BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0034.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9E1P1.1 B9E1P1_CLOK1 Putative uncharacterized protein 387 e-106 A5N881.1 A5N881_CLOK5 KdpE 387 e-106 B2TMJ5.1 B2TMJ5_CLOBB KDP operon transcriptional regulatory prot... 345 2e-93 B2V2P6.1 B2V2P6_CLOBA KDP operon transcriptional regulatory prot... 343 6e-93 C4IDW4.1 C4IDW4_CLOBU KDP operon transcriptional regulatory prot... 331 3e-89 >B9E1P1.1 B9E1P1_CLOK1 Putative uncharacterized protein Length = 234 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/227 (82%), Positives = 209/227 (92%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VEDDK IRKLITTTLETQGY+YHTAETG ASILEAVS QP+++ILDLGLPDMDGV+IIKK Sbjct: 5 VEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQPDIIILDLGLPDMDGVEIIKK 64 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 +RTWSN+PIIVVSARSEDRDKI++LDAGADDYLTKPFSVEELLARLRVSLRRIRYDS KL Sbjct: 65 VRTWSNVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIRYDSKKL 124 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 LKDA+ F+N LKIDY AGCVW+ +E+HLTP EYKL+CLLAKNVGKVLTHN+ILHEIWG Sbjct: 125 LKDAAIFINSGLKIDYEAGCVWLDGDEVHLTPIEYKLICLLAKNVGKVLTHNFILHEIWG 184 Query: 181 SPTVDIPSLRVFMATLRKKIEKTPVQFKYIQTHIGIGYRMLQVGDDS 227 + + DI +LRVFMATLRKKIEK P + KYIQTHIGIGYRML+V DDS Sbjct: 185 NYSNDISALRVFMATLRKKIEKEPSKPKYIQTHIGIGYRMLRVVDDS 231 >A5N881.1 A5N881_CLOK5 KdpE Length = 238 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 188/227 (82%), Positives = 209/227 (92%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VEDDK IRKLITTTLETQGY+YHTAETG ASILEAVS QP+++ILDLGLPDMDGV+IIKK Sbjct: 9 VEDDKAIRKLITTTLETQGYRYHTAETGGASILEAVSRQPDIIILDLGLPDMDGVEIIKK 68 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 +RTWSN+PIIVVSARSEDRDKI++LDAGADDYLTKPFSVEELLARLRVSLRRIRYDS KL Sbjct: 69 VRTWSNVPIIVVSARSEDRDKIDSLDAGADDYLTKPFSVEELLARLRVSLRRIRYDSKKL 128 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 LKDA+ F+N LKIDY AGCVW+ +E+HLTP EYKL+CLLAKNVGKVLTHN+ILHEIWG Sbjct: 129 LKDAAIFINSGLKIDYEAGCVWLDGDEVHLTPIEYKLICLLAKNVGKVLTHNFILHEIWG 188 Query: 181 SPTVDIPSLRVFMATLRKKIEKTPVQFKYIQTHIGIGYRMLQVGDDS 227 + + DI +LRVFMATLRKKIEK P + KYIQTHIGIGYRML+V DDS Sbjct: 189 NYSNDISALRVFMATLRKKIEKEPSKPKYIQTHIGIGYRMLRVVDDS 235 >B2TMJ5.1 B2TMJ5_CLOBB KDP operon transcriptional regulatory protein KdpE Length = 235 Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 168/228 (73%), Positives = 198/228 (86%), Gaps = 3/228 (1%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VEDDK +R LIT TLET+ YKYH AE GEA+I EAVS P+++ILDLGLPDMDG++IIK+ Sbjct: 9 VEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDMDGIEIIKR 68 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 IRTWSN+PIIVVSARSEDRDKIEALD GADDYLTKPFSVEELLARLRVSLRRI Y + Sbjct: 69 IRTWSNVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINYVNSGQ 128 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 K+++ F+NG+LKIDYAA CV+I +EE+HLTP EY+L+CLLAKNVG+VLTHN+IL E+WG Sbjct: 129 GKNSNLFINGDLKIDYAARCVFIKDEEVHLTPIEYRLICLLAKNVGRVLTHNFILKEVWG 188 Query: 181 S--PTVDIPSLRVFMATLRKKIEKTPVQFKYIQTHIGIGYRMLQVGDD 226 + P D PSLRVFMATLRKKIE+ P + KYIQTHIGIGYRML++ +D Sbjct: 189 NTLPN-DTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGYRMLRITED 235 >B2V2P6.1 B2V2P6_CLOBA KDP operon transcriptional regulatory protein KdpE Length = 235 Score = 343 bits (880), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 168/228 (73%), Positives = 198/228 (86%), Gaps = 3/228 (1%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VEDDK +R LIT TLET+ YKYH AE GEA+I EAVS P+++ILDLGLPDMDG++IIKK Sbjct: 9 VEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDMDGIEIIKK 68 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 IRTWSN+PIIVVSARSEDRDKIEALD GADDYLTKPFSVEELLARLRVSLRRI Y + Sbjct: 69 IRTWSNIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLRRINYVNGGQ 128 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 ++++ F+NG+LK+DYAA CV+I +EEIHLTP EY+L+CLLAKNVG+VLTHN+IL E+WG Sbjct: 129 GENSNLFINGDLKLDYAARCVFIKDEEIHLTPIEYRLICLLAKNVGRVLTHNFILKEVWG 188 Query: 181 S--PTVDIPSLRVFMATLRKKIEKTPVQFKYIQTHIGIGYRMLQVGDD 226 + P D PSLRVFMATLRKKIE+ P + KYIQTHIGIGYRML++ +D Sbjct: 189 NTLPN-DTPSLRVFMATLRKKIEEKPSKPKYIQTHIGIGYRMLRITED 235 >C4IDW4.1 C4IDW4_CLOBU KDP operon transcriptional regulatory protein KdpE Length = 239 Score = 331 bits (849), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 161/229 (70%), Positives = 198/229 (86%), Gaps = 3/229 (1%) Query: 1 VEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSSQPELMILDLGLPDMDGVDIIKK 60 VEDDK IR LITTTLET+ YK+H AE G +ILEA+S +P+++ILDLGLPD+DGV+II K Sbjct: 9 VEDDKAIRNLITTTLETKDYKFHIAEDGAKAILEAISYKPDVIILDLGLPDIDGVEIISK 68 Query: 61 IRTWSNLPIIVVSARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVSLRRIRYDSDKL 120 IRTWSN+PIIVVSARS+D DKIEALD GADDYLTKPFSV+ELLARLRV+LRR+ Y+++ Sbjct: 69 IRTWSNVPIIVVSARSDDSDKIEALDNGADDYLTKPFSVDELLARLRVALRRVNYNNEIK 128 Query: 121 LKDASSFVNGNLKIDYAAGCVWIGEEEIHLTPSEYKLLCLLAKNVGKVLTHNYILHEIWG 180 + S+F+NG+LKIDY + V+IGE+EIHLTP EYKL+CLLAKN+GKVLTHN+IL EIWG Sbjct: 129 DSNGSTFLNGDLKIDYISRGVFIGEKEIHLTPIEYKLICLLAKNLGKVLTHNFILKEIWG 188 Query: 181 S--PTVDIPSLRVFMATLRKKIEKTPVQFKYIQTHIGIGYRMLQVGDDS 227 + P D PSLRVFMATLRKKIE+TP + KYIQTH+GIGYRM+++ + + Sbjct: 189 NVLPN-DTPSLRVFMATLRKKIEETPSRPKYIQTHVGIGYRMIKIDNKT 236 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,359,384,826 Number of extensions: 54760388 Number of successful extensions: 243752 Number of sequences better than 1.0e-05: 29083 Number of HSP's gapped: 222396 Number of HSP's successfully gapped: 29265 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)