BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0035.p (899 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9E1P0.1 B9E1P0_CLOK1 Sensor protein EC=2.7.13.3 1172 0.0 A5N880.1 A5N880_CLOK5 Sensor protein EC=2.7.13.3 1172 0.0 Q926L0.1 Q926L0_LISIN Sensor protein EC=2.7.13.3 951 0.0 C4IDW5.1 C4IDW5_CLOBU Sensor protein KdpD EC=2.7.13.3 939 0.0 B1QXG5.1 B1QXG5_CLOBU Sensor protein EC=2.7.13.3 939 0.0 >B9E1P0.1 B9E1P0_CLOK1 Sensor protein EC=2.7.13.3 Length = 898 Score = 1172 bits (3033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 580/897 (64%), Positives = 702/897 (78%) Query: 1 MEINQTGDGSILEQLTGMKTGQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGG 60 M I+QT + EQL M T +R+GRL+I+ GYA G GKTCAML AHE +K+G DVV G Sbjct: 1 MGIHQTNSNLLTEQLLNMSTEKRQGRLRIYFGYAAGVGKTCAMLNDAHEMKKDGIDVVAG 60 Query: 61 FIETHARPDTLAMLEGLELVPPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAG 120 +IE HARP+T+ +L GLEL+PP+++ Y ++ EFDLD AL+R P+L+L+D+LAH+N Sbjct: 61 YIEPHARPETMVLLNGLELLPPLEVLYNGIMLKEFDLDSALKRKPQLVLVDELAHSNAVA 120 Query: 121 CRHKKRYQDVEELLRAGIHVYTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVE 180 CRHKKRYQDVEELL AGI VYTTINVQ IESL D+V SITG++V+ERIPDSVFDSADQVE Sbjct: 121 CRHKKRYQDVEELLHAGIDVYTTINVQHIESLNDVVASITGISVRERIPDSVFDSADQVE 180 Query: 181 LVDIEPNDLIDRLHKGKIYRDNADEQAMGQLFTKEKLTALREIALRNTASQLNRIAIQIS 240 LVDIEP+DLIDRL+KGK+Y ++A+ FTKEKL ALREIALR TA Q+NR+A+ + Sbjct: 181 LVDIEPDDLIDRLNKGKVYGREQAQRALVNFFTKEKLVALREIALRRTADQVNRVAVLNN 240 Query: 241 EQAKKNDYDTKDHILVCLSSAASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNK 300 +Q+K + T +HILVCLSSA SN KVIR AARMA+AFHG FTAL VETPQ ++L++KN Sbjct: 241 KQSKNGGHYTNEHILVCLSSAPSNAKVIRTAARMADAFHGTFTALLVETPQIKELSEKNM 300 Query: 301 TELRDNLRLAEQMGANIATVYGEDVPGQIAEYAKTSRVSKIVLGRSPFKKRGYAKSNLVD 360 +LR+NLRLAEQ+ A IATVYGED+P QIAEYA SRVSKIV+GRS K+ +AK+N VD Sbjct: 301 IKLRENLRLAEQLSAQIATVYGEDIPMQIAEYATASRVSKIVIGRSNHVKKWFAKTNFVD 360 Query: 361 KLTTLLPNIEIYIIPYTQPSFYKRLPLYARYPKLSLADTNKTIAILVVCTLIGIWFRYLG 420 +L TL PN++IYIIP TQ SFY ++ + + +LSL D K+ IL +CTLIG+WF LG Sbjct: 361 RLITLAPNLDIYIIPDTQSSFYVKIYKFTKPLELSLPDIFKSAGILFICTLIGLWFDSLG 420 Query: 421 FLESNIITVYILGVLLSAIVTKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPVTF 480 F ESNII VYILGVL +A+VTKG++YSAV+S++SVLVFNYFFT PY+SL AY+ GYPVTF Sbjct: 421 FSESNIIMVYILGVLFNAMVTKGKIYSAVASILSVLVFNYFFTYPYFSLLAYDPGYPVTF 480 Query: 481 LVMLAASFITSTLTMRVSEQARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQMVK 540 LVML ASFI STLT RV EQAR SAQKAYRTEVLLET+RKLQQA+D I E A Q+VK Sbjct: 481 LVMLMASFIVSTLTKRVKEQARYSAQKAYRTEVLLETNRKLQQARDKSEIFSETAHQLVK 540 Query: 541 LLDRTVIFYSVQEGALSAPLIFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATTDTF 600 LLDRTVIFY Q LS PL+FPK+G E Y ++ERAVA+WV KNNKRAGATT+T Sbjct: 541 LLDRTVIFYPEQHNTLSEPLVFPKDGWEDYFKIYLKTDERAVAEWVYKNNKRAGATTNTL 600 Query: 601 FGANCLYHAVRGGDTVFAVAAIVMEQEEPLEVFEKGLMIAMXXXXXXXXXXXXXXXXXXX 660 A CLY AVR D VFAV IVM+++ PLE FEK LMIAM Sbjct: 601 SAAKCLYLAVRSSDMVFAVVGIVMDKKVPLEAFEKSLMIAMLGDCALSLEKEKLNERQKQ 660 Query: 661 ISMQIQQEHLRANLLRSISHDLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYDDSI 720 ISMQIQQE LR NLLR+ISHDLRTPLTSISGNAGIL+GNS VLSE QKKGLYTDIYDDS+ Sbjct: 661 ISMQIQQEKLRGNLLRTISHDLRTPLTSISGNAGILMGNSKVLSEAQKKGLYTDIYDDSM 720 Query: 721 WLIHLVENLLSISRIENGTLNLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDELLMA 780 WLI+LVEN+LSI+RIE+G +NLN Q EL+EE+I+EAL H+NRNS + I T ++DEL+MA Sbjct: 721 WLINLVENILSITRIEDGKINLNLQPELLEEIIAEALCHINRNSVNYHIETIVEDELIMA 780 Query: 781 RMDSRLIVQVLINIVDNAIKYTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKARLFE 840 ++DSRLI+QV+INIVDNAIKYT GSHI +SA++ ++VEI+DDGPGI +EAK RLF+ Sbjct: 781 KVDSRLIIQVIINIVDNAIKYTPPGSHIVISAKRRKQFILVEIADDGPGIEDEAKDRLFD 840 Query: 841 MFFTADNIXXXXXXXXXXXXSLCKSIVNAHGGTIGVRDNVPKGTVFYFTLHAEEVNV 897 MF+T DNI SLCKSIV+AHGGTI V+DN+P+GTV FTL A+EV + Sbjct: 841 MFYTVDNIHGDSRRGLGLGLSLCKSIVHAHGGTIYVKDNIPQGTVICFTLQAQEVKL 897 >A5N880.1 A5N880_CLOK5 Sensor protein EC=2.7.13.3 Length = 898 Score = 1172 bits (3033), Expect = 0.0, Method: Compositional matrix adjust. Identities = 580/897 (64%), Positives = 702/897 (78%) Query: 1 MEINQTGDGSILEQLTGMKTGQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGG 60 M I+QT + EQL M T +R+GRL+I+ GYA G GKTCAML AHE +K+G DVV G Sbjct: 1 MGIHQTNSNLLTEQLLNMSTEKRQGRLRIYFGYAAGVGKTCAMLNDAHEMKKDGIDVVAG 60 Query: 61 FIETHARPDTLAMLEGLELVPPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAG 120 +IE HARP+T+ +L GLEL+PP+++ Y ++ EFDLD AL+R P+L+L+D+LAH+N Sbjct: 61 