LI V Sbjct: 225 EVTNHVSVASAVAKGDADVGVGIEKAADLVKDVDFIPLVNERYDLVILKNDENRELISQV 284 Query: 301 LDILRSAAFQNELSSIHGYDLSETGTVIYET 331 L ILRS F+N+L ++ GYDLS+TG V+YE Sbjct: 285 LQILRSDNFKNDLKALGGYDLSQTGQVVYEN 315 >Q5KWE6.1 Q5KWE6_GEOKA Molybdenum-binding protein Length = 307 Score = 341 bits (874), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 175/330 (53%), Positives = 231/330 (70%), Gaps = 25/330 (7%) Query: 1 MSENTSYTTEEIARLLKISKLKVYDLIKKGELPSYRVGKQMRVDLSDLEAYKQHSRSGIS 60 M E SYT EEIA LLK+SKL VYDL+KKG+LP++RVG+QMR+ DL+ Y + S Sbjct: 1 MPEPQSYTIEEIASLLKVSKLTVYDLVKKGKLPAFRVGRQMRITADDLKRYIAGQKGEAS 60 Query: 61 GSIPPVSAPAETPLFIPPSXXXXXXXXXXXXXGKAATDNVVITGQDMSLDLLATHLERSE 120 P VS P ET F P ++I+GQDM+LDLL HLE+ Sbjct: 61 TVSPAVSRPTETA-FRP----------------------IIISGQDMALDLLGAHLEKG- 96 Query: 121 TSFRPLRSYAGSLDSLIAMYHGESDIVSTHLLDGDSGEYNLPYIRRLLVGFSYIVVHMLT 180 ++ LR+Y SL+ LIA+Y G+ DIVS HL DG +GEYN PY+ +LL G +YI+V+++ Sbjct: 97 GPYQSLRTYTSSLNGLIALYKGQCDIVSVHLFDGQTGEYNRPYVEKLLTGHTYIMVNLMR 156 Query: 181 RSAGFYVQKGNPQGIRSWSDLKQSGIRIINRERGAGARVLLDEQLRLHGIPASQISGYAV 240 R GFYVQKGNP+GI++WSDL +S + I+NRE+GAGARVLLDEQLRLHG+ S I GY Sbjct: 157 RPIGFYVQKGNPRGIQTWSDLGRSDVVIVNREKGAGARVLLDEQLRLHGLSPSAIRGYER 216 Query: 241 EENSHLAIAGRVARGEADVGIGTEKAAKIIDGVDFIPLIQERYDLVMLKKPGHETLIRTV 300 EE SHL++A VA G ADVGIGTEK A++ GV+FIPL++E+YD+VML+ +E LI V Sbjct: 217 EETSHLSVASAVAAGLADVGIGTEKVARMA-GVEFIPLMKEQYDVVMLRTRENEPLIAAV 275 Query: 301 LDILRSAAFQNELSSIHGYDLSETGTVIYE 330 L++LRS +F+ EL ++ GYD+S+TG +I E Sbjct: 276 LNVLRSDSFRTELEALGGYDVSQTGQIIAE 305 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.377 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,847,805,562 Number of extensions: 74622378 Number of successful extensions: 188475 Number of sequences better than 1.0e-05: 425 Number of HSP's gapped: 187852 Number of HSP's successfully gapped: 442 Length of query: 331 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 195 Effective length of database: 1,779,438,163 Effective search space: 346990441785 Effective search space used: 346990441785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)