BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0020.p (1232 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0UZX0.1 C0UZX0_9BACT Putative uncharacterized protein 99 3e-18 B2JT50.1 B2JT50_BURP8 Putative uncharacterized protein 81 9e-13 A6PMJ0.1 A6PMJ0_9BACT Glycoside hydrolase family 2, sugar binding 79 2e-12 A4VKD1.1 A4VKD1_PSEU5 Putative uncharacterized protein 79 3e-12 A6PV67.1 A6PV67_9BACT Glycosyl hydrolase 53 79 4e-12 >C0UZX0.1 C0UZX0_9BACT Putative uncharacterized protein Length = 583 Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 96/350 (27%), Positives = 151/350 (43%), Gaps = 32/350 (9%) Query: 539 TVRR-ADGDQAVVASGTKTYQMEKYAKNTDTVLFDPRLNTIGTYEVAADFRIDGV----- 592 TVR AD + VV Y+ + DT L P T+ + +A R+ GV Sbjct: 212 TVRSLADEPREVVLRQHVEYKDGTVVLDRDTSLTIPPRGTVDVH-LAFTPRLKGVYYGRF 270 Query: 593 ---AQPAKSKKMRLTVINAAAPVSQPDLDNESKFGLNTHYALNWNDDIIDGARKM---GA 646 Q + ++ T P+ D S FG TH+ + D R M G Sbjct: 271 ALLDQQGEELRVLETSFGVIEPLDAHDYSRLSPFGAQTHFG-QYKGDPEKNLRLMSMAGI 329 Query: 647 RHHRSGITWDSVDKNVKDASGNTVYD-------YSGTDPLLTKLFSYGFNQVTVLGIDKN 699 R + W ++K + +D G DPL+ + Y N++ D N Sbjct: 330 NWTRDEMYWSELEKTKGVFTFPPQFDAYVAENVRQGLDPLI--ILDY-HNRL----YDLN 382 Query: 700 AFYQQGTINTTSGLKAMGDFVANTVSRYKDQIRQWEMPNEP---EIFSKPYVPSEFVQLQ 756 +T +GL+ +VA V+RY+DQ+R WE+ NEP + + E+ + Sbjct: 383 ESGSPRAPHTEAGLRGWARYVAEMVTRYRDQVRYWEVWNEPNGQQFWGDEPSAREYAAVL 442 Query: 757 KVAYLNMKQADQNAMLLAGDHTSSVLSVLPKELELGSFDYADAYSYHPYVYNAMPDDNLQ 816 K AY +K+ D +A+++ G + L+ L + + G +Y D S HPY + +L Sbjct: 443 KTAYTTIKRLDPDAVVIGGAIAGTDLNYLRELFDAGGLNYMDVLSIHPYRVGGPDETDLL 502 Query: 817 NIINGVKDLVNAYGGWKDYYLTEGGWPTATAGYPSVSEETQRDYIVRAFL 866 + ++L++ YG K +LTE GW T T Y VSE Q Y+VR +L Sbjct: 503 RDLRFHQELMHEYGYEKPIWLTEIGWATDTGPY-GVSEAQQAQYLVRTYL 551 >B2JT50.1 B2JT50_BURP8 Putative uncharacterized protein Length = 554 Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 117/508 (23%), Positives = 189/508 (37%), Gaps = 81/508 (15%) Query: 544 DGDQAVVASGTKTYQ----MEKYAKNTDTVLFDPRLNTIGTYEVAADFRIDGVAQPAKSK 599 D D AV++ +Y+ + + NT + PR A F +D A K Sbjct: 81 DADGAVMSDPIASYRQAITLTREGVNTTVSIALPR---------AGLFLVDATLLSADGK 131 Query: 600 KMRLTVINAAAPVSQ-----PDLDNESKFGLNTHYALNWN--DDIIDGARKMGARHHRSG 652 + IN AA S+ PD FG+ TH+A + ++ + G R Sbjct: 132 TVATKRINVAAIPSRGRSPFPD------FGVVTHFAQGKGSPEVVLPLVKTAGFSWIRDE 185 Query: 653 ITWDSVDKNVKDASGNTVYDYSGTDPLLTKLFSYGFNQVTVLGIDKNAFY------QQGT 706 + WD +++ G V+ D L G + + VL Y Q Sbjct: 186 LYWDHIEQK----PGLFVFPRDYED-YLNHASKLGISPLIVLAYGNAKAYPALFGGDQSF 240 Query: 707 