BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0151.0010.p (187 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KJL5.1 Q9KJL5_TRIEI Putative uncharacterized protein 77 7e-13 Q2JTK4.1 Q2JTK4_SYNJA Putative uncharacterized protein 73 1e-11 Q2JP91.1 Q2JP91_SYNJB Putative uncharacterized protein 72 3e-11 Q7X1A9.1 Q7X1A9_9BACT NifX-associated protein 71 4e-11 B4AZ98.1 B4AZ98_9CHRO Nitrogen fixation protein 70 1e-10 >Q9KJL5.1 Q9KJL5_TRIEI Putative uncharacterized protein Length = 156 Score = 77.0 bits (188), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 76/137 (55%), Gaps = 1/137 (0%) Query: 40 FVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKVRQQVPILFQ 99 F++ L + D +G + S SP E I K ++ S ++K + + V+P ++ + + Sbjct: 18 FIKELIRSIQAQDSYGVYKSWSP-ELILKPYIVSKQEKRQISTDEEVNPMTLARIKLFYN 76 Query: 100 AIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFTSEEKTIRYG 159 AIA +E ++ ++Q IN EGFG L++ GR+++V ++LR F FTS EK G Sbjct: 77 AIATSIELETNEIMQVVVNINHEGFGWALVFCGRLLVVARTLRDAQRFGFTSLEKMEDEG 136 Query: 160 VECVEEGLAFLEKYKEM 176 + + G+ +KYKE+ Sbjct: 137 EKMAKAGIELAKKYKEV 153 >Q2JTK4.1 Q2JTK4_SYNJA Putative uncharacterized protein Length = 151 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 75/141 (53%), Gaps = 1/141 (0%) Query: 36 TADAFVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKVRQQVP 95 + ++ + L AD +G + + S E + K F+ + K + V P VR ++ Sbjct: 9 STSPILQEIVRQLRAADPYGTYRAWS-DELLLKPFVVTKAQKRQISLEGEVDPGVRSRIL 67 Query: 96 ILFQAIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFTSEEKT 155 I ++AIA ++E+++G + Q ++N EGFG L+++GR++LV+ +LR F F S E+ Sbjct: 68 IYYRAIAALIEKETGLLAQVVLDLNSEGFGWVLVFSGRLLLVVNTLRDAHRFGFESLEQL 127 Query: 156 IRYGVECVEEGLAFLEKYKEM 176 +++G+ Y E+ Sbjct: 128 TEKATALIDKGIQLARTYPEV 148 >Q2JP91.1 Q2JP91_SYNJB Putative uncharacterized protein Length = 151 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 70/126 (55%), Gaps = 1/126 (0%) Query: 51 ADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKVRQQVPILFQAIAGVMEEKSG 110 AD +G + + S E + K F+ + K + V P VR ++ I ++AIA ++E+++G Sbjct: 24 ADPYGTYRAWS-DELLLKPFVVTKAQKRQISLEGEVDPGVRSRILIYYRAIAALIEKETG 82 Query: 111 AMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFTSEEKTIRYGVECVEEGLAFL 170 + Q ++N EGFG L+++GR++LV+ +LR F F S E+ +++G+ Sbjct: 83 LLAQVVLDLNSEGFGWVLVFSGRLLLVVNTLRDAHRFGFDSLEQLSEKATALIDKGIQLA 142 Query: 171 EKYKEM 176 Y E+ Sbjct: 143 RTYPEV 148 >Q7X1A9.1 Q7X1A9_9BACT NifX-associated protein Length = 167 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 1/145 (0%) Query: 31 ELDQGTADAFVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKV 90 E Q +D F + L + D FG L+ E++ K F+ AE + P + Sbjct: 19 ESTQTASDQFFKDLALQFRSHDGFGAWDKLT-DEQVLKPFILDAEARRAIPIIGDPDPDI 77 Query: 91 RQQVPILFQAIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFT 150 ++ I + +A +E+++G MV +++ EGFGR +L GR+++V K+LR F F Sbjct: 78 LWRLEIFYNTVALSIEKRTGVMVTPMMKMSHEGFGRMVLIGGRLVVVNKNLRDVHRFGFA 137 Query: 151 SEEKTIRYGVECVEEGLAFLEKYKE 175 S EK + + + +G+ +EK+KE Sbjct: 138 SREKLLEEAEKLISQGVEMIEKFKE 162 >B4AZ98.1 B4AZ98_9CHRO Nitrogen fixation protein Length = 159 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 77/139 (55%), Gaps = 1/139 (0%) Query: 38 DAFVRRLCNLLDTADFFGRHASLSPQEKIAKLFLASAEDKNKSDFNCAVSPKVRQQVPIL 97 +AF++ L + D +G + + +A F+ S + K + N V P + ++ Sbjct: 19 NAFLKELAQQIRAQDHYGVFRTWEDRLVLAN-FIVSKKRKREIPVNGDVDPATQLRILSF 77 Query: 98 FQAIAGVMEEKSGAMVQSTAEINVEGFGRGLLYTGRVILVLKSLRAGAPFPFTSEEKTIR 157 ++AIA +E+++G + Q +I+ EGFG L+++GR+++V +++R F F S EK Sbjct: 78 YRAIAASIEKETGKLCQVVLDISHEGFGWSLIWSGRLMVVCRTVRDAHRFGFESLEKLAA 137 Query: 158 YGVECVEEGLAFLEKYKEM 176 G + VE G+ ++++ E+ Sbjct: 138 DGEKLVENGIELIQRFPEV 156 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,035,200,810 Number of extensions: 39159850 Number of successful extensions: 81502 Number of sequences better than 1.0e-05: 59 Number of HSP's gapped: 81504 Number of HSP's successfully gapped: 59 Length of query: 187 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 59 Effective length of database: 1,854,806,283 Effective search space: 109433570697 Effective search space used: 109433570697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)