BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0027.p (298 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A5MFH8.1 A5MFH8_STRPN Transcriptional activator, Rgg/GadR/MutR f... 77 2e-12 Q8DNT6.1 Q8DNT6_STRR6 Putative uncharacterized protein 75 6e-12 Q04J65.1 Q04J65_STRP2 Transcriptional activator, Rgg/GadR/MutR f... 75 6e-12 C1CFS7.1 C1CFS7_STRZJ Transcriptional activator, Rgg/GadR/MutR f... 75 6e-12 B8ZMH1.1 B8ZMH1_STRPJ Putative DNA-binding protein 75 6e-12 >A5MFH8.1 A5MFH8_STRPN Transcriptional activator, Rgg/GadR/MutR family protein Length = 283 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/209 (24%), Positives = 97/209 (46%), Gaps = 15/209 (7%) Query: 6 GETVKRIRKSKGMNQSDLAGGIMSRSNLSRFEGGKYFPGYDKLILILDKLEMSLEELLFL 65 G+ K IRKSKG+ Q D+ G ++ R+ L+ E GK P ++ ++ +L++++MSL E ++ Sbjct: 6 GQIFKEIRKSKGLTQQDVCGQVIHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKYI 65 Query: 66 HHDYAQPVKRTLHLTLVEAGNRYEFEKVR---DVSYECHMLYKTTR----TEAFXXXXXX 118 ++Y +R + +VE+ N F+ R +++ +C KT + Sbjct: 66 CNEYHPSKRRDI---IVESQNPSTFQDTRKMVELTEKCQKYLKTHHDVPIQNIYRHTKIV 122 Query: 119 XXXXXXXXXXXDQIRQLS-EIADYIKPYLLGVDTWYLYEXXXXXXXXXXXXSDDAIFFGL 177 ++ LS EI DY++P +DTWY+ + S++ Sbjct: 123 TELRTKGFKNNHVLKDLSEEIWDYLEP----MDTWYISDLKLLGTILFFFPSENLPLLID 178 Query: 178 RAVQEFNKYHCFAESRTIQQHLLQNISNI 206 R ++ KY F E++ L N+S + Sbjct: 179 RIMKTIEKYKYFRETKVFLSSFLANLSTV 207 >Q8DNT6.1 Q8DNT6_STRR6 Putative uncharacterized protein Length = 283 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 15/209 (7%) Query: 6 GETVKRIRKSKGMNQSDLAGGIMSRSNLSRFEGGKYFPGYDKLILILDKLEMSLEELLFL 65 G+ K IRKSKG+ Q D+ G ++ R+ L+ E GK P ++ ++ +L++++MSL E ++ Sbjct: 6 GQIFKEIRKSKGLTQQDVCGQVIHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKYI 65 Query: 66 HHDYAQPVKRTLHLTLVEAGNRYEFEKVR---DVSYECHMLYKTTR----TEAFXXXXXX 118 ++Y +R + +VE+ N F+ R +++ +C KT + Sbjct: 66 CNEYHPSKRRDI---IVESQNPSTFQDTRKMVELTEKCQKYLKTHHDVPIQNIYRHTKIV 122 Query: 119 XXXXXXXXXXXDQIRQL-SEIADYIKPYLLGVDTWYLYEXXXXXXXXXXXXSDDAIFFGL 177 ++ L EI DY++P +DTWY+ + S++ Sbjct: 123 TELRTKGFKNNHVLKDLYEEIWDYLEP----MDTWYISDLKLLGTILFFFPSENLPLLID 178 Query: 178 RAVQEFNKYHCFAESRTIQQHLLQNISNI 206 R ++ KY F E++ L N+S + Sbjct: 179 RIMKTIEKYKYFRETKAFLSSFLANLSTV 207 >Q04J65.1 Q04J65_STRP2 Transcriptional activator, Rgg/GadR/MutR family protein Length = 283 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 15/209 (7%) Query: 6 GETVKRIRKSKGMNQSDLAGGIMSRSNLSRFEGGKYFPGYDKLILILDKLEMSLEELLFL 65 G+ K IRKSKG+ Q D+ G ++ R+ L+ E GK P ++ ++ +L++++MSL E ++ Sbjct: 6 GQIFKEIRKSKGLTQQDVCGQVIHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKYI 65 Query: 66 HHDYAQPVKRTLHLTLVEAGNRYEFEKVR---DVSYECHMLYKTTR----TEAFXXXXXX 