BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0151.0006.p (519 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9X244.1 B9X244_9BACL Dinitogenase beta subunit 1004 0.0 B9X2C1.1 B9X2C1_9BACL Dinitrogenase beta subunit 886 0.0 B9X2A2.1 B9X2A2_9BACL Dinitrogenase beta subunit (Fragment) 702 0.0 Q56JU3.1 Q56JU3_9BACL Dinitrogenase beta subunit 659 0.0 Q7WTA6.1 Q7WTA6_PAEAZ Dinitrogenase beta subunit (Fragment) 654 0.0 >B9X244.1 B9X244_9BACL Dinitogenase beta subunit Length = 519 Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/519 (92%), Positives = 495/519 (95%) Query: 1 MSRDRLEIPDYNSLFSEERYVQQRANKKQFEAPCSEQDTAEALAYSKSAEYMQKNFDRKA 60 MS+DR+EIPDYNSLFSEERYVQQRANKKQFEAPCSEQDTAEALAYSKSAEYMQKNFDRKA Sbjct: 1 MSKDRMEIPDYNSLFSEERYVQQRANKKQFEAPCSEQDTAEALAYSKSAEYMQKNFDRKA 60 Query: 61 VVINPHKACQPLGSVMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTED 120 VVINPHKACQPLGSVMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTED Sbjct: 61 VVINPHKACQPLGSVMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTED 120 Query: 121 AAVFGGMNNLIDGLENSIALYKPEMIALCTTCMAEVIGDDLSSFIGNARIKGAITEDFPV 180 AAVFGGMNNLIDGLENSIALYKPEMIALCTTCMAEVIGDDLSSFIGNARIKGAITEDFPV Sbjct: 121 AAVFGGMNNLIDGLENSIALYKPEMIALCTTCMAEVIGDDLSSFIGNARIKGAITEDFPV 180 Query: 181 AFCNTPSFVGSHITGYDSMLKGILSYLYERSGVQANPGSGEEAGEKLNVMLGFEPYTGNF 240 AFCNTPSFVGSHITGYDSMLKGILSYLYERSG++A+PGSG E+GEKLNVMLGFEPYTGNF Sbjct: 181 AFCNTPSFVGSHITGYDSMLKGILSYLYERSGMKASPGSGAESGEKLNVMLGFEPYTGNF 240 Query: 241 AEIRKILEAFDTKYTLLGDHSGNYDSPATXXXXXXXXXTKLADVPLAANALGTLSLQKYT 300 AE+RKIL+AFDTKYT+LGDHSGNYDSPAT TKLADVPLAANALGTLSLQKYT Sbjct: 241 AELRKILDAFDTKYTILGDHSGNYDSPATGEYEYYYGGTKLADVPLAANALGTLSLQKYT 300 Query: 301 LKKTQDFISGTWNQQLTALSTPLGITGTDKLLDAVSELTGLPVPASLMEERGRVVDALTD 360 LKKTQDFIS TWNQQLTA+STPLGITGTDKLLDA+SELTGLP+PASLMEERGRVVDALTD Sbjct: 301 LKKTQDFISSTWNQQLTAMSTPLGITGTDKLLDAISELTGLPIPASLMEERGRVVDALTD 360 Query: 361 SHPYLHGKRVALVGDPDLLIGLIGFCLEIGMEPVHIVCSNGDVDFNEVKFKDEAEALLAS 420 SHPYLHGKRVALVGDPDLLIGLIGFCLEIGMEPVHIVCSNGDVDFNEVKFKDEAEALLAS Sbjct: 361 SHPYLHGKRVALVGDPDLLIGLIGFCLEIGMEPVHIVCSNGDVDFNEVKFKDEAEALLAS 420 Query: 421 SPYGSEAALYIGNDLWHMRSLLINDPVDLAIGSSHLKFAAKDAGVPLVRVGFPILDRHHM 480 SPYGSEAALYIGNDLWHMRSLL+NDPVDLAIGSSHLKFAAKDAGVPLVRVGFPILDRHHM Sbjct: 421 SPYGSEAALYIGNDLWHMRSLLMNDPVDLAIGSSHLKFAAKDAGVPLVRVGFPILDRHHM 480 Query: 481 HRYPIIGYQGXXXXXXXXXXXXXDELDRNNSGFNYDLVR 519 HRYPIIGYQG DELDRNNSGFNYDLVR Sbjct: 481 HRYPIIGYQGTLNLLSLLVNTILDELDRNNSGFNYDLVR 519 >B9X2C1.1 B9X2C1_9BACL