BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0017.p (294 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K6J1.1 B3K6J1_9BACI Binding-protein-dependent transport system... 301 3e-80 B3KF74.1 B3KF74_9BACI Binding-protein-dependent transport system... 274 8e-72 B3KI35.1 B3KI35_9BACI Binding-protein-dependent transport system... 271 5e-71 B3KF67.1 B3KF67_9BACI Binding-protein-dependent transport system... 266 1e-69 C0UXG0.1 C0UXG0_9BACT Carbohydrate ABC transporter membrane prot... 266 2e-69 >B3K6J1.1 B3K6J1_9BACI Binding-protein-dependent transport systems inner membrane component Length = 322 Score = 301 bits (772), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 139/292 (47%), Positives = 211/292 (72%) Query: 3 KYKLLYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVGFKYFRMLFESEMF 62 +Y LY++++P + VF YLP+ GI IAF DY++ GF+AS+WVG +F LF F Sbjct: 31 QYWDLYLIMVPGIVYFLVFKYLPMWGIVIAFKDYSIFAGFNASEWVGLDHFVRLFHDTQF 90 Query: 63 RNAFLNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGGII 122 F NT++ISLYK++ GF PI+LAL LNEIR++++K+T+QT YLP F+SW++ GGI+ Sbjct: 91 YQVFWNTVIISLYKLIWGFPGPIILALLLNEIRSMFYKRTIQTLAYLPHFLSWIILGGIL 150 Query: 123 SLLLSPETGVISSIIEFFGGKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIAGLN 182 +LSP TG ++ I+++ G +P + LA+PA+FR++LVI+D KE+GW AIIY+AA+AG++ Sbjct: 151 VNVLSPATGAVNEIMKWLGFEPVFFLADPAWFRSVLVISDIWKEVGWGAIIYLAALAGID 210 Query: 183 PEVYEAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMVFEV 242 + YEAA MDGA ++K++ HVTLP I TIIV+F+LR+G+++ G +Q+ LYN +V++V Sbjct: 211 QQQYEAAVMDGAGKWKQLWHVTLPSIKGTIIVLFLLRLGSILDVGFEQIFVLYNSLVYDV 270 Query: 243 GDILDTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGIF 294 D+++TY+YRIGI Q S + A ++K I VLV++ N + GI+ Sbjct: 271 ADVIETYVYRIGIGQSEFSYSTAVGLLKSAISLVLVVIVNKAVKRTGQEGIY 322 >B3KF74.1 B3KF74_9BACI Binding-protein-dependent transport systems inner membrane component Length = 288 Score = 274 bits (700), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 126/288 (43%), Positives = 200/288 (69%) Query: 7 LYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVGFKYFRMLFESEMFRNAF 66 +Y+LL+P ++ +F Y P+ GI IAF D+N+ G S S+WVG F L +S+ F Sbjct: 1 MYLLLIPGLVFLLLFKYTPMYGIVIAFQDFNIFGGISGSEWVGMAQFERLLQSDEFLQVL 60 Query: 67 LNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGGIISLLL 126 +NTLLISLYK+ F PIV+AL LNE+R ++FK+T+QT +YLP F+SWV+ G+ +L Sbjct: 61 VNTLLISLYKITILFPIPIVIALMLNEVRRMFFKRTIQTIIYLPHFLSWVIISGLFLNIL 120 Query: 127 SPETGVISSIIEFFGGKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIAGLNPEVY 186 SP G+++ II FGG+P + + FR+++V T KE+GW AI++IAAIAG+ E Y Sbjct: 121 SPTGGIVNEIIRSFGGEPISFFTDNSLFRSLVVFTAGWKEIGWNAIVFIAAIAGIEQEQY 180 Query: 187 EAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMVFEVGDIL 246 EAA +DGA R ++M ++LPG+ TI+++FILR+G+++ AG +Q++ +YNP+V+E GD++ Sbjct: 181 EAAAIDGAGRIRQMWSISLPGMLPTIVLMFILRIGSLLEAGTEQILTMYNPLVYETGDVI 240 Query: 247 DTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGIF 294 TY+YR+G+ Q + S + A + +GF+L+++ N ++ K + I+ Sbjct: 241 GTYVYRMGLGQQDYSFSTAVGLFNSAVGFLLIVMGNMLSRKFLNRSIW 288 >B3KI35.1 B3KI35_9BACI Binding-protein-dependent transport systems inner membrane component Length = 308 Score = 271 bits (693), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 136/294 (46%), Positives = 192/294 (65%) Query: 1 VWKYKLLYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVGFKYFRMLFESE 60 +W++KL Y+ +LP W F+F Y+PL GI +AF DY I GF+ S W GFKYF F Sbjct: 15 IWQHKLFYLFMLPGIVWFFLFSYVPLYGIQVAFRDYTFIGGFTGSPWAGFKYFEQFFNYY 74 Query: 61 MFRNAFLNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGG 120 + NT++ISL K+L GF PI+LAL LNE+R + FKKT+QT YLP FVSW+V Sbjct: 75 QSGDIIRNTVIISLMKLLIGFPMPIILALLLNEVRKMKFKKTIQTLSYLPYFVSWIVVVT 