INTTSGLKAMGDFVANTVSRYKDQIRQWEMPNEPEIFSKPYVPSEFVQLQKVAYLNMKQA 766 T + +V V Y ++ WE+ NEP Y ++V L K Y+ +K+ Sbjct: 241 PRTPEARRFFVRYVDEVVRHYGATVKHWEVWNEPAFAQIGY--PDYVALLKTVYVQIKER 298 Query: 767 DQNAMLLAGDHTSSVLS----VLPKELELGSFDYADAYSYHPYVYNAMPDDNLQNIINGV 822 A +++ + L + + G+ DY DA+S HPY+ P+ + Sbjct: 299 SPQATVVSCGGGGAGGGPGGDCLVEMKKSGALDYQDAFSVHPYMSPHTPEKGYPTAGAAI 358 Query: 823 KDLVNAYGGWK-----------------DYYLTEGGWPTA--TAGYPSVSEETQRDYIVR 863 V+ W ++TE GWP++ +AG + + +Q Y+VR Sbjct: 359 GS-VSIPTAWPYLGQLAEQNPRTDGKRIQLWVTELGWPSSPESAG---LDQTSQAAYLVR 414 Query: 864 AFLNYMVTDQIKAYEYYNYKNDGTDDRYYDIFWGLTDNDGRPKLAYTAVNQLMTTLDKSR 923 ++L K +Y++ +DG D + +GL D PK AY A L TL + Sbjct: 415 SYLLSRRYSTAKVMFWYDFVDDGIDPSNKEDNFGLLRKDLSPKPAYVASAVLAATLGNRK 474 Query: 924 YIGTWDTGNPDIAIHVF-LNDGVPVITAWKKVDHKDDPAVKLPVSTITLPFRSEGVSIKD 982 W T D + VF + PVI W +V++P +D Sbjct: 475 ----WHTALVDDDVKVFQYGNSEPVIVGWTTERAARVVSVQVPAGKYVQ---------RD 521 Query: 983 INGTAVPVTPAGGGDLQLAVSGSPVYIT 1010 G PVT A G L+ + P Y+ Sbjct: 522 WQGAESPVTAAASG-LKWRLGPLPSYLV 548 >A6PMJ0.1 A6PMJ0_9BACT Glycoside hydrolase family 2, sugar binding Length = 821 Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 105/422 (24%), Positives = 171/422 (40%), Gaps = 64/422 (15%) Query: 620 ESKFGLNTHYALNWNDDIIDG---ARKMGARHHRSGITWDSVDKNVKDASGNTVYDYSGT 676 E +FGL H +D+++ AR++G R+G W K+ + G +++S Sbjct: 426 EPRFGLAGHLNRLDDDELVRTLAVARRIGIGTFRTGFLW----KDAEPEPGR--WNWSRF 479 Query: 677 DPLLTKLFSYGFNQVTVLG-----IDKNAFYQQGTINTTSGLKAMG---DFVANTVSRYK 728 D + L G L + ++G + + ++ RY Sbjct: 480 DRTVKALRDSGMELTATLAGTPDWASTDPLGRRGLPRKAGRMPQLDRWQEYARRIAQRYA 539 Query: 729 DQIRQWEMPNEPEIFS--KPYVPS-EFVQLQKVAYLNMKQADQNAMLLAGDHTSSVLSVL 785 WE+ NEP + S KP S ++ QLQ+ Y +K D NA +L S V Sbjct: 540 GNGISWELWNEPNLKSYWKPAPESHQYFQLQQAGYRGVKAGDPNATVLTAGF-SPFRFVE 598 Query: 786 P---KELELGS-FDYA------DAYSYHPY------VYNAMPDDNLQNIINGVKDLVNAY 829 P EL L ++YA D +YHPY + NA + ++ ++ + + Sbjct: 599 PDATAELFLDDLYEYAGQEKVFDRIAYHPYPVMRKAITNASLEQQFTEMMRRLRAVRDRR 658 Query: 830 GGWKDYYLTEGGWPTATAGYPSVSEETQRDYIVRAFLNYMVTDQ-IKAYEYYNYKNDGTD 888 G + LTE G P P +E ++ I+ L D I+ +YN++NDG + Sbjct: 659 GDRSGFRLTELGAPN----LPRTVDERRQAEILTLLLTLCAADPGIERVHWYNFQNDGDN 714 Query: 889 DRYYDIFWGLTDNDGRPKLAYTAVNQLMTTLDKSRYIGTWDTGNPDIAIHVFLNDGVPVI 948 Y + +GL +D PK A A L+ L ++ Y + I H F G P++ Sbjct: 715 PDYAEHNFGLVHHDLSPKPALFAFRHLLRMLSRADYQERIEENG--IVFHRFTAGGAPLL 772 Query: 949 TAWKKVDHKDDPAVKLPVSTITLPFRSEGVSIKDING-TAVPVTPAGGGDLQLAVSGSPV 1007 AW D P + TLP + + G T P+ PA G +L + +PV Sbjct: 773 VAW-----SDTP------TNWTLP-----PGVAAVTGVTGEPLHPADG---RLTIGTAPV 813 