BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0036.p (408 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0G040.1 C0G040_9FIRM Putative uncharacterized protein 539 e-151 C2BD77.1 C2BD77_9FIRM Putative uncharacterized protein 307 1e-81 C1UAV5.1 C1UAV5_9ACTN DNA-binding protein, excisionase family 274 1e-71 C5EA64.1 C5EA64_BIFLO Putative uncharacterized protein 259 3e-67 C2GU30.1 C2GU30_BIFLO Putative uncharacterized protein 253 2e-65 >C0G040.1 C0G040_9FIRM Putative uncharacterized protein Length = 414 Score = 539 bits (1388), Expect = e-151, Method: Compositional matrix adjust. Identities = 255/399 (63%), Positives = 324/399 (81%), Gaps = 1/399 (0%) Query: 1 MHKNEPVAEIELDEATVSISAIGQVYAKQHVPVGIPVKKGKIDRAGLNEWWRGRAIPASR 60 MHKN PVA++ELDEA+ +IS +G VY K+ VPVGIPVKK IDRA LN WW+GRAIPASR Sbjct: 7 MHKNFPVADLELDEASGAISTVGIVYEKERVPVGIPVKKNIIDRAALNAWWKGRAIPASR 66 Query: 61 DGIKEALLELNLSATQKLLDKSYGLSLSDQYWIRPSAPELKWNNINFFGNPFSEDVGNVL 120 GI+ AL +L++S+TQ LL+K GLSLSDQYW+ P + W +NFF N FS+DVGN+L Sbjct: 67 MGIENALTKLHMSSTQMLLEKCLGLSLSDQYWVCPKNSGITWEQVNFFENTFSDDVGNIL 126 Query: 121 FGKVSS-DAVSLVSPDNTSDGWLKKKWAIINGKRCLIKGGSGATQQEPYNEVIASKIMER 179 F + +S + VSL+SPDNTSDGWLKKKW II+ KRCLIKGGSGATQQEPYNEV+AS+IM+R Sbjct: 127 FDQTASGNPVSLMSPDNTSDGWLKKKWKIIDDKRCLIKGGSGATQQEPYNEVLASRIMDR 186 Query: 180 LGIPHVPYTLIEQEDYPYSVCENFITPQTELITAWYVMHTQQKPNHVSVYQHYVSCCEEL 239 L IPHV Y+L+ ++DYPYSVCE+FITP+TELI+AW++M T +KPNH+S+YQHY++CCEE Sbjct: 187 LDIPHVKYSLLVEDDYPYSVCEDFITPETELISAWHLMQTSRKPNHISIYQHYINCCEEN 246 Query: 240 GIPGIVKALDQMMVVDYLVANEDRHQNNFGVIRHAETLEWIGPAPIFDSGSSLWFSKPLG 299 G+P I KALDQM+V+DYL+ NEDRH NNFGV+R AE+L+++ APIFDSG+S+WF KP Sbjct: 247 GVPEIRKALDQMIVLDYLLVNEDRHLNNFGVVRKAESLKYMCAAPIFDSGTSMWFDKPTA 306 Query: 300 LIRADGKLTCKPFKPDHNEQIKLVTSFDWLDLSALDGIEEEVQDIFRDSLFVDEARCHAI 359 +I KL CKPFK H EQIKLV+SF+WL + L GIEEE ++I R SLFVDE RC A+ Sbjct: 307 MIGDITKLVCKPFKNTHEEQIKLVSSFEWLAMEKLSGIEEEFREIVRGSLFVDEKRCDAL 366 Query: 360 CQALRGRIERLQEIVHSWHSQSWVDDHSTDVKENIAYSG 398 C AL+ R++ L++++H+ + +DD+ DVKENIAYSG Sbjct: 367 CAALKNRVKMLEKVIHANQTVYTIDDYKNDVKENIAYSG 405 >C2BD77.1 C2BD77_9FIRM Putative uncharacterized