BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0151.0002.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6CJU0.1 A6CJU0_9BACI Putative uncharacterized protein 310 1e-82 Q2B162.1 Q2B162_9BACI Putative uncharacterized protein 308 2e-82 B3K605.1 B3K605_9BACI Integral membrane protein TerC 303 6e-81 Q9ZF98.1 Q9ZF98_BACME Putative uncharacterized protein ykoY 303 1e-80 Q93PN5.1 Q93PN5_BACPU Putative uncharacterized protein 302 2e-80 >A6CJU0.1 A6CJU0_9BACI Putative uncharacterized protein Length = 266 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 162/247 (65%), Positives = 186/247 (75%), Gaps = 5/247 (2%) Query: 3 AADNALVLAIMVKHLPDEERKKALFYGLAGAFVFRFGSLFVISYLVDIWQVQAIGAIYLL 62 AADNALVLAIMVKHLP+E+RKKALFYGLAGAFVFRFGSLF IS+LV++WQVQAIGA+YLL Sbjct: 24 AADNALVLAIMVKHLPEEKRKKALFYGLAGAFVFRFGSLFAISFLVNVWQVQAIGALYLL 83 Query: 63 FIAGNHIFRKVLFKKPVXXXXXXXXXXXXVQKKKSSFWFTVLKVEVADIAFAVDSIXXXX 122 FIA NHIFRK++ KK +KK S FW TV+KVE+ADIAFAVDSI Sbjct: 84 FIAANHIFRKLMLKKQQGDKEGSEN-----KKKPSGFWATVIKVELADIAFAVDSILAAV 138 Query: 123 XXXXXXPPSGMGKIGGLDGGQFLVIFAGGFIGLVIMRFAASFFVKLLHSRPGLEVAAFFI 182 P + + +IGGLDGG+FLVIFAGG IGL+IMRFAA FFVKLLH +PGLE+AAF I Sbjct: 139 ALAVVLPDTSLPQIGGLDGGKFLVIFAGGLIGLIIMRFAADFFVKLLHKKPGLEIAAFMI 198 Query: 183 VGWVGVKLAVITLAHPSLGVLSEDFAHSTWWKATFYVVLVIIAATGWFMSSHKTEENVGE 242 VGWVGVKLAV TL+HP LGVLSE FA S WK +FY VL++IAA GWF S K + Sbjct: 199 VGWVGVKLAVYTLSHPELGVLSESFAKSPQWKFSFYAVLLLIAAGGWFFSKEKELPDTSA 258 Query: 243 NPVREVD 249 R + Sbjct: 259 YKERSSE 265 >Q2B162.1 Q2B162_9BACI Putative uncharacterized protein Length = 258 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 171/243 (70%), Positives = 191/243 (78%), Gaps = 6/243 (2%) Query: 1 LLAADNALVLAIMVKHLPDEERKKALFYGLAGAFVFRFGSLFVISYLVDIWQVQAIGAIY 60 LLAADNALVLAIMVKHLP+EERKKALFYGLAGAFVFRFGSLFVIS+LVD+WQVQAIGA+Y Sbjct: 22 LLAADNALVLAIMVKHLPEEERKKALFYGLAGAFVFRFGSLFVISFLVDVWQVQAIGALY 81 Query: 61 LLFIAGNHIFRKVLFKKPVXXXXXXXXXXXXVQKKKSSFWFTVLKVEVADIAFAVDSIXX 120 LLFI NHI RK+ +K +KKKS FW TVLKVE+ADIAFAVDSI Sbjct: 82 LLFICINHIVRKLAARK-----FGAKEEEEGEEKKKSGFWVTVLKVELADIAFAVDSILA 136 Query: 121 XXXXXXXXPPSGMGKIGGLDGGQFLVIFAGGFIGLVIMRFAASFFVKLLHSRPGLEVAAF 180 P SG+ IGGLDGG+FLVIFAGGFIGL+IMRFAA+ FV LLHSRPGLEVAAF Sbjct: 137 AVALAIALPDSGLPNIGGLDGGKFLVIFAGGFIGLIIMRFAANLFVGLLHSRPGLEVAAF 196 Query: 181 FIVGWVGVKLAVITLAHPSLGVLSEDFAHSTWWKATFYVVLVIIAATGWFMSSHKTEENV 240 IVGWVGVKL+V TL+HP+LGVL+E FA S+ WK TFY+VL++IA GWF S K EE V Sbjct: 197 LIVGWVGVKLSVYTLSHPALGVLAEGFAKSSEWKITFYIVLILIAVGGWFFSKPK-EEAV 255 Query: 241 GEN 243 E Sbjct: 256 SEG 258 >B3K605.1 B3K605_9BACI Integral membrane protein TerC Length = 274 Score = 303 bits (777), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 161/252 (63%), Positives = 191/252 (75%), Gaps = 6/252 (2%) Query: 1 LLAADNALVLAIMVKHLPDEERKKALFYGLAGAFVFRFGSLFVISYLVDIWQVQAIGAIY 60 LLAADNALVLAIMVKHLP+ +RKKALFYGL GAFVFR GSLF+IS+LVD+WQVQAIGA+Y Sbjct: 20 LLAADNALVLAIMVKHLPENQRKKALFYGLLGAFVFRIGSLFLISFLVDVWQVQAIGALY 79 Query: 61 LLFIAGNHIFRKVLF-KKPVXXXXXXXXXXXXVQKKKSSFWFTVLKVEVADIAFAVDSIX 119 