BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0018.p (384 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B6A1Q4.1 B6A1Q4_RHILW Glycosyl hydrolase family 88 202 3e-50 B0J8H4.1 B0J8H4_RHILT Glycosyl hydrolase family 88 199 3e-49 Q1M3C9.1 Q1M3C9_RHIL3 Putative uncharacterized protein 199 3e-49 B3Q5T9.1 B3Q5T9_RHIE6 Putative glycosyl hydrolase family protein 197 1e-48 Q2JZ01.1 Q2JZ01_RHIEC Hypothetical conserved protein 196 5e-48 >B6A1Q4.1 B6A1Q4_RHILW Glycosyl hydrolase family 88 Length = 364 Score = 202 bits (515), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 118/320 (36%), Positives = 169/320 (52%), Gaps = 6/320 (1%) Query: 58 GMNIENWDWVPGVGVIALLEYYESSGDPEVLVFLTEWVARNKHKAEETRVINSIAPYAVF 117 G+ + WDW GVG+ L S+ D + L L W A + R INS AP Sbjct: 40 GIQFDEWDWEVGVGLYGFLRRAISTNDQKALQELVAWYAGQIERGLPPRQINSTAPMLPL 99 Query: 118 PALYRLTGDEWLKEEAVRIADWLLKEAPKTREQALEHTVTEKADFSEQVWADTIFMAVLF 177 L + + A+WL+KE PKT E +H V E+ + E +W DT+FMA LF Sbjct: 100 AILVQHVDRPDFRALVEDWAEWLVKELPKTEEGGFQHVVKERLNDGE-LWDDTLFMACLF 158 Query: 178 LARTAKLVENKSYAEEALKQVLIHLRLLNDKEHHVLFHGWNCNSGDHMSGARWTRANAWI 237 LAR L E + +EA+ Q +IH R L+D + +HGW N + + A W R NAWI Sbjct: 159 LARAGVLCERSDWVDEAVYQFVIHTRYLSDPVSGLWYHGWTFNGRHNFANAFWARGNAWI 218 Query: 238 AAGVPLIVKEIAPLIAIPDE--LGQRYGCLLAGLVSFQQKDGLWSTVMDQPGFYREISGS 295 +P + ++ P + D L + L ++Q+ DG+++T++D P E S + Sbjct: 219 TVAIPELF-DLVPTLGEKDRRFLSNVLVSQVRSLKAYQRPDGMFTTLLDDPSSPLETSAT 277 Query: 296 AGIAYGLQIAMEQGLVDASPVYESAAERALQAILPYISEAGVVDGVSGGTPVMDSVEAYN 355 AGIAYG+ A++ G++D S AERAL A+L I E GVV GVS GTP+ ++ Y Sbjct: 278 AGIAYGMLRAIDAGILDESD--RPHAERALAAVLTQIDEEGVVHGVSDGTPMGHDLDFYR 335 Query: 356 RIPVYPALYGQGLVLMLLAK 375 RIP P YGQ L ++LL + Sbjct: 336 RIPNLPTPYGQALTMLLLTE 355 >B0J8H4.1 B0J8H4_RHILT Glycosyl hydrolase family 88 Length = 364 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/320 (36%), Positives = 169/320 (52%), Gaps = 6/320 (1%) Query: 58 GMNIENWDWVPGVGVIALLEYYESSGDPEVLVFLTEWVARNKHKAEETRVINSIAPYAVF 117 G+ + WDW GVG+ L S+ D + L L W A + R INS AP Sbjct: 40 GIQFDEWDWEVGVGLYGFLRRAISTNDQKALQELVAWYAGQIERGLPPRQINSTAPMLPL 99 Query: 118 PALYRLTGDEWLKEEAVRIADWLLKEAPKTREQALEHTVTEKADFSEQVWADTIFMAVLF 177 L + + A+WL+KE PKT + +H V E+ + E +W DT+FMA LF Sbjct: 100 AILVQHVDRPDFRALVEDWAEWLVKELPKTEDGGFQHVVKERLNDGE-LWDDTLFMACLF 158 Query: 178 LARTAKLVENKSYAEEALKQVLIHLRLLNDKEHHVLFHGWNCNSGDHMSGARWTRANAWI 237 LAR L E + +EA+ Q +IH R L+D + +HGW N + + A W R NAWI Sbjct: 159 