protein Length = 387 Score = 307 bits (787), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 157/376 (41%), Positives = 245/376 (65%), Gaps = 14/376 (3%) Query: 2 HKNEPVAEIELDEATVSISAIGQVYAKQHVPVGIPVKKGKIDRAGLNEWWRGRAIPASRD 61 +KN PV ++++DE ++ + IG++Y +++ P GI +I++ + W R IPASRD Sbjct: 7 NKNIPVVDLDIDEHSLYVKNIGEIYNQEYKPFGIK----EINKNEIYSWLSNRKIPASRD 62 Query: 62 GIKEALLELNLSATQKLLDKSYGLSLSDQYWIRPSAPELKWNNINFFGNPFSEDVGNVLF 121 I+E L ++++ T L+ K++ LSLSDQYW++P +KW +INFF N FS+D+G +F Sbjct: 63 NIEELLDSIDIATTNLLIFKAFALSLSDQYWLKPENQNIKWEDINFFDNDFSDDLGKFIF 122 Query: 122 GKVSSDAVSLVSPDNTSDGWLKKKWAIINGKRCLIKGGSGATQQEPYNEVIASKIMERLG 181 G +++ SL +PDNTSDG LKK W II+GKR LIK G QEP+NE++AS+I +RL Sbjct: 123 GN-ANEISSLKTPDNTSDGDLKKSWKIIDGKRFLIKAGRPPYNQEPFNEILASEICKRLK 181 Query: 182 IPHVPYTLIEQEDYPYSVCENFITPQTELITAWYVMHTQQKPNHVSVYQHYVSCCEELGI 241 +V Y + + Y ENFI TEL++AW + QKPNH++ YQ Y+S C++LGI Sbjct: 182 FDYVEYKAYKLNNKIYCGSENFIDKNTELVSAWDIYKDSQKPNHINKYQWYISLCKDLGI 241 Query: 242 PGIVKALDQMMVVDYLVANEDRHQNNFGVIRHAETLEWIGPAPIFDSGSSLWFSKPLGLI 301 + K++D M+V+DY+VANEDRH NFG+IR+ L++I PAPIFD+G S++ + +I Sbjct: 242 -DVKKSIDDMIVLDYIVANEDRHFRNFGLIRNINDLKFIKPAPIFDTGYSMYCQQGDNMI 300 Query: 302 RADGKL-TCKPFKPDHNEQIKLVTSFDWLDLSALDGIEEEVQDIFRDSLFVDE---ARCH 357 GK+ KPF+ H QIKLV ++ DLS+L+ I + D++ + ++E R + Sbjct: 301 ---GKVDKSKPFRDKHENQIKLVNLKNY-DLSSLNDIGDYAYDLYSLNAHMEEISTKRAN 356 Query: 358 AICQALRGRIERLQEI 373 + + R+++L++I Sbjct: 357 ILAHTISNRVKKLEKI 372 >C1UAV5.1 C1UAV5_9ACTN DNA-binding protein, excisionase family Length = 443 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 151/378 (39%), Positives = 214/378 (56%), Gaps = 11/378 (2%) Query: 1 MHKNEPVAEIELDEATVSISAIGQVYAKQHVPVGIPVKKG-KIDRAGLNEWWRGRAIPAS 59 M++ V DEA + G + P+G+ +G K+ + L+ WW+ R IP + Sbjct: 73 MNRTHEVLSFRYDEAAGAFVDAGDIVDPARAPLGMISPRGRKVSKDALSFWWKHRCIPGT 132 Query: 60 RDGIKEALLELNLSATQKLLDKSYGLSLSDQYWIRPSAPELKWNNINFFGNPFSEDVGNV 119 R+GI L EL + + ++ KS GLSLSDQYWIRP E+ W ++N+F N F E + Sbjct: 133 REGIDAKLAELGVDSPARIPFKSLGLSLSDQYWIRPENCEIAWEDVNYFDNDFCE----M 188 Query: 120 LFGKVSSDAVSLVSPDNTSDGWLKKKWAIINGKRCLIKGGSGATQQEPYNEVIASKIMER 179 G+ D V L