Query: 1008 YI 1009 Y+ Sbjct: 814 YL 815 >A4VKD1.1 A4VKD1_PSEU5 Putative uncharacterized protein Length = 438 Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 12/282 (4%) Query: 680 LTKLFSYGFNQVTVLGIDKNAFYQQGTINTTSGLKAMGDFVANTVSR-YKDQIRQWEMPN 738 L + +G + +LG N + G T ++A + N +S +K Q+ +E+ N Sbjct: 91 LKETARHGLSTQFILGYG-NQHHGGGEKPRTEPVRAAFNRYVNHLSEAFKGQVAYYEIWN 149 Query: 739 EPEIF--SKPYVPSEFVQLQKVAYLNMKQADQNAMLLAGDHTSSVLS--VLPKELELGSF 794 E ++ P ++ +L A ++Q D A +LAG T+ + + LE G Sbjct: 150 EWDVEDPRDPRFTQDYARLIADAAGIVRQRDPAAKVLAGAVTTQGIESGFALRLLENGLM 209 Query: 795 DYADAYSYHPYVY-----NAMPDDNLQNIINGVKDLVNAYGGWKDYYLTEGGWPTATAGY 849 D S HPYV+ P+ + + K+L A G YLTE WP+ G Sbjct: 210 QSVDGLSLHPYVHCRGWRRNTPEAWIDWMAEVDKELTRAAGRPVPLYLTEMAWPSHQ-GA 268 Query: 850 PSVSEETQRDYIVRAFLNYMVTDQIKAYEYYNYKNDGTDDRYYDIFWGLTDNDGRPKLAY 909 + E Q Y+ RAF I+ +Y+++NDGTD + +GL D PK AY Sbjct: 269 CGIDENLQAAYLARAFFLARTLPSIRGMWWYDFRNDGTDRTEREHNFGLVRQDFTPKPAY 328 Query: 910 TAVNQLMTTLDKSRYIGTWDTGNPDIAIHVFLNDGVPVITAW 951 + + + R+IG + + D+ F ++ AW Sbjct: 329 RVLTAVSDIVANYRFIGREENSDGDVVALRFARGEDELLVAW 370 >A6PV67.1 A6PV67_9BACT Glycosyl hydrolase 53 Length = 664 Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 9/233 (3%) Query: 752 FVQLQKVAYLNMKQADQNAMLLAGDHTSSVLSVLPKELELGSFDYADAYSYHPYVYN--- 808 ++ L K AY +KQAD +A +++G + K L+LG D+ D S H Y + Sbjct: 167 YINLLKAAYPALKQADPDATVVSGSVCTGD-EYFEKLLQLGIADHCDILSIHTYNFQQRG 225 Query: 809 -AMPDDNLQNIINGVKDLVNAY--GGWKDYYLTEGGWPTATAGYPSVSEETQRDYIVRAF 865 A + Q + + +++ Y G K ++TE G+P+ T + + E Y+ R Sbjct: 226 EAATPEAWQRRMLKLDEMIRKYNNGDSKPVFVTEMGYPSFTGPHGRTAGECAV-YLARLM 284 Query: 866 LNYMVTDQIKAYEYYNYKNDGTDDRYYDIFWGLTDNDGRPKLAYTAVNQLMTTLDKSRYI 925 L ++ +Y+ ++DG D + +GL + DG PK A + L + K ++ Sbjct: 285 LLARTVPNLRGLWWYDLQDDGWDITEREHNFGLFNADGTPKPAAAVMRDLAPLVRKGEFL 344 Query: 926 GTWDTGNPDIAIHVFLNDGVPVITAWKKVDHKDDPA-VKLPVSTITLPFRSEG 977 G DTG+P + I F +DG W + K P ST T R G Sbjct: 345 GRLDTGDPSVWILRFRHDGRETQAMWSTGGRRSGLVWEKGPGSTGTFKMRRPG 397 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 7,523,145,230 Number of extensions: 336792369 Number of successful extensions: 803608 Number of sequences better than 1.0e-05: 61 Number of HSP's gapped: 803626 Number of HSP's successfully gapped: 61 Length of query: 1232 Length of database: 3,060,696,203 Length adjustment: 148 Effective length of query: 1084 Effective length of database: 1,666,385,983 Effective search space: 1806362405572 Effective search space used: 1806362405572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 137 (57.4 bits)