LL+I+ NH + + KKP KK+S FW TV KVEVADIAFAVDSI Sbjct: 80 LLYISINHTLKHFIKGKKPTEDAKPKAD----KPKKQSGFWMTVFKVEVADIAFAVDSIL 135 Query: 120 XXXXXXXXXPPSGMGKIGGLDGGQFLVIFAGGFIGLVIMRFAASFFVKLLHSRPGLEVAA 179 PPSG+ IGGLDGGQF+VIF GGFIGL+IMRFAAS+FVKLL RPGLEVAA Sbjct: 136 AAVALAVALPPSGLANIGGLDGGQFIVIFLGGFIGLIIMRFAASYFVKLLQQRPGLEVAA 195 Query: 180 FFIVGWVGVKLAVITLAHPSLGVLSEDFAHSTWWKATFYVVLVIIAATGWFMSSHKTEEN 239 F IVGWVGVKLAVITLAHP + ++ F S+ WKA+FY+VLV+IA GWF SS + ++ Sbjct: 196 FLIVGWVGVKLAVITLAHPDVALIDHHFPESSIWKASFYIVLVLIAVIGWFSSSKEKVQD 255 Query: 240 VGENPVREVDKQ 251 +N ++EV++Q Sbjct: 256 -EDNAIKEVEEQ 266 >Q9ZF98.1 Q9ZF98_BACME Putative uncharacterized protein ykoY Length = 271 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 156/253 (61%), Positives = 195/253 (77%), Gaps = 7/253 (2%) Query: 1 LLAADNALVLAIMVKHLPDEERKKALFYGLAGAFVFRFGSLFVISYLVDIWQVQAIGAIY 60 +LAADNALV+AIMVKHLP+E+RKKALFYGLAGAF+FRFGSLF+IS+LVD+WQ+QAIGAIY Sbjct: 22 ILAADNALVMAIMVKHLPEEKRKKALFYGLAGAFIFRFGSLFLISFLVDVWQLQAIGAIY 81 Query: 61 LLFIAGNHIFRKVLFKKPVXXXXXXXXXXXXVQKKKSSFWFTVLKVEVADIAFAVDSIXX 120 LLFI+ NHI ++ + K +KK S FW TVLKVE+ADIAFAVDSI Sbjct: 82 LLFISINHIVKRYVKKDD------HEKVKEADEKKGSGFWMTVLKVEIADIAFAVDSILA 135 Query: 121 XXXXXXXXPPSGMGKIGGLDGGQFLVIFAGGFIGLVIMRFAASFFVKLLHSRPGLEVAAF 180 P + + +IGGLDGGQFLVIFAGG +GL+IMRFAA++FVKLL++RPGLE AAF Sbjct: 136 AVALAVTLPTTNLPQIGGLDGGQFLVIFAGGIMGLIIMRFAATWFVKLLNTRPGLETAAF 195 Query: 181 FIVGWVGVKLAVITLAHPSLGVLSEDFAHSTWWKATFYVVLVIIAATGWFMSSHKTEENV 240 IVGWVGVKLAV TLAHP LG+++E F S WK TF++VL+ IAA+GWF+S +K + ++ Sbjct: 196 AIVGWVGVKLAVYTLAHPELGIINEHFPESKVWKITFWIVLLGIAASGWFLSKNKEQTDL 255 Query: 241 -GENPVREVDKQL 252 G +E K++ Sbjct: 256 EGSEKEKESLKKI 268 >Q93PN5.1 Q93PN5_BACPU Putative uncharacterized protein Length = 275 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 154/237 (64%), Positives = 182/237 (76%), Gaps = 7/237 (2%) Query: 1 LLAADNALVLAIMVKHLPDEERKKALFYGLAGAFVFRFGSLFVISYLVDIWQVQAIGAIY 60 +LAADNALVLAIMVKHLP++ERKKALFYGLAGAFVFRF SLFVIS+LVD+WQVQAIG IY Sbjct: 22 ILAADNALVLAIMVKHLPEKERKKALFYGLAGAFVFRFASLFVISFLVDVWQVQAIGGIY 81 Query: 61 LLFIAGNHIFRKVLFKKPVXXXXXXXXXXXXVQKKKSSFWFTVLKVEVADIAFAVDSIXX 120 LLFIA NHI RKV+FK + KK+S FW TVLKVE+ADIAFAVDSI Sbjct: 82 LLFIALNHILRKVIFKNRINKDNKK-------PKKQSGFWMTVLKVEIADIAFAVDSILA 134 Query: 121 XXXXXXXXPPSGMGKIGGLDGGQFLVIFAGGFIGLVIMRFAASFFVKLLHSRPGLEVAAF 180 PP+G+ IGG+D GQF +I GG IG++IMRFAA++FVK+LH++PGLE+AAF Sbjct: 135 AVALAIALPPTGLATIGGMDAGQFFIILTGGLIGVIIMRFAATWFVKILHAKPGLEIAAF 194 Query: 181 FIVGWVGVKLAVITLAHPSLGVLSEDFAHSTWWKATFYVVLVIIAATGWFMSSHKTE 237 IVGWVGVKL V+TL+HP L V+ +FAHST WK FY VLV+IA GWF+S + Sbjct: 195 MIVGWVGVKLMVLTLSHPDLAVIPTEFAHSTGWKLFFYSVLVLIALGGWFLSKEDKD 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.143 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,327,781,794 Number of extensions: 50213935 Number of successful extensions: 146604 Number of sequences better than 1.0e-05: 428 Number of HSP's gapped: 146242 Number of HSP's successfully gapped: 429 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)