Dinitrogenase beta subunit Length = 505 Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/489 (84%), Positives = 454/489 (92%) Query: 2 SRDRLEIPDYNSLFSEERYVQQRANKKQFEAPCSEQDTAEALAYSKSAEYMQKNFDRKAV 61 + +L IPD+NSLFSEER++QQR NKKQFEAPCS Q+T EALAYS+SAEY++KNFDRK V Sbjct: 3 TEKKLNIPDHNSLFSEERFIQQRENKKQFEAPCSVQETEEALAYSRSAEYLEKNFDRKXV 62 Query: 62 VINPHKACQPLGSVMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTEDA 121 VINPHKACQPLGS+MAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTEDA Sbjct: 63 VINPHKACQPLGSMMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTEDA 122 Query: 122 AVFGGMNNLIDGLENSIALYKPEMIALCTTCMAEVIGDDLSSFIGNARIKGAITEDFPVA 181 AVFGGM+NLIDGLENS+ALYKPEMIALCTTCMAEVIGDDLSSFIGNAR KGAI +DFPVA Sbjct: 123 AVFGGMSNLIDGLENSVALYKPEMIALCTTCMAEVIGDDLSSFIGNARQKGAIADDFPVA 182 Query: 182 FCNTPSFVGSHITGYDSMLKGILSYLYERSGVQANPGSGEEAGEKLNVMLGFEPYTGNFA 241 FCNTPSFVGSHITGYD+M+KGILSYLY+RSG+ A PGSGE +GEKLNVMLGFEPYTGNFA Sbjct: 183 FCNTPSFVGSHITGYDAMIKGILSYLYDRSGINAAPGSGEGSGEKLNVMLGFEPYTGNFA 242 Query: 242 EIRKILEAFDTKYTLLGDHSGNYDSPATXXXXXXXXXTKLADVPLAANALGTLSLQKYTL 301 EI+KIL AFDT+YT+LGDHSGN+DSPAT TKLADVPLAANALGTLSLQKYTL Sbjct: 243 EIKKILAAFDTQYTILGDHSGNFDSPATGEYEYYYGGTKLADVPLAANALGTLSLQKYTL 302 Query: 302 KKTQDFISGTWNQQLTALSTPLGITGTDKLLDAVSELTGLPVPASLMEERGRVVDALTDS 361 KKTQD+IS +W QQ+T+LSTPLGI GTD+LL+A+SELTGLPVPASL EERGRV+DA+TDS Sbjct: 303 KKTQDYISQSWKQQVTSLSTPLGIAGTDQLLEAISELTGLPVPASLQEERGRVIDAITDS 362 Query: 362 HPYLHGKRVALVGDPDLLIGLIGFCLEIGMEPVHIVCSNGDVDFNEVKFKDEAEALLASS 421 H YLHGKRVALVGDPDLLIGLIGF +E+GMEP+HIVCSNGDVDFNEVKFKDEAEALLA+S Sbjct: 363 HAYLHGKRVALVGDPDLLIGLIGFVMELGMEPIHIVCSNGDVDFNEVKFKDEAEALLAAS 422 Query: 422 PYGSEAALYIGNDLWHMRSLLINDPVDLAIGSSHLKFAAKDAGVPLVRVGFPILDRHHMH 481 PYG+E +YIG DLWHMRSLLINDPVDLA+GSSHLKFAA DA VP++RVGFPI DRHHMH Sbjct: 423 PYGAEGKVYIGKDLWHMRSLLINDPVDLAVGSSHLKFAANDANVPMIRVGFPIFDRHHMH 482 Query: 482 RYPIIGYQG 490 RYPIIGY G Sbjct: 483 RYPIIGYSG 491 >B9X2A2.1 B9X2A2_9BACL Dinitrogenase beta subunit (Fragment) Length = 417 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/405 (80%), Positives = 369/405 (91%), Gaps = 1/405 (0%) Query: 1 MSRDRLEIPDYNSLFSEERYVQQRANKKQFEAPCSEQDTAEALAYSKSAEYMQKNFDRKA 60 MS+++L IPDYN+LF+EERYVQQR NKKQFEAPCS+Q EALAYSKSAEY++KNFDRKA Sbjct: 1 MSKEKLNIPDYNTLFTEERYVQQRENKKQFEAPCSDQAKEEALAYSKSAEYLEKNFDRKA 60 Query: 61 VVINPHKACQPLGSVMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTED 120 VVINPHKACQPLGSVMAALGFEKTLPFVHGS GCNSYFRS LSRHFKEPTPAVSSSMTED Sbjct: 61 