BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0153.0001.p (183 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KF58.1 B3KF58_9BACI Bifunctional deaminase-reductase domain pr... 349 6e-95 Q1DBC6.1 Q1DBC6_MYXXD RibD domain protein 165 2e-39 Q08TK7.1 Q08TK7_STIAU Riboflavin biosynthesis protein RibD C-ter... 164 2e-39 A8KZH4.1 A8KZH4_FRASN Bifunctional deaminase-reductase domain pr... 161 2e-38 B4UMU1.1 B4UMU1_ANASK Bifunctional deaminase-reductase domain pr... 156 7e-37 >B3KF58.1 B3KF58_9BACI Bifunctional deaminase-reductase domain protein Length = 183 Score = 349 bits (896), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 167/183 (91%), Positives = 177/183 (96%) Query: 1 MGQVILMMNVTLDGCCDHTQVIADEELHQYTVDLMDQSAGLLFGRKIYQLMESAWPAIAS 60 MG++ILMMNVTLDGCCDHTQVIADE+LHQYT+DLMD+S GLLFGR+IYQLMESAWP+IAS Sbjct: 1 MGRIILMMNVTLDGCCDHTQVIADEDLHQYTMDLMDESDGLLFGREIYQLMESAWPSIAS 60 Query: 61 SGDGPQFMVDFARKLDRKPKYVFSRTLDHVSWQNSFLLKGPVSEEVPRLTAEGKNLVVNG 120 SGDGPQF+VDFARKLDRKPKYVFSRTLDHVSWQNSFLLKGPVSEEVPRL AEGKNLVVNG Sbjct: 61 SGDGPQFLVDFARKLDRKPKYVFSRTLDHVSWQNSFLLKGPVSEEVPRLMAEGKNLVVNG 120 Query: 121 GPGLGSTLAQLGLVDEYHFLVQPIVAGRGPRLLGGVLDRLNLKLAETRPFGSGVVVLRYT 180 GPGLGSTLAQLGLVDEYHFLVQPIVAG GP+LLGGV DRLNLKL ET+PFGSGVVVL YT Sbjct: 121 GPGLGSTLAQLGLVDEYHFLVQPIVAGHGPQLLGGVRDRLNLKLTETKPFGSGVVVLHYT 180 Query: 181 PVR 183 PVR Sbjct: 181 PVR 183 >Q1DBC6.1 Q1DBC6_MYXXD RibD domain protein Length = 184 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 112/179 (62%) Query: 1 MGQVILMMNVTLDGCCDHTQVIADEELHQYTVDLMDQSAGLLFGRKIYQLMESAWPAIAS 60 MG + +NVTLDGC DHTQ I D+ELH Y LM+QS +LFGR Y+LME AWPA+A Sbjct: 1 MGLLTFGLNVTLDGCIDHTQGIVDDELHDYWRQLMEQSGAMLFGRNTYELMEGAWPAVAR 60 Query: 61 SGDGPQFMVDFARKLDRKPKYVFSRTLDHVSWQNSFLLKGPVSEEVPRLTAEGKNLVVNG 120 P+ M ++A+KL+ K KYV S + WQN+ ++G + E + L A+ + V+ G Sbjct: 61 DEKAPRAMREWAQKLEAKAKYVVSGSRSDFPWQNTIKVEGDLREAISALKAKTERGVLVG 120 Query: 121 GPGLGSTLAQLGLVDEYHFLVQPIVAGRGPRLLGGVLDRLNLKLAETRPFGSGVVVLRY 179 P L + L +LGL+DEY +V PI++G GP L G+ +L+L T+ F SGV L + Sbjct: 121 APKLAAALEELGLIDEYRIVVHPIISGSGPTLFHGLSSARHLELLSTQRFKSGVQALHF 179 >Q08TK7.1 Q08TK7_STIAU Riboflavin biosynthesis protein RibD C-terminal domain protein Length = 184 Score = 164 bits (416), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 81/179 (45%), Positives = 113/179 (63%) Query: 1 MGQVILMMNVTLDGCCDHTQVIADEELHQYTVDLMDQSAGLLFGRKIYQLMESAWPAIAS 60 MG + +NVTLDGC DHTQ IAD+ELH Y LM+QS +LFGR Y+LME AWPA+A Sbjct: 1 MGLLTFGLNVTLDGCIDHTQGIADDELHDYWRLLMEQSGAMLFGRNTYELMEGAWPAVAR 