BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0151.0005.p (488 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9X243.1 B9X243_9BACL Nitrogenase protein alpha chain EC=1.18.6.1 990 0.0 B9X2C0.1 B9X2C0_9BACL Nitrogenase protein alpha chain EC=1.18.6.1 932 0.0 Q7WTA7.1 Q7WTA7_PAEAZ Nitrogenase protein alpha chain EC=1.18.6.1 917 0.0 B9X2A1.1 B9X2A1_9BACL Nitrogenase protein alpha chain EC=1.18.6.1 904 0.0 Q56JU4.1 Q56JU4_9BACL Nitrogenase protein alpha chain EC=1.18.6.1 771 0.0 >B9X243.1 B9X243_9BACL Nitrogenase protein alpha chain EC=1.18.6.1 Length = 485 Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust. Identities = 476/488 (97%), Positives = 483/488 (98%), Gaps = 3/488 (0%) Query: 1 MGLNIEENKKIVEEVLEAYPKKAKKDREKHFQINTEEAQSCGTCALKSNIKSRPGVMTPR 60 MGLNIEENKK+VEEVLEAYPKKAKKDREKHFQINTEEAQSCGTCALKSNIKSRPGVMTPR Sbjct: 1 MGLNIEENKKLVEEVLEAYPKKAKKDREKHFQINTEEAQSCGTCALKSNIKSRPGVMTPR 60 Query: 61 GCSFAGSKGVVWGPIKDMVHISHGPIGWGQXXXXSWGTRRNYANGTLGIDNFTAMQITSD 120 GCS+AGSKGVVWGPIKDMVHISHGPIG GQ SWGTRRNYANGTLGIDNFTAMQITSD Sbjct: 61 GCSYAGSKGVVWGPIKDMVHISHGPIGCGQY---SWGTRRNYANGTLGIDNFTAMQITSD 117 Query: 121 FQETDIVFGGDKKLEVIIREITEMFPLAKGISVQSECPVGLIGDDIEAVSKKMAKELDMP 180 FQETDIVFGGDKKLEVI+REITEMFPLAKGI+VQSECPVGLIGDDIEAVSKKMAKELDMP Sbjct: 118 FQETDIVFGGDKKLEVIMREITEMFPLAKGITVQSECPVGLIGDDIEAVSKKMAKELDMP 177 Query: 181 IVPVRCEGFRGVSQSLGHHIANDAIRDFVLGKAELAETGPYDVNIIGDYNIGGDAWASRI 240 IVPVRCEGFRGVSQSLGHHIANDAIRDFVLGKAELAETGPYDVNIIGDYNIGGDAWASRI Sbjct: 178 IVPVRCEGFRGVSQSLGHHIANDAIRDFVLGKAELAETGPYDVNIIGDYNIGGDAWASRI 237 Query: 241 LLEEMGLRVIAQWSGDGTLNELEIAHKAKLNLIHCHRSMNYMVEHMEKAYDIPWMEYNFF 300 LLEEMGLRVIAQWSGDGTLNELEIAHKAKLNLIHCHRSMNYMV+HMEKAYDIPWMEYNFF Sbjct: 238 LLEEMGLRVIAQWSGDGTLNELEIAHKAKLNLIHCHRSMNYMVDHMEKAYDIPWMEYNFF 297 Query: 301 GPSKTYESLRAIAARFDATIQQNCEKMIAKHKPAMDAIINKYKPRLENKKVLLMIGGLRS 360 GPSKTYESLRAIAARFDATIQ+NCEKMIAKHKPAMDAIINKYKPRLENKKVLLMIGGLRS Sbjct: 298 GPSKTYESLRAIAARFDATIQENCEKMIAKHKPAMDAIINKYKPRLENKKVLLMIGGLRS 357 Query: 361 RHTIGAYEDLGMDIVASGYEFAHKDDYEKTFPMMKEGTIIMDDPTAYELEELAQKLNVDL 420 RHTIGAYEDLGMDIVASGYEFAHKDDYE+TFPMMKEGTIIMDDPTAYELEELAQKLNVDL Sbjct: 358 