YIEPHARPETMVLLNGLELLPPLEVLYNGIMLKEFDLDSALKRKPQLVLVDELAHSNAVA 120 Query: 121 CRHKKRYQDVEELLRAGIHVYTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVE 180 CRHKKRYQDVEELL AGI VYTTINVQ IESL D+V SITG++V+ERIPDSVFDSADQVE Sbjct: 121 CRHKKRYQDVEELLHAGIDVYTTINVQHIESLNDVVASITGISVRERIPDSVFDSADQVE 180 Query: 181 LVDIEPNDLIDRLHKGKIYRDNADEQAMGQLFTKEKLTALREIALRNTASQLNRIAIQIS 240 LVDIEP+DLIDRL+KGK+Y ++A+ FTKEKL ALREIALR TA Q+NR+A+ + Sbjct: 181 LVDIEPDDLIDRLNKGKVYGREQAQRALVNFFTKEKLVALREIALRRTADQVNRVAVLNN 240 Query: 241 EQAKKNDYDTKDHILVCLSSAASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNK 300 +Q+K + T +HILVCLSSA SN KVIR AARMA+AFHG FTAL VETPQ ++L++KN Sbjct: 241 KQSKNGGHYTNEHILVCLSSAPSNAKVIRTAARMADAFHGTFTALLVETPQIKELSEKNM 300 Query: 301 TELRDNLRLAEQMGANIATVYGEDVPGQIAEYAKTSRVSKIVLGRSPFKKRGYAKSNLVD 360 +LR+NLRLAEQ+ A IATVYGED+P QIAEYA SRVSKIV+GRS K+ +AK+N VD Sbjct: 301 IKLRENLRLAEQLSAQIATVYGEDIPMQIAEYATASRVSKIVIGRSNHVKKWFAKTNFVD 360 Query: 361 KLTTLLPNIEIYIIPYTQPSFYKRLPLYARYPKLSLADTNKTIAILVVCTLIGIWFRYLG 420 +L TL PN++IYIIP TQ SFY ++ + + +LSL D K+ IL +CTLIG+WF LG Sbjct: 361 RLITLAPNLDIYIIPDTQSSFYVKIYKFTKPLELSLPDIFKSAGILFICTLIGLWFDSLG 420 Query: 421 FLESNIITVYILGVLLSAIVTKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPVTF 480 F ESNII VYILGVL +A+VTKG++YSAV+S++SVLVFNYFFT PY+SL AY+ GYPVTF Sbjct: 421 FSESNIIMVYILGVLFNAMVTKGKIYSAVASILSVLVFNYFFTYPYFSLLAYDPGYPVTF 480 Query: 481 LVMLAASFITSTLTMRVSEQARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQMVK 540 LVML ASFI STLT RV EQAR SAQKAYRTEVLLET+RKLQQA+D I E A Q+VK Sbjct: 481 LVMLMASFIVSTLTKRVKEQARYSAQKAYRTEVLLETNRKLQQARDKSEIFSETAHQLVK 540 Query: 541 LLDRTVIFYSVQEGALSAPLIFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATTDTF 600 LLDRTVIFY Q LS PL+FPK+G E Y ++ERAVA+WV KNNKRAGATT+T Sbjct: 541 LLDRTVIFYPEQHNTLSEPLVFPKDGWEDYFKIYLKTDERAVAEWVYKNNKRAGATTNTL 600 Query: 601 FGANCLYHAVRGGDTVFAVAAIVMEQEEPLEVFEKGLMIAMXXXXXXXXXXXXXXXXXXX 660 A CLY AVR D VFAV IVM+++ PLE FEK LMIAM Sbjct: 601 SAAKCLYLAVRSSDMVFAVVGIVMDKKVPLEAFEKSLMIAMLGDCALSLEKEKLNERQKQ 660 Query: 661 ISMQIQQEHLRANLLRSISHDLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYDDSI 720 ISMQIQQE LR NLLR+ISHDLRTPLTSISGNAGIL+GNS VLSE QKKGLYTDIYDDS+ Sbjct: 661 ISMQIQQEKLRGNLLRTISHDLRTPLTSISGNAGILMGNSKVLSEAQKKGLYTDIYDDSM 720 Query: 721 WLIHLVENLLSISRIENGTLNLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDELLMA 780 WLI+LVEN+LSI+RIE+G +NLN Q EL+EE+I+EAL H+NRNS + I T ++DEL+MA Sbjct: 721 WLINLVENILSITRIEDGKINLNLQPELLEEIIAEALCHINRNSVNYHIETIVEDELIMA 780 Query: 781 RMDSRLIVQVLINIVDNAIKYTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKARLFE 840 ++DSRLI+QV+INIVDNAIKYT GSHI +SA++ ++VEI+DDGPGI +EAK RLF+ Sbjct: 781 KVDSRLIIQVIINIVDNAIKYTPPGSHIVISAKRRKQFILVEIADDGPGIEDEAKDRLFD 840 Query: 841 MFFTADNIXXXXXXXXXXXXSLCKSIVNAHGGTIGVRDNVPKGTVFYFTLHAEEVNV 897 MF+T DNI SLCKSIV+AHGGTI V+DN+P+GTV FTL A+EV + Sbjct: 841 MFYTVDNIHGDSRRGLGLGLSLCKSIVHAHGGTIYVKDNIPQGTVICFTLQAQEVKL 897 >Q926L0.1 Q926L0_LISIN Sensor protein EC=2.7.13.3 Length = 888 Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/879 (53%), Positives = 636/879 (72%), Gaps = 3/879 (0%) Query: 21 GQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGGFIETHARPDTLAMLEGLELV 80 +RRG+L+I+ GYA G GKT AML A E K G D+V G++E HARP+T+ +L GLE + Sbjct: 13 NKRRGKLRIYFGYAAGVGKTFAMLNDAQELVKTGVDLVVGYVEPHARPETMKLLNGLEKI 72 Query: 81 PPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAGCRHKKRYQDVEELLRAGIHV 140 P + Y+ + EFDLD AL+R+P+LI++D+LAH N CRHKKRYQD+EELL+AGI V Sbjct: 73 PTKPILYKGVKLYEFDLDSALKRNPKLIIVDELAHTNAYACRHKKRYQDIEELLQAGIDV 132 Query: 141 YTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVELVDIEPNDLIDRLHKGKIYR 200 +TT+NVQ IESL DIV SIT + V ERIPD+VFD AD++ELVDIEP DL+DRL+KGKIYR Sbjct: 133 FTTVNVQHIESLNDIVESITNIHVLERIPDAVFDGADEIELVDIEPQDLLDRLNKGKIYR 192 Query: 201 DNADEQAMGQLFTKEKLTALREIALRNTASQLNRIAIQISEQAKKNDYDTKDHILVCLSS 260 + QA+ FT +KL ALREIALR TA Q+ RIA + + KN+Y K+HILVC+S Sbjct: 193 EKQARQAVLNFFTTDKLIALREIALRRTADQVKRIA-ESNIVNPKNNY-GKEHILVCISP 250 Query: 261 AASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNKTELRDNLRLAEQMGANIATV 320 + N+KVIR AARMAEA G+ TA+FVETP+ ++ + K + LR NLRLAEQ+GA I++V Sbjct: 251 SQGNEKVIRTAARMAEALKGKLTAVFVETPEYEESSIKEQESLRKNLRLAEQLGAQISSV 310 Query: 321 YGEDVPGQIAEYAKTSRVSKIVLGRSPFKKRGYAKSNLVDKLTTLLPNIEIYIIPYTQPS 380 YGED+ Q+AEYA S+ +KI+LGRS K++ + K LVDKL+ + + +IYIIP TQPS Sbjct: 311 YGEDISQQLAEYANVSQATKIILGRSS-KRKSWLKPKLVDKLSEQIDSTDIYIIPDTQPS 369 Query: 381 FYKRLPLYARYPKLSLADTNKTIAILVVCTLIGIWFRYLGFLESNIITVYILGVLLSAIV 440 K+ S++D+ +T+ IL+ CT+IGI