BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0005.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C5DAF1.1 C5DAF1_9BACI Polysaccharide deacetylase family sporulat... 246 1e-63 B3KGD5.1 B3KGD5_9BACI Polysaccharide deacetylase family sporulat... 243 8e-63 B1D9E8.1 B1D9E8_9BACL Polysaccharide deacetylase 241 6e-62 C0ZKZ1.1 C0ZKZ1_BREBN Putative uncharacterized protein 237 8e-61 A7GQV7.1 A7GQV7_BACCN Sporulation polysaccharide deacetylase PdaB 206 2e-51 >C5DAF1.1 C5DAF1_9BACI Polysaccharide deacetylase family sporulation protein PdaB Length = 251 Score = 246 bits (628), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/214 (54%), Positives = 151/214 (70%), Gaps = 1/214 (0%) Query: 27 NVKDRNYYEQRGEMIWEVPTTQKVIALTFDDGPDPSETDQILDVLQQYNAKCTFFAIGKR 86 N K R+Y+E++G IWEV T +KVIALTFDDGP P+ T QILDVL+QY AK TFF +G R Sbjct: 27 NHKGRSYFEEQGRAIWEVRTKEKVIALTFDDGPSPTYTPQILDVLKQYQAKATFFVVGSR 86 Query: 87 IAAYPDVARRVITEGHELANHTYNHVYFKKPVSXXXXXXXXXXXXXXXXXVSGRHSSLFR 146 + +PD+ +R I EGHELANHTYNH F+ ++ ++G FR Sbjct: 87 VKDHPDLVKRQILEGHELANHTYNHANFRG-LTEEEIRQELRKTKQLIVELTGFSPKFFR 145 Query: 147 PPGGMYDETLVDVSNSMGLKPVLWSWHQDTRDWNRPGVYSISSRVIRNARNGDIVLFHDH 206 PPGG Y+ET+++V+N G V+WSWHQDT DW +PGV I +V+ NARNGDIVLFHD+ Sbjct: 146 PPGGYYNETIINVANQEGYTVVMWSWHQDTYDWKQPGVSKIVKKVLSNARNGDIVLFHDY 205 Query: 207 VHGQSQTREALKIILPELQKRGFRFVTVSELIRL 240 + QT EALK ILPEL+KRG++FVT+SEL+++ Sbjct: 206 GGDRRQTIEALKQILPELKKRGYKFVTISELLKM 239 >B3KGD5.1 B3KGD5_9BACI Polysaccharide deacetylase family sporulation protein PdaB Length = 256 Score = 243 bits (621), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 114/210 (54%), Positives = 144/210 (68%), Gaps = 1/210 (0%) Query: 29 KDRNYYEQRGEMIWEVPTTQKVIALTFDDGPDPSETDQILDVLQQYNAKCTFFAIGKRIA 88 K R+YYE+RGE++WEVPT KVIALTFDDGPD T QILD+L++Y+AK TFF +G R+ Sbjct: 34 KGRDYYEERGEIVWEVPTQNKVIALTFDDGPDEHNTVQILDLLKRYDAKATFFVVGSRVE 93 Query: 89 AYPDVARRVITEGHELANHTYNHVYFKKPVSXXXXXXXXXXXXXXXXXVSGRHSSLFRPP 148 +PD+ R + EGHE+ NH+Y H F ++ +G + LFRPP Sbjct: 94 KHPDIVARELQEGHEIGNHSYTHPPFHN-INVTKLSSELNQTQDAIYQATGMKTVLFRPP 152 Query: 149 GGMYDETLVDVSNSMGLKPVLWSWHQDTRDWNRPGVYSISSRVIRNARNGDIVLFHDHVH 208 GG Y+E +V S +G+ VLWSWHQDT DW +PGV I +V+ NARNGDIVL HD V Sbjct: 153 GGSYNEAIVSTSKDLGMLTVLWSWHQDTLDWRKPGVNRIVRKVLDNARNGDIVLMHDFVP 212 Query: 209 GQSQTREALKIILPELQKRGFRFVTVSELI 238 +QT EALK+ILPELQKRG+ FVTVSEL+ Sbjct: 213 SSTQTVEALKVILPELQKRGYSFVTVSELM 242 >B1D9E8.1 B1D9E8_9BACL Polysaccharide deacetylase Length = 242 Score = 241 bits (614), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 113/215 (52%), Positives = 146/215 (67%), Gaps = 1/215 (0%) Query: 29 KDRNYYEQRGEMIWEVPTTQKVIALTFDDGPDPSETDQILDVLQQYNAKCTFFAIGKRIA 88 KDR YYE+RGE+IWEVP K IALTFDDGP P T+ ILD+L++Y+AK TFF +G R+ Sbjct: 24 