RHTIGAYEDLGMDIVASGYEFAHKDDYERTFPMMKEGTIIMDDPTAYELEELAQKLNVDL 417 Query: 421 VGSGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNSPVWNLIRKKEK 480 VGSGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNSPVWNLIRKKEK Sbjct: 418 VGSGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNSPVWNLIRKKEK 477 Query: 481 AQKEGAGV 488 AQKEGAGV Sbjct: 478 AQKEGAGV 485 >B9X2C0.1 B9X2C0_9BACL Nitrogenase protein alpha chain EC=1.18.6.1 Length = 485 Score = 932 bits (2408), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/488 (90%), Positives = 466/488 (95%), Gaps = 3/488 (0%) Query: 1 MGLNIEENKKIVEEVLEAYPKKAKKDREKHFQINTEEAQSCGTCALKSNIKSRPGVMTPR 60 MGL+IE NKK+VEE+LE YPKKA+KDREKH+QINTEE+++CGTC LKSNIKSRPGVMTPR Sbjct: 1 MGLDIEANKKLVEELLEIYPKKARKDREKHYQINTEESKTCGTCGLKSNIKSRPGVMTPR 60 Query: 61 GCSFAGSKGVVWGPIKDMVHISHGPIGWGQXXXXSWGTRRNYANGTLGIDNFTAMQITSD 120 GCS+AGSKGVVWGPIKDMVHISHGPIG GQ SWGTRRNYANGTLGIDNFTAMQ+TSD Sbjct: 61 GCSYAGSKGVVWGPIKDMVHISHGPIGCGQY---SWGTRRNYANGTLGIDNFTAMQVTSD 117 Query: 121 FQETDIVFGGDKKLEVIIREITEMFPLAKGISVQSECPVGLIGDDIEAVSKKMAKELDMP 180 FQETDIVFGGDKKLEVI+REITEMFPLAKGISVQSECPVGLIGDDIEAVSKKMAKELDMP Sbjct: 118 FQETDIVFGGDKKLEVIMREITEMFPLAKGISVQSECPVGLIGDDIEAVSKKMAKELDMP 177 Query: 181 IVPVRCEGFRGVSQSLGHHIANDAIRDFVLGKAELAETGPYDVNIIGDYNIGGDAWASRI 240 IVPVRCEGFRGVSQSLGHHIANDAIRDFVLG+AELAETGPYDVNIIGDYNIGGDAWASRI Sbjct: 178 IVPVRCEGFRGVSQSLGHHIANDAIRDFVLGRAELAETGPYDVNIIGDYNIGGDAWASRI 237 Query: 241 LLEEMGLRVIAQWSGDGTLNELEIAHKAKLNLIHCHRSMNYMVEHMEKAYDIPWMEYNFF 300 LLEEMGLRVIAQWSGDGTLNE +IAHKAKLNLIHCHRSMNYMV+HMEKAY IPWMEYNFF Sbjct: 238 LLEEMGLRVIAQWSGDGTLNEFQIAHKAKLNLIHCHRSMNYMVDHMEKAYGIPWMEYNFF 297 Query: 301 GPSKTYESLRAIAARFDATIQQNCEKMIAKHKPAMDAIINKYKPRLENKKVLLMIGGLRS 360 GPSKTYESLRAIAA FD IQ+NCEKMIAK+KP MDAIINKY+PRLE+KKVLLMIGGLRS Sbjct: 298 GPSKTYESLRAIAALFDEKIQENCEKMIAKYKPQMDAIINKYRPRLESKKVLLMIGGLRS 357 Query: 361 RHTIGAYEDLGMDIVASGYEFAHKDDYEKTFPMMKEGTIIMDDPTAYELEELAQKLNVDL 420 RHTIGAYEDLGM+IVASGYEFAHKDDYE+TFPMM EG IIMDDPTAYELEELAQKL+VDL Sbjct: 358 RHTIGAYEDLGMEIVASGYEFAHKDDYERTFPMMPEGAIIMDDPTAYELEELAQKLDVDL 417 Query: 421 VGSGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNSPVWNLIRKKEK 480 V SGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVN+PVWN+I KK K Sbjct: 418 VASGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNNPVWNMISKKNK 477 Query: 481 AQKEGAGV 488 Q EGA + Sbjct: 478 VQAEGASI 485 >Q7WTA7.1 Q7WTA7_PAEAZ Nitrogenase protein alpha chain EC=1.18.6.1 Length = 485 Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/488 (88%), Positives = 466/488 (95%), Gaps = 3/488 (0%) Query: 1 MGLNIEENKKIVEEVLEAYPKKAKKDREKHFQINTEEAQSCGTCALKSNIKSRPGVMTPR 60 MGL+IE NKK+VE++LEAYP KAKKDR+KHFQINTEE + +C+LKSNIKSRPGVMTPR Sbjct: 1 MGLDIEANKKLVEDILEAYPDKAKKDRKKHFQINTEETKQSCSCSLKSNIKSRPGVMTPR 60 Query: 61 GCSFAGSKGVVWGPIKDMVHISHGPIGWGQXXXXSWGTRRNYANGTLGIDNFTAMQITSD 120 GCS+AGSKGVVWGPIKDMVHISHGP+G GQ SWGTRRNYANGTLGIDNFTAMQITSD Sbjct: 61 GCSYAGSKGVVWGPIKDMVHISHGPVGCGQY---SWGTRRNYANGTLGIDNFTAMQITSD 117 Query: 121 FQETDIVFGGDKKLEVIIREITEMFPLAKGISVQSECPVGLIGDDIEAVSKKMAKELDMP 180 FQETDIVFGGDKKLE+I REI EMFPLAKGISVQSECP+GLIGDDIEAVSKKMAKEL+MP Sbjct: 118 FQETDIVFGGDKKLEIICREIKEMFPLAKGISVQSECPIGLIGDDIEAVSKKMAKELEMP 177 Query: 181 IVPVRCEGFRGVSQSLGHHIANDAIRDFVLGKAELAETGPYDVNIIGDYNIGGDAWASRI 240 +VPVRCEGFRGVSQSLGHHIANDAIRDFV+GKA+LAETGPYDVNIIGDYNIGGDAWASRI Sbjct: 178 VVPVRCEGFRGVSQSLGHHIANDAIRDFVMGKADLAETGPYDVNIIGDYNIGGDAWASRI 237 Query: 241 LLEEMGLRVIAQWSGDGTLNELEIAHKAKLNLIHCHRSMNYMVEHMEKAYDIPWMEYNFF 300 LLEEMGLRVIAQWSGDGTLNELEIAHKAK+NLIHCHRSMNYMVEHMEKAY IPWMEYNFF Sbjct: 238 LLEEMGLRVIAQWSGDGTLNELEIAHKAKMNLIHCHRSMNYMVEHMEKAYGIPWMEYNFF 297 Query: 301 GPSKTYESLRAIAARFDATIQQNCEKMIAKHKPAMDAIINKYKPRLENKKVLLMIGGLRS 360 GP+KTYESLRAIAA+FDATIQ+NCEK+IAK+KP MDAII KY+PRLE KKV+L+IGGLRS Sbjct: 298 GPTKTYESLRAIAAKFDATIQENCEKVIAKYKPQMDAIIGKYRPRLEGKKVMLLIGGLRS 357 Query: 361 RHTIGAYEDLGMDIVASGYEFAHKDDYEKTFPMMKEGTIIMDDPTAYELEELAQKLNVDL 420 RHTIGAYEDLGM+IVA+GYEFAHKDDYEKTFP MKEG+IIMDDPTAYELEELAQKLN+DL Sbjct: 358 RHTIGAYEDLGMEIVATGYEFAHKDDYEKTFPDMKEGSIIMDDPTAYELEELAQKLNIDL 417 Query: 421 VGSGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNSPVWNLIRKKEK 480 +GSGVKEKYVYHKMG+PFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVN+PVW+LI KKEK Sbjct: 418 MGSGVKEKYVYHKMGIPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNNPVWSLIDKKEK 477 Query: 481 AQKEGAGV 