LARAGVLCERSEWIDEAVYQFVIHTRYLSDPVSGLWYHGWTFNGRHNFANAFWARGNAWI 218 Query: 238 AAGVPLIVKEIAPLIAIPDE--LGQRYGCLLAGLVSFQQKDGLWSTVMDQPGFYREISGS 295 +P + ++ P + D L + L ++Q+ DG+++T++D P E S + Sbjct: 219 TVAIPELF-DLVPTLGEKDRRFLSNVLVSQVRSLKAYQRPDGMFTTLLDDPSSPLETSAT 277 Query: 296 AGIAYGLQIAMEQGLVDASPVYESAAERALQAILPYISEAGVVDGVSGGTPVMDSVEAYN 355 AGIAYG+ A++ G++D + AERAL A+L I E GVV GVS GTP+ ++ Y Sbjct: 278 AGIAYGILRAIDAGILDKDD--RAYAERALAAVLAQIDEEGVVHGVSDGTPMGHDLDFYR 335 Query: 356 RIPVYPALYGQGLVLMLLAK 375 RIP P YGQ L ++LL + Sbjct: 336 RIPNVPTPYGQALTMLLLTE 355 >Q1M3C9.1 Q1M3C9_RHIL3 Putative uncharacterized protein Length = 364 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 116/320 (36%), Positives = 169/320 (52%), Gaps = 6/320 (1%) Query: 58 GMNIENWDWVPGVGVIALLEYYESSGDPEVLVFLTEWVARNKHKAEETRVINSIAPYAVF 117 G+ + WDW GVG+ L S+ D + L L W A + R INS AP Sbjct: 40 GIQFDEWDWEVGVGLYGFLRRAISTNDQKALQELVAWYAGQIERGLPPRQINSTAPMLPL 99 Query: 118 PALYRLTGDEWLKEEAVRIADWLLKEAPKTREQALEHTVTEKADFSEQVWADTIFMAVLF 177 L + + A+WL+KE PKT + +H V E+ + E +W DT+FMA LF Sbjct: 100 AILVQHVDRPDFRALVEDWAEWLVKELPKTEDGGFQHVVKERLNEGE-LWDDTLFMACLF 158 Query: 178 LARTAKLVENKSYAEEALKQVLIHLRLLNDKEHHVLFHGWNCNSGDHMSGARWTRANAWI 237 LAR L E + +EA+ Q +IH R L+D + +HGW N + + A W R NAWI Sbjct: 159 LARAGVLCERSEWIDEAVYQFVIHTRYLSDPVSGLWYHGWTFNGRHNFANAFWARGNAWI 218 Query: 238 AAGVPLIVKEIAPLIAIPDE--LGQRYGCLLAGLVSFQQKDGLWSTVMDQPGFYREISGS 295 +P + ++ P + D L + L ++Q+ DG+++T++D P E S + Sbjct: 219 TVAIPELF-DLVPTLGEKDRRFLSNVLVSQVRSLKAYQRPDGMFTTLLDDPSSPLETSAT 277 Query: 296 AGIAYGLQIAMEQGLVDASPVYESAAERALQAILPYISEAGVVDGVSGGTPVMDSVEAYN 355 AGIAYG+ A++ G++D + AERAL A+L I E GVV GVS GTP+ ++ Y Sbjct: 278 AGIAYGILRAIDAGILDKDD--RAYAERALAAVLAQIDEEGVVHGVSDGTPMGHDLDFYR 335 Query: 356 RIPVYPALYGQGLVLMLLAK 375 RIP P YGQ L ++LL + Sbjct: 336 RIPNVPTPYGQALTMLLLTE 355 >B3Q5T9.1 B3Q5T9_RHIE6 Putative glycosyl hydrolase family protein Length = 364 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/331 (35%), Positives = 173/331 (52%), Gaps = 6/331 (1%) Query: 47 KEMTGKHDNNWGMNIENWDWVPGVGVIALLEYYESSGDPEVLVFLTEWVARNKHKAEETR 106 KE D G+ + WDW GVG+ L ++ DP+ L L W + + R Sbjct: 29 KEGLVTDDAASGIQFDEWDWEVGVGLYGFLRRAIAANDPKALQELVVWYSGQIDRGLPPR 88 Query: 107 VINSIAPYAVFPALYRLTGDEWLKEEAVRIADWLLKEAPKTREQALEHTVTEKADFSEQV 166 INS AP L + A+WL+KE PKT + +H V E+ + E + Sbjct: 89 QINSTAPMLPLAILVEHVDRPDFRALVEDWAEWLVKELPKTEDGGFQHVVKERLNDGE-L 147 Query: 167 WADTIFMAVLFLARTAKLVENKSYAEEALKQVLIHLRLLNDKEHHVLFHGWNCNSGDHMS 