F Y F NII VYILGV ++A++ Sbjct: 370 KTKKHFKIKNEMSFSVSDSIRTVIILLFCTIIGIIFDYNHFSVVNIIIVYILGVQVNAVI 429 Query: 441 TKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPVTFLVMLAASFITSTLTMRVSEQ 500 TKGRVYS VS+++SVL+FNYFFTEP Y+L+A + GYPVTF++MLAA+ ITSTLT R+ EQ Sbjct: 430 TKGRVYSIVSALLSVLIFNYFFTEPRYTLHAIDPGYPVTFVIMLAAAIITSTLTKRIKEQ 489 Query: 501 ARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQMVKLLDRTVIFYSVQEGALSAPL 560 ARQ++Q+AYRTE+LLETS+KLQ+A A++ E+A Q+ KLL++ +I Y V+ L PL Sbjct: 490 ARQASQRAYRTEILLETSQKLQKASTESALLREIAIQINKLLEKPIIIYPVRVNKLDKPL 549 Query: 561 IFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATTDTFFGANCLYHAVRGGDTVFAVA 620 IF ++ + + + ER VA+WVLKN KRAG T++TF CLY AVRG V AV Sbjct: 550 IFNEDKRDNNESEWISKEERTVAEWVLKNQKRAGVTSNTFTNTKCLYLAVRGNGEVLAVI 609 Query: 621 AIVMEQEEPLEVFEKGLMIAMXXXXXXXXXXXXXXXXXXXISMQIQQEHLRANLLRSISH 680 IVM++E P++ FEK ++IA+ IS+++QQE +R NLLR+ISH Sbjct: 610 GIVMDKEAPMDNFEKSILIAVLAESALALEKEKFRVQEQIISLRMQQEQVRTNLLRAISH 669 Query: 681 DLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYDDSIWLIHLVENLLSISRIENGTL 740 DLRTPLTSISGNAG+L NS +L E+QK+ LY DIYDDSIWLI+LVENLLSI+R++ G+ Sbjct: 670 DLRTPLTSISGNAGVLKANSHILEEKQKQNLYNDIYDDSIWLINLVENLLSITRLDEGSS 729 Query: 741 NLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDELLMARMDSRLIVQVLINIVDNAIK 800 N+N Q +L++EVISEAL H++R S ++ I ++ DE L+ +DS+LI+QV+INIVDNAIK Sbjct: 730 NINMQPDLIDEVISEALRHIDRKSIEYNISMEIQDEDLIVNIDSQLIMQVIINIVDNAIK 789 Query: 801 YTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKARLFEMFFTADNIXXXXXXXXXXXX 860 YT GS I + A+QD V VEI D+G GI ++ K ++F+MF+TA+NI Sbjct: 790 YTPPGSKICIVAKQDMDSVCVEIKDNGEGIPDKEKDKIFDMFYTANNINADGRRGLGLGL 849 Query: 861 SLCKSIVNAHGGTIGVRDNVPKGTVFYFTLHAEEVNVHE 899 LC SI+ AH G + V+DN+PKG +F L EEV+++E Sbjct: 850 YLCMSIIQAHQGEMYVKDNIPKGAIFGLVLPIEEVDLNE 888 >C4IDW5.1 C4IDW5_CLOBU Sensor protein KdpD EC=2.7.13.3 Length = 896 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/882 (54%), Positives = 631/882 (71%), Gaps = 3/882 (0%) Query: 19 KTGQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGGFIETHARPDTLAMLEGLE 78 K ++ G+LKIF GYA G GKT AML+AAH+ ++ G DVV G+IE H R +TL +L GLE Sbjct: 17 KEHKKNGKLKIFFGYAAGVGKTFAMLEAAHKSKESGIDVVAGYIEPHTRVETLNLLNGLE 76 Query: 79 LVPPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAGCRHKKRYQDVEELLRAGI 138 ++P +K+ Y+ + EF++D AL+R P+LIL+D+LAH+N GCRH KRYQD++ELL GI Sbjct: 77 MLPNLKVDYKGISLNEFNIDGALERKPDLILVDELAHSNAVGCRHVKRYQDIKELLDNGI 136 Query: 139 HVYTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVELVDIEPNDLIDRLHKGKI 198 VYTT+NVQ IESL DIV SITG+ V+ERIPDSVFD+ADQ+ELVDIEP DLI RL++GKI Sbjct: 137 DVYTTVNVQHIESLNDIVASITGIIVKERIPDSVFDNADQIELVDIEPEDLIQRLNEGKI 196 Query: 199 YRDNADEQAMGQLFTKEKLTALREIALRNTASQLNRIAIQISEQAKKNDYDTKDHILVCL 258 YR + ++A+ FTKEKL ALREIALR TA +N+ I I + KN Y T++H+L+CL Sbjct: 197 YRTDQAKRALLNFFTKEKLVALREIALRRTADAVNK-KIDIERERTKNSYYTEEHLLICL 255 Query: 259 SSAASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNKTELRDNLRLAEQMGANIA 318 SS+ SN KVIR AARMA+AFHG FTALFVET T++ +N+ L NL+LAEQ+GA IA Sbjct: 256 SSSPSNAKVIRTAARMADAFHGLFTALFVETTDTKEFQDENRVRLERNLKLAEQLGARIA 315 Query: 319 TVYGEDVPGQIAEYAKTSRVSKIVLGRSPFKKRGY-AKSNLVDKLTTLLPNIEIYIIPYT 377 TVYG+D+ QI+EYAK S VSKIVLGRS KK + K LVDKLT + PNI+IYIIP Sbjct: 316 TVYGDDIAWQISEYAKLSGVSKIVLGRSTTKKGLFKTKKTLVDKLTEIAPNIDIYIIPDN 375 Query: 378 QPSFYKRLPLYARYPKLSLADTNKTIAILVVCTLIGIWFRYLGFLESNIITVYILGVLLS 437 ++ L A K + D KT IL + T++ + F G+ E+NIIT+YI GVLL+ Sbjct: 376 SKQKQTKIKLKANLYKFDMVDIAKTFGILFLSTILALIFFEFGYSEANIITIYIFGVLLT 435 Query: 438 AIVTKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPVTFLVMLAASFITSTLTMRV 497 +I T G+ + S+++VL FN+ FT+P ++ AY+ YPVTF VM +S +TS L +V Sbjct: 436 SITTSGKRCGILMSILAVLTFNFLFTDPRFTFQAYDKSYPVTFAVMFISSIVTSKLATKV 495 Query: 498 SEQARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQMVKLLDRTVIFYSVQEGALS 557 +A+QS +KAYRTEVLLETS+KLQ AK I ++ A Q KLLD+T+I Y ++G L+ Sbjct: 496 KLEAQQSTRKAYRTEVLLETSQKLQIAKSKEDIFNKTAYQTKKLLDKTIILYKSEKGVLA 555 Query: 558 APLIFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATTDTFFGANCLYHAVRGGDTVF 617 PL+F E + D Y E+AVA W LKN K AGATT+T GA CLY ++R + F Sbjct: 556 EPLVFKHENDK-DVLEYISEEEKAVAQWTLKNKKHAGATTNTLPGAKCLYLSIRNHEKAF 614 Query: 618 AVAAIVMEQEEPLEVFEKGLMIAMXXXXXXXXXXXXXXXXXXXISMQIQQEHLRANLLRS 677 V I +E++E LE FEK L+IA+ I ++ +QE LR+NLLRS Sbjct: 615 GVIGIPLEKDEFLEAFEKNLLIAVLGESALALEKEEINQSKNKIYIKAEQEKLRSNLLRS 674 Query: 678 ISHDLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYDDSIWLIHLVENLLSISRIEN 737 ISHDLRTPLTSISGNAGIL+ NS +LSEE+KK LY DIYDDS+WLI+LVENLLSI+RIEN Sbjct: 675 ISHDLRTPLTSISGNAGILINNSEILSEEKKKSLYLDIYDDSMWLINLVENLLSITRIEN 734 Query: 738 GTLNLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDELLMARMDSRLIVQVLINIVDN 797 GT+ +N + EL+EEVI EA+ H+NR +H I+T ++D+LLMA+MDS LI+QV+INI++N Sbjct: 735 GTMKINTEPELVEEVIEEAICHINRKVSEHKINTVIEDDLLMAKMDSGLIIQVIINIINN 794 Query: 798 AIKYTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKARLFEMFFTADNIXXXXXXXXX 857 AIKYT + S IT+++++ + ++EISD+G GI+EE+K +LF+MFFT +N Sbjct: 795 AIKYTPKDSIITITSKRKNNMAVIEISDNGKGINEESKEKLFDMFFTDNNKFGDGRRGLG 854 Query: 858 XXXSLCKSIVNAHGGTIGVRDNVPKGTVFYFTLHAEEVNVHE 899 +LCKSI++AH G I VRDN P G +F FTLH EEV ++E Sbjct: 855 LGLALCKSIIDAHEGCIYVRDNKPNGAIFGFTLHIEEVKINE 896 >B1QXG5.1 B1QXG5_CLOBU Sensor protein EC=2.7.13.3 Length = 896 Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/882 (54%), Positives = 631/882 (71%), Gaps = 3/882 (0%) Query: 19 KTGQRRGRLKIFIGYAPGAGKTCAMLKAAHEEQKEGTDVVGGFIETHARPDTLAMLEGLE 78 K ++ G+LKIF GYA G GKT AML+AAH+ ++ G DVV G+IE H R +TL +L GLE Sbjct: 17 KEHKKNGKLKIFFGYAAGVGKTFAMLEAAHKSKESGIDVVAGYIEPHTRVETLNLLNGLE 76 Query: 79 LVPPIKMSYEASVIPEFDLDRALQRSPELILLDDLAHANTAGCRHKKRYQDVEELLRAGI 138 ++P +K+ Y+ + EF++D AL+R P+LIL+D+LAH+N GCRH KRYQD++ELL GI Sbjct: 77 MLPNLKVDYKGISLNEFNIDGALERKPDLILVDELAHSNAVGCRHVKRYQDIKELLDNGI 136 Query: 139 HVYTTINVQQIESLTDIVYSITGMTVQERIPDSVFDSADQVELVDIEPNDLIDRLHKGKI 198 VYTT+NVQ IESL DIV SITG+ V+ERIPDSVFD+ADQ+ELVDIEP DLI RL++GKI Sbjct: 137 DVYTTVNVQHIESLNDIVASITGIIVKERIPDSVFDNADQIELVDIEPEDLIQRLNEGKI 196 Query: 199 YRDNADEQAMGQLFTKEKLTALREIALRNTASQLNRIAIQISEQAKKNDYDTKDHILVCL 258 YR + ++A+ FTKEKL ALREIALR TA +N+ I I + KN Y T++H+L+CL Sbjct: 197 YRTDQAKRALLNFFTKEKLVALREIALRRTADAVNK-KIDIERERTKNSYYTEEHLLICL 255 Query: 259 SSAASNKKVIRAAARMAEAFHGQFTALFVETPQTQKLTQKNKTELRDNLRLAEQMGANIA 318 SS+ SN KVIR AARMA+AFHG FTALFVET T++ +N+ L NL+LAEQ+GA IA Sbjct: 256 SSSPSNAKVIRTAARMADAFHGLFTALFVETTDTKEFQDENRVRLERNLKLAEQLGARIA 315 Query: 319 TVYGEDVPGQIAEYAKTSRVSKIVLGRSPFKKRGY-AKSNLVDKLTTLLPNIEIYIIPYT 377 TVYG+D+ QI+EYAK S VSKIVLGRS KK + K LVDKLT + PNI+IYIIP Sbjct: 316 TVYGDDIAWQISEYAKLSGVSKIVLGRSTTKKGLFKTKKTLVDKLTEIAPNIDIYIIPDN 375 Query: 378 QPSFYKRLPLYARYPKLSLADTNKTIAILVVCTLIGIWFRYLGFLESNIITVYILGVLLS 437 ++ L A