488 Q EGA V Sbjct: 478 VQPEGASV 485 >B9X2A1.1 B9X2A1_9BACL Nitrogenase protein alpha chain EC=1.18.6.1 Length = 492 Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/488 (87%), Positives = 461/488 (94%), Gaps = 3/488 (0%) Query: 1 MGLNIEENKKIVEEVLEAYPKKAKKDREKHFQINTEEAQSCGTCALKSNIKSRPGVMTPR 60 MGL+IE NKK+VE++LEAYP KAKKDR+KHFQINTEE + +C+LKSNIKSRPGVMTPR Sbjct: 8 MGLDIEANKKLVEDILEAYPDKAKKDRKKHFQINTEETKESCSCSLKSNIKSRPGVMTPR 67 Query: 61 GCSFAGSKGVVWGPIKDMVHISHGPIGWGQXXXXSWGTRRNYANGTLGIDNFTAMQITSD 120 GCS+AGSKGVVWGPIKDMVHISHGP+G GQ GTR NYANGTLGIDNFTAMQITSD Sbjct: 68 GCSYAGSKGVVWGPIKDMVHISHGPVGCGQYRR---GTRCNYANGTLGIDNFTAMQITSD 124 Query: 121 FQETDIVFGGDKKLEVIIREITEMFPLAKGISVQSECPVGLIGDDIEAVSKKMAKELDMP 180 FQETDIVFGGDKKLE+I REI EMFPLAKGISVQSECPVGLIGDDIEAVSKKMAKEL+MP Sbjct: 125 FQETDIVFGGDKKLEIICREIKEMFPLAKGISVQSECPVGLIGDDIEAVSKKMAKELEMP 184 Query: 181 IVPVRCEGFRGVSQSLGHHIANDAIRDFVLGKAELAETGPYDVNIIGDYNIGGDAWASRI 240 +VPVRCEGFRGVSQSLGHHIANDAIRDFV+GKA+LAETGPYDVNIIGDYNIGGDAWASRI Sbjct: 185 VVPVRCEGFRGVSQSLGHHIANDAIRDFVMGKADLAETGPYDVNIIGDYNIGGDAWASRI 244 Query: 241 LLEEMGLRVIAQWSGDGTLNELEIAHKAKLNLIHCHRSMNYMVEHMEKAYDIPWMEYNFF 300 LLEEMGLRVIAQWSGDGTLNELEIAHKAK+NLIHCHRSMNYMV+HMEKAY IPWMEYNFF Sbjct: 245 LLEEMGLRVIAQWSGDGTLNELEIAHKAKMNLIHCHRSMNYMVDHMEKAYGIPWMEYNFF 304 Query: 301 GPSKTYESLRAIAARFDATIQQNCEKMIAKHKPAMDAIINKYKPRLENKKVLLMIGGLRS 360 GPSKTYESLRAIAA+FDATIQ+NCEK+IAK+KP MDAII KY+PRLE KKV+L+IGGLRS Sbjct: 305 GPSKTYESLRAIAAKFDATIQENCEKVIAKYKPQMDAIIGKYRPRLEGKKVMLLIGGLRS 364 Query: 361 RHTIGAYEDLGMDIVASGYEFAHKDDYEKTFPMMKEGTIIMDDPTAYELEELAQKLNVDL 420 RHTIGAYEDLGM+IVA+GYEFAHKDDYE+TFP MK G+IIMDDPTAYELEELAQKLN+DL Sbjct: 365 RHTIGAYEDLGMEIVATGYEFAHKDDYERTFPDMKVGSIIMDDPTAYELEELAQKLNIDL 424 Query: 421 VGSGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNSPVWNLIRKKEK 480 +GSGVKEKYVYHKMG+PFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVN+P+WNL KKEK Sbjct: 425 MGSGVKEKYVYHKMGIPFRQMHSWDYSGPYHGFDGFKIFAKDMDMTVNNPIWNLFDKKEK 484 Query: 481 AQKEGAGV 488 Q EGA V Sbjct: 485 VQPEGASV 492 >Q56JU4.1 Q56JU4_9BACL Nitrogenase protein alpha chain EC=1.18.6.1 Length = 451 Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/445 (80%), Positives = 402/445 (90%), Gaps = 3/445 (0%) Query: 38 AQSCGTCALKSNIKSRPGVMTPRGCSFAGSKGVVWGPIKDMVHISHGPIGWGQXXXXSWG 97 A SC TC++KSN+KSRPGVMT RGC++AGSKGVVWGPIKDMVHISHGPIG GQ SWG Sbjct: 7 ASSCSTCSIKSNLKSRPGVMTARGCAYAGSKGVVWGPIKDMVHISHGPIGCGQY---SWG 63 Query: 98 TRRNYANGTLGIDNFTAMQITSDFQETDIVFGGDKKLEVIIREITEMFPLAKGISVQSEC 157 TRRNYANG LGI+NFTAMQITSDFQE DIVFGGDKKLEVI REI EMFPLAKGISVQSEC Sbjct: 64 TRRNYANGILGINNFTAMQITSDFQEKDIVFGGDKKLEVICREIKEMFPLAKGISVQSEC 123 Query: 158 PVGLIGDDIEAVSKKMAKELDMPIVPVRCEGFRGVSQSLGHHIANDAIRDFVLGKAELAE 217 PVGLIGDDI AV+KKM +EL +P++PVRCEGFRGVSQSLGHHIANDAIRDF++G+ EL E Sbjct: 124 PVGLIGDDIGAVAKKMTQELGIPVIPVRCEGFRGVSQSLGHHIANDAIRDFLMGRMELEE 183 Query: 218 TGPYDVNIIGDYNIGGDAWASRILLEEMGLRVIAQWSGDGTLNELEIAHKAKLNLIHCHR 277 GPYDV+IIGDYNIGGDAWASRILLEEMGLRVIAQWSGDGT+NEL IAHK+KLNLIHCHR Sbjct: 184 CGPYDVSIIGDYNIGGDAWASRILLEEMGLRVIAQWSGDGTINELGIAHKSKLNLIHCHR 243 Query: 278 SMNYMVEHMEKAYDIPWMEYNFFGPSKTYESLRAIAARFDATIQQNCEKMIAKHKPAMDA 337 SMNYM ME+ Y IPWMEYNF GP+KT ESLRAIAARFD TIQ NCE++IA++ M+A Sbjct: 244 SMNYMCTTMEEEYGIPWMEYNFLGPTKTVESLRAIAARFDETIQANCEEVIARYMVEMEA 303 Query: 338 IINKYKPRLENKKVLLMIGGLRSRHTIGAYEDLGMDIVASGYEFAHKDDYEKTFPMMKEG 397 +I KY+PRLE ++ +IGGLR+RHTIGAYEDLGM+IVA+GYEFAHKDDYEKT P +KEG Sbjct: 304 VIRKYRPRLEGRRSCSLIGGLRARHTIGAYEDLGMEIVATGYEFAHKDDYEKTLPDLKEG 363 Query: 398 TIIMDDPTAYELEELAQKLNVDLVGSGVKEKYVYHKMGVPFRQMHSWDYSGPYHGFDGFK 457 I+ DDPTAYELEELAQ+L++DL+G+GVKEKYVYHKMG+PFRQMHSWDYSGPYHGFDGFK Sbjct: 364 AILYDDPTAYELEELAQRLDIDLMGAGVKEKYVYHKMGIPFRQMHSWDYSGPYHGFDGFK 423 Query: 458 IFAKDMDMTVNSPVWNLIRKKEKAQ 482 IFA+DMDMTVNSPVW+L+ +EK + Sbjct: 424 IFARDMDMTVNSPVWSLLPCREKVE 448 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,014,552,310 Number of extensions: 130277218 Number of successful extensions: 310222 Number of sequences better than 1.0e-05: 872 Number of HSP's gapped: 307451 Number of HSP's successfully gapped: 921 Length of query: 488 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 348 Effective length of database: 1,741,754,103 Effective search space: 606130427844 Effective search space used: 606130427844 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)