226 W DT+FMA LFLAR L + + +EA+ Q +IH R L+D + +HGW N + + Sbjct: 148 WDDTLFMACLFLARAGVLCKRNDWIDEAVYQFVIHTRYLSDPVSGLWYHGWTFNGRHNFA 207 Query: 227 GARWTRANAWIAAGVPLIVKEIAPLIAIPDE--LGQRYGCLLAGLVSFQQKDGLWSTVMD 284 A W R NAWI +P + ++ P + D L + L ++Q+ DG+++T++D Sbjct: 208 NAFWARGNAWITVAIPELF-DLVPTLGEKDRRFLSNVLVSQVRSLKAYQRPDGMFTTLLD 266 Query: 285 QPGFYREISGSAGIAYGLQIAMEQGLVDASPVYESAAERALQAILPYISEAGVVDGVSGG 344 P E S +AGIAYG+ A++ G++ S + AERAL+A+L I E GVV GVS G Sbjct: 267 DPSSPLETSATAGIAYGILRAIDAGILGESD--KVHAERALKAVLAQIDEEGVVHGVSDG 324 Query: 345 TPVMDSVEAYNRIPVYPALYGQGLVLMLLAK 375 TP+ ++ Y RIP P YGQ L ++LL + Sbjct: 325 TPMGHDLDFYRRIPNLPTPYGQALTMLLLTE 355 >Q2JZ01.1 Q2JZ01_RHIEC Hypothetical conserved protein Length = 364 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 172/329 (52%), Gaps = 9/329 (2%) Query: 58 GMNIENWDWVPGVGVIALLEYYESSGDPEVLVFLTEWVARNKHKAEETRVINSIAPYAVF 117 G+ + WDW GVG+ L S+ D + L L W + + R INS AP Sbjct: 40 GIQFDEWDWEVGVGLYGFLRRAISANDQKALQELVAWYSAQIDRGLPPRQINSTAPMLPL 99 Query: 118 PALYRLTGDEWLKEEAVRIADWLLKEAPKTREQALEHTVTEKADFSEQVWADTIFMAVLF 177 L + A+WL+KE PKT + +H V E+ + E +W DT+FMA LF Sbjct: 100 AILVEHVDRPDFRALVEDWAEWLVKELPKTEDGGFQHVVKERLNDGE-LWDDTLFMACLF 158 Query: 178 LARTAKLVENKSYAEEALKQVLIHLRLLNDKEHHVLFHGWNCNSGDHMSGARWTRANAWI 237 LAR L E + +EA+ Q +IH R L+D + +HGW N + + A W R NAWI Sbjct: 159 LARAGVLCERNDWIDEAVYQFVIHTRYLSDPVTGLWYHGWTFNGRHNFANAFWARGNAWI 218 Query: 238 AAGVPLIVKEIAPLIAIPDE--LGQRYGCLLAGLVSFQQKDGLWSTVMDQPGFYREISGS 295 +P + ++ P + D L + L + Q+ DG+++T++D P E S + Sbjct: 219 TVAIPELF-DLVPTLGEKDRRFLSNVLVSQVRSLKAHQRPDGMFTTLLDDPSSPLETSAT 277 Query: 296 AGIAYGLQIAMEQGLVDASPVYESAAERALQAILPYISEAGVVDGVSGGTPVMDSVEAYN 355 AGIAYG+ A++ G++ S + AERAL+A+L I E GVV GVS GTP+ ++ Y Sbjct: 278 AGIAYGILRAIDAGILGESD--KVHAERALKAVLAQIDEEGVVHGVSDGTPMGHDLDFYR 335 Query: 356 RIPVYPALYGQGLVLMLLAKA---PGRKE 381 RIP P YGQ L ++LL + GR++ Sbjct: 336 RIPNLPTPYGQALTMLLLTEVFIESGRRQ 364 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,386,947,829 Number of extensions: 96728047 Number of successful extensions: 253364 Number of sequences better than 1.0e-05: 248 Number of HSP's gapped: 252955 Number of HSP's successfully gapped: 248 Length of query: 384 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 247 Effective length of database: 1,770,017,148 Effective search space: 437194235556 Effective search space used: 437194235556 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)