BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0025.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65CY1.1 Q65CY1_BACLD Sensor protein EC=2.7.13.3 311 4e-83 Q737N0.1 Q737N0_BACC1 Sensor protein EC=2.7.13.3 274 6e-72 Q6HIC1.1 Q6HIC1_BACHK Sensor protein EC=2.7.13.3 274 7e-72 B5UZF2.1 B5UZF2_BACCE Sensor protein EC=2.7.13.3 274 8e-72 C3H1F7.1 C3H1F7_BACTU Putative uncharacterized protein 274 9e-72 >Q65CY1.1 Q65CY1_BACLD Sensor protein EC=2.7.13.3 Length = 335 Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 158/299 (52%), Positives = 211/299 (70%), Gaps = 6/299 (2%) Query: 1 MKLFIREHALLLAVQMVQFGAMLSIYWFDGYRNLPTALYSVFIGFFFLSCXXXXXXXXXX 60 MKLF +EH LL+AVQ +QF MLS+YW DGY+++ A Y+VF+GFFFL Sbjct: 1 MKLFFKEHYLLIAVQALQFITMLSVYWLDGYQHIRPAFYAVFLGFFFLGFYLFYHYYTRR 60 Query: 61 XXXXXXXXPLETLDESFQKIEN--NPVSKALEQLLHTQYRHYQQQLTAVKLQQEQHLTFI 118 LE+LD++F++ +P+S+ALEQLL +QY+ Y+Q+L ++L Q++HLTF+ Sbjct: 61 KFYKRMTSGLESLDDTFRQSNQPQSPLSEALEQLLKSQYKQYRQELKKLELGQKEHLTFM 120 Query: 119 DQWVHQMKTPLSVIELTVQNMDEPEFASIREELERMRGGLHTVLYMARLRAFEKDFHIKP 178 DQWVHQMKTPLSVIELT QN+DEPE +SIREE ERM+ GL+T+LYMARLR E+DF IKP Sbjct: 121 DQWVHQMKTPLSVIELTAQNLDEPESSSIREETERMKTGLNTILYMARLRTIEQDFRIKP 180 Query: 179 VVLPKLIGEVVHDHKRLFIRNRIFPEVKAASPGITAQTDEKWLFFMLSQIINNAIKYSAA 238 V L ++ EV ++KR +IR++++P+ K GIT +TDEKWLFF++SQ +NNA+KYSA Sbjct: 181 VALADIVHEVNRENKRFYIRSQVYPKFKEIKKGITVETDEKWLFFIISQFVNNAVKYSA- 239 Query: 239 KNTGGGQKITVSCYLRGPDAVIEVKDQGIGIQKSDLKRVFDPFFTGDNGRGLRXXXVYG 297 G + +S Y +AV+EV D G GI +D KRVFDPFFTG+NGR R G Sbjct: 240 ---GKSNTVIISVYENDSEAVLEVADFGAGIPDTDQKRVFDPFFTGENGRRFRESTGMG 295 >Q737N0.1 Q737N0_BACC1 Sensor protein EC=2.7.13.3 Length = 334 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 135/303 (44%), Positives = 192/303 (63%), Gaps = 5/303 (1%) Query: 1 MKLFIREHALLLAVQMVQFGAMLSIYWFDGYRNLPTALYSVFIGFFFLSCXXXXXXXXXX 60 ++LFIR+H L+ +Q A+ +YWFDG+ + TALY++F+G FF+ Sbjct: 9 IRLFIRDHIPLICFTAIQLLAIFLVYWFDGHNRIATALYAMFLGAFFMVGYLLFRYYTHR 68 Query: 61 XXXXXXXXPLETLDESFQKIENNPVSKALEQLLHTQYRHYQQQLTAVKLQQEQHLTFIDQ 120 P+++LDES QK + +S AL+ LL QYRHYQ QL + + HLTF++Q Sbjct: 69 SFYERLANPMQSLDESVQKSDFAAISAALQDLLEVQYRHYQNQLQIQERKNNDHLTFMNQ 128 Query: 121 WVHQMKTPLSVIELTVQNMDEPEFASIREELERMRGGLHTVLYMARLRAFEKDFHIKPVV 180 W+HQMKTPLSVIEL Q+ EP F SI EE +R++ GL LY+ARL AF +DF+++ V Sbjct: 129 WIHQMKTPLSVIELITQDEVEPRFESINEETDRLKKGLEMALYVARLEAFTQDFYVERVQ 188 Query: 181 LPKLIGEVVHDHKRLFIRNRIFPEVKAASPGITAQTDEKWLFFMLSQIINNAIKYSAAKN 240 L K++ + VH+HKR FIRN ++PE+K IT ++D KWL F++ QI++NAIKYS Sbjct: 189 LHKIVNDSVHEHKRFFIRNFVYPELK-IDKDITVESDAKWLQFLIGQILSNAIKYS---- 243 Query: 241 TGGGQKITVSCYLRGPDAVIEVKDQGIGIQKSDLKRVFDPFFTGDNGRGLRXXXVYGNGA 300 +G +KI V G + ++E+ D G+GI K DL RVF PFFTG+NGR + G Sbjct: 244 SGSREKIRVRACKEGNNVILEIADNGVGIXKQDLPRVFKPFFTGENGRDFKESTGMGLYL 303 Query: 301 VFD 303 V++ Sbjct: 304 VYE 306 >Q6HIC1.1 Q6HIC1_BACHK Sensor protein EC=2.7.13.3 Length = 334 Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 134/303 (44%), Positives = 193/303 (63%), Gaps = 5/303 (1%) Query: 1 MKLFIREHALLLAVQMVQFGAMLSIYWFDGYRNLPTALYSVFIGFFFLSCXXXXXXXXXX 60 ++LFIR+H L+ ++Q ++ +YWFDGY ++ TALY++F+G FF+ Sbjct: 9 IRLFIRDHIPLICFTVIQLLSIFLVYWFDGYNHIATALYAMFLGAFFMVGYLIFRYFTHR 68 Query: 61 XXXXXXXXPLETLDESFQKIENNPVSKALEQLLHTQYRHYQQQLTAVKLQQEQHLTFIDQ 120 P+++LDES QK + +S AL+ LL QYRHYQ QL + + HLTF++Q Sbjct: 69 TFYERLANPMQSLDESVQKSDFAAISAALQDLLEVQYRHYQNQLHIQERKNNDHLTFMNQ 128 Query: 121 WVHQMKTPLSVIELTVQNMDEPEFASIREELERMRGGLHTVLYMARLRAFEKDFHIKPVV 180 W+HQMKTPLSVIEL Q+ +P F SI EE +R++ GL LY+ARL AF +DF+++ V Sbjct: 129 WIHQMKTPLSVIELITQDEVDPRFESINEETDRLKKGLEMALYVARLEAFTQDFYVEKVQ 188 Query: 181 LPKLIGEVVHDHKRLFIRNRIFPEVKAASPGITAQTDEKWLFFMLSQIINNAIKYSAAKN 240 L K++ + VH+HKR FIRN ++PE+K IT ++D KWL F++ QI++NAIKYS Sbjct: 189 LYKIVNDSVHEHKRFFIRNFVYPELK-VEKDITVESDAKWLQFLIGQILSNAIKYS---- 243 Query: 241 TGGGQKITVSCYLRGPDAVIEVKDQGIGIQKSDLKRVFDPFFTGDNGRGLRXXXVYGNGA 300 +G +KI V G ++E+ D G+GI K DL RVF PFFTG+NGR + G Sbjct: 244 SGSREKIKVKACKEGNTVILEIADNGVGIPKQDLPRVFKPFFTGENGRDFKESTGMGLYL 303 Query: 301 VFD 303 V++ Sbjct: 304 VYE 306 >B5UZF2.1 B5UZF2_BACCE Sensor protein EC=2.7.13.3 Length = 327 Score = 274 bits (700), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 133/303 (43%), Positives = 195/303 (64%), Gaps = 5/303 (1%) Query: 1 MKLFIREHALLLAVQMVQFGAMLSIYWFDGYRNLPTALYSVFIGFFFLSCXXXXXXXXXX 60 ++LFIR+H L+ ++Q ++ +YWFDG++++ TALY++F+G FF+ Sbjct: 2 IRLFIRDHIPLICFTVIQLLSIFLVYWFDGHKHIATALYAMFLGAFFMVGYLVLRYFTHR 61 Query: 61 XXXXXXXXPLETLDESFQKIENNPVSKALEQLLHTQYRHYQQQLTAVKLQQEQHLTFIDQ 120 P+++LDES QK + +S AL+ LL QYRHYQ QL + + HLTF++Q Sbjct: 62 