134 Query: 121 IISLLLSPETGVISSIIEFFGGKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIAG 180 ++ LL+P G ++ ++ FG + L P +F ++V +D K +GW +II++AAIAG Sbjct: 135 LMQRLLTPYGGPVNDLLGSFGAESIQFLNNPTWFYQMIVGSDIWKNIGWNSIIFMAAIAG 194 Query: 181 LNPEVYEAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMVF 240 ++ ++YEAA MDGA RFK+M HVTLPGI + I++FIL VG +MSAG +Q++ L P Sbjct: 195 IDQQLYEAAKMDGAGRFKQMWHVTLPGIRNVAIILFILAVGNLMSAGYEQLLLLNGPATA 254 Query: 241 EVGDILDTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGIF 294 +G +LD + GI + LS AAA + + +IG +LVL N IA KV+D +F Sbjct: 255 SMGSVLDVHAINSGIREGRLSYAAAVGLFQSIIGLILVLTVNRIARKVSDVSLF 308 >B3KF67.1 B3KF67_9BACI Binding-protein-dependent transport systems inner membrane component Length = 322 Score = 266 bits (681), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 131/291 (45%), Positives = 192/291 (65%), Gaps = 2/291 (0%) Query: 2 WKYKLLYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVG--FKYFRMLFES 59 W++K YI+LLP + +F Y P+ G+ IAF D+ ++ G + S WV +K+F+ +ES Sbjct: 29 WRFKAFYIMLLPGIIYFVIFRYFPMYGVIIAFKDFAILDGITGSSWVDPWYKHFQSFYES 88 Query: 60 EMFRNAFLNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYG 119 F NTLLISLYK+L G L PI+LA+ LNE R W K +QT Y+P F+SWV+ Sbjct: 89 PYFSQLLTNTLLISLYKLLWGTLPPIMLAILLNECRIRWLKSIVQTLTYMPHFLSWVIIF 148 Query: 120 GIISLLLSPETGVISSIIEFFGGKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIA 179 GI+ L S G+I+ I GG L YFR+ILV ++ + +GW AIIY+AA+A Sbjct: 149 GILLTLFSQNGGLINRWIVEAGGSSIPFLTSTEYFRSILVGSEVWQNLGWGAIIYLAAMA 208 Query: 180 GLNPEVYEAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMV 239 G++P +YEAA +DGA+R + + H+TLPGI S I+++F+L++G ++ AG DQ+ LYN V Sbjct: 209 GIDPTLYEAAKVDGASRMRMIWHITLPGIRSIIVLLFVLKLGHLLDAGFDQIYILYNIQV 268 Query: 240 FEVGDILDTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVND 290 + V DI+DT++YR G++Q N SLA+A + K +IG +LVL N +A K + Sbjct: 269 YPVADIIDTWVYRTGLQQLNFSLASAVGLFKSVIGLILVLGANRVAKKWGE 319 >C0UXG0.1 C0UXG0_9BACT Carbohydrate ABC transporter membrane protein 1, CUT1 family Length = 323 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 126/294 (42%), Positives = 199/294 (67%), Gaps = 2/294 (0%) Query: 3 KYKLLYILLLPAFAWVFVFDYLPLKGISIAFMDYNVIQGFSASDWVG--FKYFRMLFESE 60 K +LYI++LP + +F Y P+ G IAF DY++ +G S W +K+F+ +FES Sbjct: 30 KNYMLYIMVLPGILYFLIFRYGPMYGAIIAFKDYHIQEGILGSPWANPWYKHFKTIFEST 89 Query: 61 MFRNAFLNTLLISLYKMLSGFLSPIVLALALNEIRTVWFKKTLQTAVYLPRFVSWVVYGG 120 F N NT+LIS+YK++ G + I++AL LNE R WFK+T+QT YLP F+SWVV G Sbjct: 90 YFFNILTNTILISIYKLVFGLPAAIIMALLLNEARITWFKRTIQTVTYLPHFLSWVVVYG 149 Query: 121 IISLLLSPETGVISSIIEFFGGKPAYLLAEPAYFRTILVITDALKEMGWPAIIYIAAIAG 180 I +LSP G+++ + G P +A P +FRT++V +D K++GW AII++AA+ G Sbjct: 150 IAQAVLSPSGGLVNKALVALGMNPVDFIASPQWFRTVIVASDIWKDIGWGAIIFLAALTG 209 Query: 181 LNPEVYEAATMDGATRFKKMLHVTLPGITSTIIVIFILRVGTVMSAGLDQVINLYNPMVF 240 ++P +YEAA +DGA+R +++ +VT+PGI ++++ +L +G +++AG +Q+ Y+P V+ Sbjct: 210 ISPHLYEAAAVDGASRLQRIWYVTIPGIMPVVVLVALLNIGNLLNAGFEQIFIFYSPSVY 269 Query: 241 EVGDILDTYIYRIGIEQFNLSLAAAADVIKGLIGFVLVLLTNHIAAKVNDSGIF 294 VGDI+DT++YR GI F S+AAA + KG++GF+L+ TN ++ K SGI+ Sbjct: 270 SVGDIIDTWVYRQGIVGFQYSVAAAVGLFKGVVGFILIFGTNWLSKKYTGSGIW 323 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,661,734,744 Number of extensions: 67099245 Number of successful extensions: 247734 Number of sequences better than 1.0e-05: 4403 Number of HSP's gapped: 245399 Number of HSP's successfully gapped: 4404 Length of query: 294 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 160 Effective length of database: 1,798,280,193 Effective search space: 287724830880 Effective search space used: 287724830880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)