BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0026.p (234 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65CY0.1 Q65CY0_BACLD YxdJ 359 1e-97 C3BL00.1 C3BL00_9BACI DNA-binding response regulator 312 1e-83 C2QCB6.1 C2QCB6_BACCE DNA-binding response regulator 312 2e-83 C3AWP9.1 C3AWP9_BACMY DNA-binding response regulator 312 2e-83 C1EVT0.1 C1EVT0_BACC3 DNA-binding response regulator 310 6e-83 >Q65CY0.1 Q65CY0_BACLD YxdJ Length = 235 Score = 359 bits (921), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 170/232 (73%), Positives = 196/232 (84%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M ++MIVEDDPKIADLL S + KYGY+V V+DF +V+ EF P+LVLLD+NLPS+DG Sbjct: 1 MQKVMIVEDDPKIADLLKSHIVKYGYNVHVVKDFDRVMDEFRSTAPDLVLLDINLPSFDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 YYWCRQIR S CPVLFISAR GEMDQ+MALENGGDD+ITKPFH+ IV+AKI S LRRAY Sbjct: 61 YYWCRQIRQESICPVLFISARTGEMDQVMALENGGDDFITKPFHAEIVMAKIRSQLRRAY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 GEYAAK EE +LEKEGL LYPERLEL + ALT+KE+D+IESLMER+PR++ RE LL Sbjct: 121 GEYAAKAEERLLEKEGLRLYPERLELTFAGQTAALTKKEADIIESLMERHPRISGREDLL 180 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRLNISWAEG 234 KLWD QA+VDENTLNVNI RVRKKFQELGIEDAV TVRG+GYRLN+SW + Sbjct: 181 AKLWDDQAYVDENTLNVNITRVRKKFQELGIEDAVETVRGAGYRLNVSWVKA 232 >C3BL00.1 C3BL00_9BACI DNA-binding response regulator Length = 235 Score = 312 bits (800), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 147/232 (63%), Positives = 182/232 (78%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M +IMIVEDDPKIA+LL S ++KYGY + + DF +VL F Q +PELVLLD+NLPS+DG Sbjct: 1 MVKIMIVEDDPKIAELLSSYIEKYGYQAIVIVDFQRVLDIFSQEKPELVLLDINLPSFDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 YYWCRQIR ISTCP+LFISAR+G MDQ+MALENGGDDYI KPFH +V+AK+ S LRRAY Sbjct: 61 YYWCRQIRAISTCPILFISAREGTMDQVMALENGGDDYIPKPFHYEVVMAKVRSQLRRAY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 G+YA K EE M+E++GL L+PERL L + +TR E+ L+E LM+ YPRV SRE LL Sbjct: 121 GDYAPKIEERMIEQQGLTLFPERLVLQLRNQEIDVTRNEAILLEMLMKNYPRVVSREVLL 180 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRLNISWAEG 234 KLWD + +VD+NTL+VN RVRKK Q LGI+ A+ T+R GYRL+I+W G Sbjct: 181 NKLWDSELYVDDNTLSVNTTRVRKKLQALGIQGAIETIRSVGYRLHITWEIG 232 >C2QCB6.1 C2QCB6_BACCE DNA-binding response regulator Length = 235 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 146/232 (62%), Positives = 183/232 (78%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M +IMIVEDD KIA+LL + V KYGY+ + V DF VL F + +PELV+LD+NLPS+DG Sbjct: 1 MVKIMIVEDDMKIAELLSTHVAKYGYEGIIVSDFQNVLNIFLEEQPELVILDINLPSFDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 YYWCRQIR +STCP+LFISAR+G MDQ+MALENGGDD+I+KPFH +V+AKI SHLRRAY Sbjct: 61 YYWCRQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 