SPDNTS+G L KKW KR L+KGGS QEP+NE AS + R Sbjct: 189 RSGRGWLDGVGLDSPDNTSEGELPKKWVCDGAKRLLVKGGS-VLNQEPFNEAAASALYSR 247 Query: 180 LGIP--HVPYTLIEQEDYPYSVCENFITPQTELITAWYVMHTQQKPNHVSVYQHYVSCCE 237 L P +V Y L + +CENF+ E I ++YV T ++PNH + YQHY+ CC Sbjct: 248 LLAPDEYVKYRLESRAGGAVCICENFVGSTEEYIPSYYVRQTMRQPNHRNDYQHYLECCS 307 Query: 238 ELGIPGIVKALDQMMVVDYLVANEDRHQNNFGVIRHAETLEWIGPAPIFDSGSSLWFSKP 297 L + AL +M+V D ++ N DRH NFG++R ETL + AP+FD+G SLW S Sbjct: 308 ALDAEHVEIALSKMIVCDDILGNSDRHWRNFGLVRDVETLRY-RIAPLFDTGGSLWCSST 366 Query: 298 LGLIRA-DGKLTCKPFKPDHNEQIKLVTSFDWLDLSALDGIEEEVQDIFRDSLFVDEARC 356 L +RA D T KPF D N Q++LV + W D +AL+G +E+ I D+ + E R Sbjct: 367 LESLRAHDFSFTTKPFYEDANRQLRLVNDYSWFDPAALEGFADELSAILSDNPALAE-RV 425 Query: 357 HAICQALRGRIERLQEIV 374 IC A++ RI+R+ ++ Sbjct: 426 DYICCAVQKRIDRIVRML 443 >C5EA64.1 C5EA64_BIFLO Putative uncharacterized protein Length = 429 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/387 (37%), Positives = 221/387 (57%), Gaps = 18/387 (4%) Query: 1 MHKNEPVAEIELDEATVSISAIGQVYAKQHVPVGIPVKKGK--IDRAGLNEWWRGRAIPA 58 M + PV + D ++ G++ +P+ + + GK I ++ WWR RAIP Sbjct: 1 MCRRHPVLAFDYDPSSGKAVGSGRILDCSRLPLEL-ISHGKPAIYAKSIDAWWRRRAIPP 59 Query: 59 SRDGIKEALLELNLSATQKLLDKSYGLSLSDQYWIRPSAPELKWNNINFFGNPFSEDVGN 118 +RDGI+ L + + + +LL++S+GLSLSDQYW++P + +L+W+ +NFF NPF E++G Sbjct: 60 TRDGIRGILDSMGIRSAVELLNRSHGLSLSDQYWVKPESSDLEWDTVNFFTNPFDEELGR 119 Query: 119 VLF-GKVSSDAVSLVSPDNTSDGWLKKKWAII-NGKRCLIKGGSGATQQEPYNEVIASKI 176 L + SS SL +PD ++ G L K+W I +G R LIK +G T QEP NE+IAS + Sbjct: 120 TLLTARSSSHRFSLNAPDASTGGDLPKRWTIAGDGTRILIK--AGRTGQEPVNELIASDL 177 Query: 177 MERLGIPHVPYTLIEQEDYPYSVCENFITPQTELITAWYVMHTQQKPNHVSVYQHYVSCC 236 RLGIP V Y L E ++ P S C +T EL++AW ++ + ++ N +S ++ Sbjct: 178 CSRLGIPAVRYNLGEYDNRPVSTCSEMLTDTEELVSAWQILESVKRDNRLSARDQWIRAA 237 Query: 237 EELGIPG--IVKALDQMMVVDYLVANEDRHQNNFGVIRHAETLEWIGPAPIFDSGSSLWF 294 + G G +V A D ++VDYL+ N DRH NNFG+IR ETL + PAP+FD+G+SLW Sbjct: 238 QLFGCEGAAVVHATDDWLLVDYLMRNIDRHYNNFGLIRDVETLR-VRPAPLFDTGASLWC 296 Query: 295 SKPLGLIRADGKLTCKPF-----KPDHNEQIKLVTSFDWLDLSALDGIEEEVQDIFRDSL 349 + L + D K KPF P Q++L++ + DL LDG EE+V + Sbjct: 297 