VVINPHKACQPLGSVMAALGFEKTLPFVHGSLGCNSYFRSXLSRHFKEPTPAVSSSMTED 120 Query: 121 AAVFGGMNNLIDGLENSIALYKPEMIALCTTCMAEVIGDDLSSFIGNARIKGAITEDFPV 180 AAVFGGM+N+IDGL+N++ALYKPEM+A+CTTCMAEVIGDDL++FIGNAR KGAI EDFPV Sbjct: 121 AAVFGGMSNMIDGLQNAVALYKPEMVAVCTTCMAEVIGDDLTAFIGNARQKGAIAEDFPV 180 Query: 181 AFCNTPSFVGSHITGYDSMLKGILSYLYERSGVQANPGSGEEAGEKLNVMLGFEPYTGNF 240 + NTPSF+GSH+TGYD+M+K IL+ L++RSG+ A PG+GEE GEKLNV+LGFEPYTGNF Sbjct: 181 TYANTPSFIGSHVTGYDAMIKSILNQLFDRSGLTAAPGTGEE-GEKLNVLLGFEPYTGNF 239 Query: 241 AEIRKILEAFDTKYTLLGDHSGNYDSPATXXXXXXXXXTKLADVPLAANALGTLSLQKYT 300 AEIRKIL AFDTKYT+LGDHSGNYDSPAT TKLADVP AANALG+L LQKYT Sbjct: 240 AEIRKILNAFDTKYTILGDHSGNYDSPATGEYEYYYGGTKLADVPKAANALGSLVLQKYT 299 Query: 301 LKKTQDFISGTWNQQLTALSTPLGITGTDKLLDAVSELTGLPVPASLMEERGRVVDALTD 360 LKKTQ++ISGTW QQ+++LSTPLG+ TDKLL A+SELTGLPVPASL EERGRVVDA D Sbjct: 300 LKKTQEYISGTWKQQVSSLSTPLGVKATDKLLAAISELTGLPVPASLTEERGRVVDAYAD 359 Query: 361 SHPYLHGKRVALVGDPDLLIGLIGFCLEIGMEPVHIVCSNGDVDF 405 SHPYLHGKRVAL GDPDLL+GLIGFCLE+GMEPVHI+CSNGDV+F Sbjct: 360 SHPYLHGKRVALAGDPDLLLGLIGFCLEVGMEPVHILCSNGDVEF 404 >Q56JU3.1 Q56JU3_9BACL Dinitrogenase beta subunit Length = 481 Score = 659 bits (1699), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/464 (66%), Positives = 372/464 (80%), Gaps = 9/464 (1%) Query: 4 DRLEIPDYNSLFSEERYVQQRANKKQFEAPCSEQDTAEALAYSKSAEYMQKNFDRKAVVI 63 +RL IPD+N LF E++YV+QR K++FEAPCSEQ+ E L YS+S EY KNF R AVV+ Sbjct: 3 ERLHIPDHNKLFQEDKYVRQRERKREFEAPCSEQEVQETLEYSRSKEYKDKNFARSAVVV 62 Query: 64 NPHKACQPLGSVMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTEDAAV 123 NP KACQPLG++MAALGFEKTLPF+HGSQGC +YFRSHLSRHFKEP PAVS+SMTEDAAV Sbjct: 63 NPAKACQPLGAIMAALGFEKTLPFIHGSQGCTAYFRSHLSRHFKEPVPAVSTSMTEDAAV 122 Query: 124 FGGMNNLIDGLENSIALYKPEMIALCTTCMAEVIGDDLSSFIGNARIKGAITEDFPVAFC 183 FGGM+NLIDG+ENSIALYKP+MIA+CTTCMAEVIGDDLS+F+GNAR GA+ ED PV F Sbjct: 123 FGGMSNLIDGVENSIALYKPQMIAVCTTCMAEVIGDDLSAFLGNARQAGALPEDMPVPFA 182 Query: 184 NTPSFVGSHITGYDSMLKGILSYLYERSGVQANPGSGEEAGEKLNVMLGFEPYTGNFAEI 243 NTPSF GSHITGYD ML+ +L L+ +S A G+ K+NV+LGF+ YTGNFA I Sbjct: 183 NTPSFSGSHITGYDVMLRSVLETLFNQSTEVAQSGT----SGKVNVLLGFDSYTGNFAGI 238 Query: 244 RKILEAFDTKYTLLGDHSGNYDSPATXXXXXXXXXTKLADVPLAANALGTLSLQKYTLKK 303 ++IL F YT+LGDHS N+DS AT T LA+VP +ANA GTL+LQK++L+K Sbjct: 239 KRILAMFGADYTILGDHSSNFDSGATGEYTYYYGGTPLAEVPKSANAQGTLALQKFSLRK 298 Query: 304 TQDFISGTWNQQLTALSTPLGITGTDKLLDAVSELTGLPVPASLMEERGRVVDALTDSHP 363 + ++ TW QQ+ A+STPLGI TD LLD +S LTG VP L++ER RVVDA+TDSH Sbjct: 299 SLSYMKNTWGQQIVAMSTPLGIVATDDLLDEISRLTGRAVPEMLIQERARVVDAMTDSHA 