K + D KT IL + T++ + F G+ E+NIIT+YI GVLL+ Sbjct: 376 SKQKQTKIKLKANLYKFDMVDIAKTFGILFLSTILALIFFEFGYSEANIITIYIFGVLLT 435 Query: 438 AIVTKGRVYSAVSSVMSVLVFNYFFTEPYYSLNAYEAGYPVTFLVMLAASFITSTLTMRV 497 +I T G+ + S+++VL FN+ FT+P ++ AY+ YPVTF VM +S +TS L +V Sbjct: 436 SITTSGKRCGILMSILAVLTFNFLFTDPRFTFQAYDKSYPVTFAVMFISSIVTSKLATKV 495 Query: 498 SEQARQSAQKAYRTEVLLETSRKLQQAKDSPAIIDEMARQMVKLLDRTVIFYSVQEGALS 557 +A+QS +KAYRTEVLLETS+KLQ AK I ++ A Q KLLD+T+I Y ++G L+ Sbjct: 496 KLEAQQSTRKAYRTEVLLETSQKLQIAKSKEDIFNKTAYQTKKLLDKTIILYKSEKGVLA 555 Query: 558 APLIFPKEGSEVDPHTYTGSNERAVADWVLKNNKRAGATTDTFFGANCLYHAVRGGDTVF 617 PL+F E + D Y E+AVA W LKN K AGATT+T GA CLY ++R + F Sbjct: 556 EPLVFKHENDK-DVLEYISEEEKAVAQWTLKNKKHAGATTNTLPGAKCLYLSIRNHEKAF 614 Query: 618 AVAAIVMEQEEPLEVFEKGLMIAMXXXXXXXXXXXXXXXXXXXISMQIQQEHLRANLLRS 677 V I +E++E LE FEK L+IA+ I ++ +QE LR+NLLRS Sbjct: 615 GVIGIPLEKDEFLEAFEKNLLIAVLGESALALEKEEINQSKNKIYIKAEQEKLRSNLLRS 674 Query: 678 ISHDLRTPLTSISGNAGILVGNSGVLSEEQKKGLYTDIYDDSIWLIHLVENLLSISRIEN 737 ISHDLRTPLTSISGNAGIL+ NS +LSEE+KK LY DIYDDS+WLI+LVENLLSI+RIEN Sbjct: 675 ISHDLRTPLTSISGNAGILINNSEILSEEKKKSLYLDIYDDSMWLINLVENLLSITRIEN 734 Query: 738 GTLNLNFQAELMEEVISEALLHVNRNSEKHVIHTKLDDELLMARMDSRLIVQVLINIVDN 797 GT+ +N + EL+EEVI EA+ H+NR +H I+T ++D+LLMA+MDS LI+QV+INI++N Sbjct: 735 GTMKINTEPELVEEVIEEAICHINRKVSEHKINTVIEDDLLMAKMDSGLIIQVIINIINN 794 Query: 798 AIKYTQQGSHITVSARQDGHRVIVEISDDGPGISEEAKARLFEMFFTADNIXXXXXXXXX 857 AIKYT + S IT+++++ + ++EISD+G GI+EE+K +LF+MFFT +N Sbjct: 795 AIKYTPKDSIITITSKRKNNMAVIEISDNGKGINEESKEKLFDMFFTDNNKFGDGRRGLG 854 Query: 858 XXXSLCKSIVNAHGGTIGVRDNVPKGTVFYFTLHAEEVNVHE 899 +LCKSI++AH G I VRDN P G +F FTLH EEV ++E Sbjct: 855 LGLALCKSIIDAHEGCIYVRDNKPNGAIFGFTLHIEEVKINE 896 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,752,693,004 Number of extensions: 186884926 Number of successful extensions: 641041 Number of sequences better than 1.0e-05: 22352 Number of HSP's gapped: 609754 Number of HSP's successfully gapped: 22551 Length of query: 899 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 754 Effective length of database: 1,694,649,028 Effective search space: 1277765367112 Effective search space used: 1277765367112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 136 (57.0 bits)