G+YA K EE M+E+ GL LYPERL L + +TR E+ L+E+LM+ YPRV SRE LL Sbjct: 121 GDYAPKVEERMVEQHGLCLYPERLVLKLKNQEIDITRNEAILLETLMKNYPRVVSREVLL 180 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRLNISWAEG 234 KLWD +++VD+NTL+VN RVRKK + L IEDA+ T+R GYRL+I+W G Sbjct: 181 NKLWDSESYVDDNTLSVNTTRVRKKLKTLHIEDAIETIRSVGYRLHITWDTG 232 >C3AWP9.1 C3AWP9_BACMY DNA-binding response regulator Length = 235 Score = 312 bits (799), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 147/232 (63%), Positives = 183/232 (78%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M +IMIVEDDPKIA+LL S ++KYGY + + DF +VL F Q +P+LVLLD+NLPS+DG Sbjct: 1 MVKIMIVEDDPKIAELLSSYIEKYGYQAIVIVDFQRVLDMFLQEKPDLVLLDINLPSFDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 YYWCRQIR ISTCP+LFISAR+G MDQ+MALENGGDDYI KPFH +V+AKI S LRRAY Sbjct: 61 YYWCRQIRAISTCPILFISAREGTMDQVMALENGGDDYIPKPFHYEVVMAKIRSQLRRAY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 G+YA K EE M+E++GL L+PERL L + +TR E+ L+E LM+ YPRV SRE LL Sbjct: 121 GDYAPKIEERMIEQQGLTLFPERLVLQLRNQEIDVTRNEAILLEMLMKNYPRVVSREVLL 180 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRLNISWAEG 234 KLWD +++VD+NTL+VN RVRKK Q LGI+ A+ T+R GYRL+I+W G Sbjct: 181 NKLWDSESYVDDNTLSVNTTRVRKKLQALGIQGAIETIRSVGYRLHITWEIG 232 >C1EVT0.1 C1EVT0_BACC3 DNA-binding response regulator Length = 235 Score = 310 bits (794), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 146/232 (62%), Positives = 183/232 (78%) Query: 3 MFRIMIVEDDPKIADLLLSAVKKYGYDVVKVEDFTQVLQEFEQIRPELVLLDVNLPSYDG 62 M +IMIVEDD KIA+LL + V KYGY+ + V DF VL F + +PELVLLD+NLPS+DG Sbjct: 1 MVKIMIVEDDMKIAELLSTHVAKYGYEGIIVSDFQNVLNIFLEEQPELVLLDINLPSFDG 60 Query: 63 YYWCRQIRNISTCPVLFISARDGEMDQIMALENGGDDYITKPFHSGIVLAKIHSHLRRAY 122 YYWCRQIR +STCP+LFISAR+G MDQ+MALENGGDD+I+KPFH +V+AKI SHLRRAY Sbjct: 61 YYWCRQIRGVSTCPILFISAREGTMDQVMALENGGDDFISKPFHYEVVMAKIRSHLRRAY 120 Query: 123 GEYAAKREELMLEKEGLVLYPERLELLYGQAVVALTRKESDLIESLMERYPRVASREALL 182 G+YA K E+ M+E++GL LYPERL L + +TR E+ L+E LM+ YPRV SRE LL Sbjct: 121 GDYAPKVEDRMVEQQGLCLYPERLVLKLRNQEIDITRNEAILLEMLMKNYPRVVSREVLL 180 Query: 183 EKLWDPQAFVDENTLNVNIARVRKKFQELGIEDAVLTVRGSGYRLNISWAEG 234 KLWD +++VD+NTL+VN RVRKK + L IEDA+ T+R GYRL+I+W G Sbjct: 181 NKLWDSESYVDDNTLSVNTTRVRKKLKTLQIEDAIETIRSVGYRLHITWDTG 232 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,361,329,309 Number of extensions: 53920500 Number of successful extensions: 241699 Number of sequences better than 1.0e-05: 21711 Number of HSP's gapped: 223519 Number of HSP's successfully gapped: 21777 Length of query: 234 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 103 Effective length of database: 1,826,543,238 Effective search space: 188133953514 Effective search space used: 188133953514 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)