118 ++Y +R + +VE+ N F+ R +++ +C KT + Sbjct: 66 CNEYHPSKRRDI---IVESQNPSTFQDTRKMVELTEKCQKYLKTHHDVPIQNIYRHTKIV 122 Query: 119 XXXXXXXXXXXDQIRQL-SEIADYIKPYLLGVDTWYLYEXXXXXXXXXXXXSDDAIFFGL 177 ++ L EI DY++P +DTWY+ + S++ Sbjct: 123 TELRTKGFKNNHVLKDLYEEIWDYLEP----MDTWYISDLKLLGTILFFFPSENLPLLID 178 Query: 178 RAVQEFNKYHCFAESRTIQQHLLQNISNI 206 R ++ KY F E++ L N+S + Sbjct: 179 RIMKTIEKYKYFRETKAFLSSFLANLSTV 207 >C1CFS7.1 C1CFS7_STRZJ Transcriptional activator, Rgg/GadR/MutR family, C-domain protein Length = 283 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 15/209 (7%) Query: 6 GETVKRIRKSKGMNQSDLAGGIMSRSNLSRFEGGKYFPGYDKLILILDKLEMSLEELLFL 65 G+ K IRKSKG+ Q D+ G ++ R+ L+ E GK P ++ ++ +L++++MSL E ++ Sbjct: 6 GQIFKEIRKSKGLTQQDVCGQVIHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKYI 65 Query: 66 HHDYAQPVKRTLHLTLVEAGNRYEFEKVR---DVSYECHMLYKTTR----TEAFXXXXXX 118 ++Y +R + +VE+ N F+ R +++ +C KT + Sbjct: 66 CNEYHPSKRRDI---IVESQNPSTFQDTRKMVELTEKCQKYLKTHHDVPIQNIYRHTKIV 122 Query: 119 XXXXXXXXXXXDQIRQL-SEIADYIKPYLLGVDTWYLYEXXXXXXXXXXXXSDDAIFFGL 177 ++ L EI DY++P +DTWY+ + S++ Sbjct: 123 TELRTKGFKNNHVLKDLYEEIWDYLEP----MDTWYISDLKLLGTILFFFPSENLPLLID 178 Query: 178 RAVQEFNKYHCFAESRTIQQHLLQNISNI 206 R ++ KY F E++ L N+S + Sbjct: 179 RIMKTIEKYKYFRETKAFLSSFLANLSTV 207 >B8ZMH1.1 B8ZMH1_STRPJ Putative DNA-binding protein Length = 283 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 15/209 (7%) Query: 6 GETVKRIRKSKGMNQSDLAGGIMSRSNLSRFEGGKYFPGYDKLILILDKLEMSLEELLFL 65 G+ K IRKSKG+ Q D+ G ++ R+ L+ E GK P ++ ++ +L++++MSL E ++ Sbjct: 6 GQIFKEIRKSKGLTQQDVCGQVIHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKYI 65 Query: 66 HHDYAQPVKRTLHLTLVEAGNRYEFEKVR---DVSYECHMLYKTTR----TEAFXXXXXX 118 ++Y +R + +VE+ N F+ R +++ +C KT + Sbjct: 66 CNEYHPSKRRDI---IVESQNPSTFQDTRKMVELTEKCQKYLKTHHDVPIQNIYRHTKIV 122 Query: 119 XXXXXXXXXXXDQIRQL-SEIADYIKPYLLGVDTWYLYEXXXXXXXXXXXXSDDAIFFGL 177 ++ L EI DY++P +DTWY+ + S++ Sbjct: 123 TELRTKGFKNNHVLKDLYEEIWDYLEP----MDTWYISDLKLLGTILFFFPSENLPLLID 178 Query: 178 RAVQEFNKYHCFAESRTIQQHLLQNISNI 206 R ++ KY F E++ L N+S + Sbjct: 179 RIMKTIEKYKYFRETKAFLSSFLANLSTV 207 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.139 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,468,937,969 Number of extensions: 50360403 Number of successful extensions: 132384 Number of sequences better than 1.0e-05: 65 Number of HSP's gapped: 132545 Number of HSP's successfully gapped: 65 Length of query: 298 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 163 Effective length of database: 1,788,859,178 Effective search space: 291584046014 Effective search space used: 291584046014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)