TFYERLANPMQSLDESVQKSDFAAISAALQDLLEVQYRHYQNQLHIQERKNNDHLTFMNQ 121 Query: 121 WVHQMKTPLSVIELTVQNMDEPEFASIREELERMRGGLHTVLYMARLRAFEKDFHIKPVV 180 W+HQMKTPLSVIEL Q+ +P F SI EE +R++ GL LY+ARL AF +DF+++ V Sbjct: 122 WIHQMKTPLSVIELITQDEVDPRFESINEETDRLKKGLEMALYVARLEAFTQDFYVERVQ 181 Query: 181 LPKLIGEVVHDHKRLFIRNRIFPEVKAASPGITAQTDEKWLFFMLSQIINNAIKYSAAKN 240 L K++ + VH+HKR FIRN ++PE+K IT ++D KWL F++ QI++NAIKYS Sbjct: 182 LHKIVNDSVHEHKRFFIRNFVYPELK-IDKDITVESDAKWLQFLIGQILSNAIKYS---- 236 Query: 241 TGGGQKITVSCYLRGPDAVIEVKDQGIGIQKSDLKRVFDPFFTGDNGRGLRXXXVYGNGA 300 +G +KI V G + ++E+ D G+GI K DL RVF PFFTG+NGR + G Sbjct: 237 SGSREKIKVKACKEGNNVILEIADNGVGIPKQDLPRVFKPFFTGENGRDFKESTGMGLYL 296 Query: 301 VFD 303 V++ Sbjct: 297 VYE 299 >C3H1F7.1 C3H1F7_BACTU Putative uncharacterized protein Length = 324 Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 133/301 (44%), Positives = 193/301 (64%), Gaps = 5/301 (1%) Query: 3 LFIREHALLLAVQMVQFGAMLSIYWFDGYRNLPTALYSVFIGFFFLSCXXXXXXXXXXXX 62 +FIR+H L+ ++Q A+ +YWFDG+ ++ TALY++F+G FF+ Sbjct: 1 MFIRDHIPLICFTIIQLLAIFLVYWFDGHNHITTALYAMFLGVFFMGSYLVFRYFTHRSF 60 Query: 63 XXXXXXPLETLDESFQKIENNPVSKALEQLLHTQYRHYQQQLTAVKLQQEQHLTFIDQWV 122 P+++LDES QK + VS AL++L+ QYRHYQ QL + + HLTF++QW+ Sbjct: 61 YERLANPMQSLDESVQKSDFAAVSAALQELVEVQYRHYQNQLQMQERKNNDHLTFMNQWI 120 Query: 123 HQMKTPLSVIELTVQNMDEPEFASIREELERMRGGLHTVLYMARLRAFEKDFHIKPVVLP 182 HQMKTPLSVIEL Q+ + F SI EE +R++ GL LY+ARL AF +DF+++ V L Sbjct: 121 HQMKTPLSVIELITQDEVDSRFESINEETDRLKKGLEMALYVARLEAFTQDFYVERVQLH 180 Query: 183 KLIGEVVHDHKRLFIRNRIFPEVKAASPGITAQTDEKWLFFMLSQIINNAIKYSAAKNTG 242 K++ + VH+HKR FIRN ++PE++ GIT ++D KWL F++ QI++NAIKYS +G Sbjct: 181 KIVNDSVHEHKRFFIRNFVYPELE-IDKGITVESDVKWLQFLIGQILSNAIKYS----SG 235 Query: 243 GGQKITVSCYLRGPDAVIEVKDQGIGIQKSDLKRVFDPFFTGDNGRGLRXXXVYGNGAVF 302 +KI V G ++E+ D G+GI K DL RVF PFFTG+NGRG + G V+ Sbjct: 236 SREKIKVKACKEGNTVILEIADNGVGIPKQDLPRVFKPFFTGENGRGFKESTGMGLYLVY 295 Query: 303 D 303 + Sbjct: 296 E 296 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.140 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,744,237,853 Number of extensions: 68256509 Number of successful extensions: 258242 Number of sequences better than 1.0e-05: 2373 Number of HSP's gapped: 259895 Number of HSP's successfully gapped: 2373 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)