60 Query: 61 SGDGPQFMVDFARKLDRKPKYVFSRTLDHVSWQNSFLLKGPVSEEVPRLTAEGKNLVVNG 120 P+ M ++A+KL+ K KYV S + WQN+ ++G + E + L A+ + V+ G Sbjct: 61 DEKAPRAMREWAQKLEAKAKYVVSGSRSDFPWQNTIKVEGDLREAISALKAKTERGVLVG 120 Query: 121 GPGLGSTLAQLGLVDEYHFLVQPIVAGRGPRLLGGVLDRLNLKLAETRPFGSGVVVLRY 179 P L + L + GL+DEY +V PI++GRGP L G+ +L+L T+ F SGV L + Sbjct: 121 APKLAAALEEWGLIDEYRIVVHPIISGRGPTLFHGLSSARHLELLLTQRFKSGVQALHF 179 >A8KZH4.1 A8KZH4_FRASN Bifunctional deaminase-reductase domain protein Length = 188 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/180 (47%), Positives = 114/180 (63%), Gaps = 6/180 (3%) Query: 8 MNVTLDGCCDHTQVIADEELHQYTVDLMDQSAGLLFGRKIYQLMESAWPAIASSGDGPQF 67 +NVTLDGCCDH VI DEELH++ ++++ LLFGR YQ+ME AW +++G P + Sbjct: 8 INVTLDGCCDHRAVIPDEELHRHHAANLERADALLFGRVTYQMMEEAWRQ-SATGTWPDW 66 Query: 68 M----VDFARKLDRKPKYVFSRTLDHVSWQNSFLLKGPVSEEVPRLTAEGKNLVVNGGPG 123 M + FA+ +DR KYV S TLD V W N+ L++G + + V +L E + GG Sbjct: 67 MAGWMIPFAQTIDRAKKYVVSSTLDRVDW-NAELVQGDLGKAVEQLKQEPGGALAVGGVT 125 Query: 124 LGSTLAQLGLVDEYHFLVQPIVAGRGPRLLGGVLDRLNLKLAETRPFGSGVVVLRYTPVR 183 L LA LGL+DEY F+VQP+VAG GP L G+ +RL LKL + F SG V LRY P R Sbjct: 126 LPLALADLGLIDEYEFVVQPVVAGHGPTLFAGLSERLELKLVGRQEFRSGAVALRYEPSR 185 >B4UMU1.1 B4UMU1_ANASK Bifunctional deaminase-reductase domain protein Length = 182 Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 78/179 (43%), Positives = 104/179 (58%) Query: 1 MGQVILMMNVTLDGCCDHTQVIADEELHQYTVDLMDQSAGLLFGRKIYQLMESAWPAIAS 60 MG + +NVTLDGCCDH + IAD+E+ +Y MD + +LFGR+ Y+LME AWP +A Sbjct: 1 MGLLTFALNVTLDGCCDHREGIADDEMLRYWTRRMDAAGAMLFGRRTYELMEDAWPQVAR 60 Query: 61 SGDGPQFMVDFARKLDRKPKYVFSRTLDHVSWQNSFLLKGPVSEEVPRLTAEGKNLVVNG 120 +ARKL+ KPKYV S T W N+ L++G ++ V L ++ G Sbjct: 61 DPKARPADRTWARKLEAKPKYVVSTTRRDFPWSNTHLVEGDLTRAVKALKKATPRGILVG 120 Query: 121 GPGLGSTLAQLGLVDEYHFLVQPIVAGRGPRLLGGVLDRLNLKLAETRPFGSGVVVLRY 179 P L + L +LGLVDEY +V P+VAG GP L G+ L LKL R SG+V L Y Sbjct: 121 SPQLSAALQRLGLVDEYRLVVHPVVAGHGPYLFTGLQPSLRLKLVSARRLKSGIVTLHY 179 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,139,756,845 Number of extensions: 48627040 Number of successful extensions: 115781 Number of sequences better than 1.0e-05: 354 Number of HSP's gapped: 115360 Number of HSP's successfully gapped: 354 Length of query: 183 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 56 Effective length of database: 1,864,227,298 Effective search space: 104396728688 Effective search space used: 104396728688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)