GE-LAIDNRDYK--AKPFYATYKTPTARRQLRLISDWTRYDLGKLDGWEEQVGHRLSVTG 353 Query: 350 FVDEARCHAICQALRGRIERLQEIVHS 376 V E R AI L RI ++ + S Sbjct: 354 LVPETRITAIATMLSARIREVRSLAES 380 >C2GU30.1 C2GU30_BIFLO Putative uncharacterized protein Length = 423 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 143/365 (39%), Positives = 213/365 (58%), Gaps = 18/365 (4%) Query: 23 GQVYAKQHVPVGIPVKKGK--IDRAGLNEWWRGRAIPASRDGIKEALLELNLSATQKLLD 80 G++ +P+ + + GK I ++ WWR RAIP +RDGI+ L + + + +LL+ Sbjct: 17 GRILDCSRLPLEL-ISHGKPAIYAKSIDAWWRRRAIPPTRDGIRGILDSMGIRSAVELLN 75 Query: 81 KSYGLSLSDQYWIRPSAPELKWNNINFFGNPFSEDVGNVLF-GKVSSDAVSLVSPDNTSD 139 +S+GLSLSDQYW++P + +L+W+ +NFF NPF E++G L + SS SL +PD ++ Sbjct: 76 RSHGLSLSDQYWVKPESSDLEWDTVNFFTNPFDEELGRTLLTARSSSHRFSLNAPDASTG 135 Query: 140 GWLKKKWAII-NGKRCLIKGGSGATQQEPYNEVIASKIMERLGIPHVPYTLIEQEDYPYS 198 G L K+W I +G R LIK +G T QEP NE+IAS + RLGIP V Y L E ++ P S Sbjct: 136 GDLPKRWTIAGDGTRILIK--AGRTGQEPVNELIASDLCSRLGIPAVRYNLGEYDNRPVS 193 Query: 199 VCENFITPQTELITAWYVMHTQQKPNHVSVYQHYVSCCEELGIPG--IVKALDQMMVVDY 256 C +T EL++AW ++ + ++ N +S ++ + G G +V A D ++VDY Sbjct: 194 TCPEMLTDTEELVSAWQILESVKRDNRLSARDQWIRAAQLFGCEGAAVVHATDDWLLVDY 253 Query: 257 LVANEDRHQNNFGVIRHAETLEWIGPAPIFDSGSSLWFSKPLGLIRADGKLTCKPF---- 312 L+ N DRH NNFG+IR ETL + PAP+FD+G+SLW + L + D K KPF Sbjct: 254 LMRNIDRHYNNFGLIRDVETLR-VRPAPLFDTGASLWCGE-LAIDNRDYK--AKPFYATY 309 Query: 313 -KPDHNEQIKLVTSFDWLDLSALDGIEEEVQDIFRDSLFVDEARCHAICQALRGRIERLQ 371 P Q++L++ + DL LDG EE+V + V E R AI L RI ++ Sbjct: 310 KTPTARRQLRLISDWTRYDLGKLDGWEEQVGHRLSVTGLVPETRITAIATMLSARIREVR 369 Query: 372 EIVHS 376 + S Sbjct: 370 SLAES 374 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,669,021,428 Number of extensions: 115351711 Number of successful extensions: 239664 Number of sequences better than 1.0e-05: 50 Number of HSP's gapped: 239540 Number of HSP's successfully gapped: 50 Length of query: 408 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 270 Effective length of database: 1,760,596,133 Effective search space: 475360955910 Effective search space used: 475360955910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)