358 Query: 364 YLHGKRVALVGDPDLLIGLIGFCLEIGMEPVHIVCSNGDVDFNEVKFKDEAEALLASSPY 423 YLHGKR+ALVGDPDLL+GLI FCLE+GMEPVHI+CSNGD KFK EAE LL SPY Sbjct: 359 YLHGKRLALVGDPDLLLGLITFCLELGMEPVHIICSNGD-----AKFKKEAEQLLQVSPY 413 Query: 424 GSEAALYIGNDLWHMRSLLINDPVDLAIGSSHLKFAAKDAGVPL 467 G+EA +++G DLWH+RSLL +DPVDLAIGSSH+K+AAK+AG+PL Sbjct: 414 GAEATVHVGQDLWHLRSLLFDDPVDLAIGSSHVKYAAKEAGIPL 457 >Q7WTA6.1 Q7WTA6_PAEAZ Dinitrogenase beta subunit (Fragment) Length = 387 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 308/375 (82%), Positives = 340/375 (90%), Gaps = 1/375 (0%) Query: 1 MSRDRLEIPDYNSLFSEERYVQQRANKKQFEAPCSEQDTAEALAYSKSAEYMQKNFDRKA 60 MS++R+ IPDYN+LF+EERYVQQR NKKQFEAPCS+Q+ AEALAYS+SAEYM+KNF+RKA Sbjct: 1 MSKERMNIPDYNTLFTEERYVQQRENKKQFEAPCSDQEKAEALAYSQSAEYMEKNFERKA 60 Query: 61 VVINPHKACQPLGSVMAALGFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTED 120 VVINPHKACQPLGSVMAAL FEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTED Sbjct: 61 VVINPHKACQPLGSVMAALIFEKTLPFVHGSQGCNSYFRSHLSRHFKEPTPAVSSSMTED 120 Query: 121 AAVFGGMNNLIDGLENSIALYKPEMIALCTTCMAEVIGDDLSSFIGNARIKGAITEDFPV 180 AAVFGGM+N+IDGLEN++ALYKPEM+A+CTTCMAEVIGDDLS+FIGNAR KGAI EDFPV Sbjct: 121 AAVFGGMSNMIDGLENAVALYKPEMVAVCTTCMAEVIGDDLSAFIGNARQKGAIAEDFPV 180 Query: 181 AFCNTPSFVGSHITGYDSMLKGILSYLYERSGVQANPGSGEEAGEKLNVMLGFEPYTGNF 240 F NTPSF+GSHITGYDSM+K ILS L++RSG A PG+GEE GEKLNV+LGFEPYTGNF Sbjct: 181 TFANTPSFIGSHITGYDSMIKSILSQLFDRSGQTAAPGAGEE-GEKLNVLLGFEPYTGNF 239 Query: 241 AEIRKILEAFDTKYTLLGDHSGNYDSPATXXXXXXXXXTKLADVPLAANALGTLSLQKYT 300 AEIRKIL AFDTKYT+LGDHSGNYDSPA TKLADVP AANALG+L LQKYT Sbjct: 240 AEIRKILNAFDTKYTILGDHSGNYDSPANGEYEYYYGGTKLADVPKAANALGSLVLQKYT 299 Query: 301 LKKTQDFISGTWNQQLTALSTPLGITGTDKLLDAVSELTGLPVPASLMEERGRVVDALTD 360 LKKTQ++I GTW QQ++ALSTPLG+ TDKLL+A+SELTGLPVPASL EERGRVVDA D Sbjct: 300 LKKTQEYIKGTWKQQVSALSTPLGVKATDKLLEAISELTGLPVPASLKEERGRVVDAYAD 359 Query: 361 SHPYLHGKRVALVGD 375 SHPYLHGKRVAL GD Sbjct: 360 SHPYLHGKRVALAGD 374 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,038,222,201 Number of extensions: 128223031 Number of successful extensions: 274751 Number of sequences better than 1.0e-05: 475 Number of HSP's gapped: 273701 Number of HSP's successfully gapped: 486 Length of query: 519 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 379 Effective length of database: 1,741,754,103 Effective search space: 660124805037 Effective search space used: 660124805037 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)