KDRAYYEKRGEIIWEVPGENKRIALTFDDGPYPDTTEPILDLLKEYHAKATFFVVGNRVE 83 Query: 89 AYPDVARRVITEGHELANHTYNHVYFKKPVSXXXXXXXXXXXXXXXXXVSGRHSSLFRPP 148 +P+ +R I EGHE+ANHT+NH YF + + V+G+ LFRPP Sbjct: 84 NFPETIKREIAEGHEVANHTFNH-YFLQKKNYATVQNEIMKTEQALEKVTGKKPLLFRPP 142 Query: 149 GGMYDETLVDVSNSMGLKPVLWSWHQDTRDWNRPGVYSISSRVIRNARNGDIVLFHDHVH 208 GG Y++ ++ ++ G VLWSWHQDT DW PGV I ++V+ NARNGDI+L HD+V Sbjct: 143 GGFYNDQMLAIAKKNGYTTVLWSWHQDTNDWRSPGVQKIVNKVLNNARNGDIILLHDYVP 202 Query: 209 GQSQTREALKIILPELQKRGFRFVTVSELIRLSDA 243 QT EALKIILPELQ+RG+ VTVS+LI D+ Sbjct: 203 RSVQTVEALKIILPELQRRGYEMVTVSDLINNRDS 237 >C0ZKZ1.1 C0ZKZ1_BREBN Putative uncharacterized protein Length = 250 Score = 237 bits (604), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 110/211 (52%), Positives = 146/211 (69%), Gaps = 1/211 (0%) Query: 29 KDRNYYEQRGEMIWEVPTTQKVIALTFDDGPDPSETDQILDVLQQYNAKCTFFAIGKRIA 88 K+R YYE RG+++WEVPT KVIALTFDDGPD T QI +L+QY AK TFF +G R++ Sbjct: 30 KNREYYETRGDIVWEVPTESKVIALTFDDGPDQVYTPQIAALLKQYQAKSTFFVVGNRVS 89 Query: 89 AYPDVARRVITEGHELANHTYNHVYFKKPVSXXXXXXXXXXXXXXXXXVSGRHSSLFRPP 148 YP++ + + + HE+ANHTY+H +K +S +G +LFRPP Sbjct: 90 EYPEIVKSLANDQHEIANHTYSHPDIRK-LSAKRLLEEVQKTQETIYSATGVRPTLFRPP 148 Query: 149 GGMYDETLVDVSNSMGLKPVLWSWHQDTRDWNRPGVYSISSRVIRNARNGDIVLFHDHVH 208 GG YDET+VD + G ++WSWHQDTRDW+ PGV I ++V+ NARNGDIVLFHD+ Sbjct: 149 GGYYDETVVDTAKQAGFLVIMWSWHQDTRDWSDPGVKKIVNKVLNNARNGDIVLFHDYGG 208 Query: 209 GQSQTREALKIILPELQKRGFRFVTVSELIR 239 + QT +AL+ ILPEL+ RG++FVTVSEL+R Sbjct: 209 NRRQTVQALEQILPELKNRGYKFVTVSELLR 239 >A7GQV7.1 A7GQV7_BACCN Sporulation polysaccharide deacetylase PdaB Length = 241 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/209 (48%), Positives = 133/209 (63%), Gaps = 2/209 (0%) Query: 31 RNYYEQRGEMIWEVPTTQKVIALTFDDGPDPSETDQILDVLQQYNAKCTFFAIGKRIAAY 90 R E G + WEVP +K+IA+TFDDGPDP T Q+L +L+QY A+ TFF IG RI Sbjct: 32 RKELEPTGYVTWEVPNKEKIIAITFDDGPDPIYTPQVLQLLRQYKAEATFFMIGFRIQRN 91 Query: 91 PDVARRVITEGHELANHTYNHVYFKKPVSXXXXXXXXXXXXXXXXXVSGRHSSLFRPPGG 150 P + ++V+ EGHE+ NHT NH+Y K+ S + + LFRPPGG Sbjct: 92 PYLVKQVLKEGHEIGNHTMNHLYAKRTQSEKVKNDILEGKKYLAKWI--KEPLLFRPPGG 149 Query: 151 MYDETLVDVSNSMGLKPVLWSWHQDTRDWNRPGVYSISSRVIRNARNGDIVLFHDHVHGQ 210 ++T+ + G + VLWSWHQD RDW PG SI + V++NA++GDIVL HD + Sbjct: 150 EINDTVFTTAKEAGYQIVLWSWHQDPRDWANPGTASIVNHVLKNAKSGDIVLLHDGGSDR 209 Query: 211 SQTREALKIILPELQKRGFRFVTVSELIR 239 SQT EAL ILPELQ+RG+RFV VSEL+R Sbjct: 210 SQTIEALAKILPELQQRGYRFVKVSELLR 238 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,391,894,309 Number of extensions: 52170616 Number of successful extensions: 112983 Number of sequences better than 1.0e-05: 2368 Number of HSP's gapped: 109278 Number of HSP's successfully gapped: 2380 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)