BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0016.p (304 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4ANQ2.1 B4ANQ2_BACPU Protein LplC 232 3e-59 Q62RE2.1 Q62RE2_BACLD Putative multiple sugar transport system p... 231 5e-59 Q65FY4.1 Q65FY4_BACLD YtcP 231 8e-59 A8FGF7.1 A8FGF7_BACP2 ABC superfamily ATP binding cassette trans... 231 9e-59 P39129.1 LPLC_BACSU Protein lplC 228 6e-58 >B4ANQ2.1 B4ANQ2_BACPU Protein LplC Length = 292 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 122/293 (41%), Positives = 188/293 (64%), Gaps = 5/293 (1%) Query: 14 MKTSKRETGFAVSNYXXXXXXXXXXVLPFWYVLSVS-VTPYQIYSEKNGLVLFPTSFSLQ 72 + S ++ F + NY VLPF +V++ S T ++ ++K +LFPT+FSL+ Sbjct: 3 IDRSIKDRLFNLFNYSFLLMFALICVLPFIHVIAASFATVEEVITKK--FILFPTTFSLE 60 Query: 73 YFDYLLKEGSMIYNAYGNTIRNTVCGXXXXXXXXXXXXYSLAEKKLPGRRVIMLYFVFTM 132 + Y+ ++Y + +I T+ G Y L+ ++L GRR +M VFTM Sbjct: 61 AYRYIFST-DIVYRSLIVSILVTLVGTAVSMFLSSLMAYGLSRQELKGRRTLMFLVVFTM 119 Query: 133 LFKGGMIPTYITIKQLGLLNTNYVLILVMAYSAFNMILMKSFFEGIPESLKESASIDGAS 192 LF GGMIPT+I +K LGLL+T + LIL +A +AFN+I++K+FF+ IP SL+ESA +DG + Sbjct: 120 LFSGGMIPTFIVVKTLGLLDTYWSLILPVAINAFNLIILKNFFQNIPASLEESAKMDGCN 179 Query: 193 EFRILWRIVLPLSMPVIATVSLLYLVVYWNDFFNALLYTSEWSKAPVQLVLRTI-IASSS 251 + I ++IVLPLS+P IAT+SL Y V YWN + A+LY ++ K P+Q++LR I I SS Sbjct: 180 DLGIFFKIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSVKWPIQVLLRQIVIVSSG 239 Query: 252 LPPELLETAGSAPPPTIGIQMAAIVIVALPMMIIYPFVQRFFEQGMLIGSVKG 304 + ++ + S PPP I+MA IV+ +P++++YPF+Q+ F +G L+GSVKG Sbjct: 240 MQGDMSDMGSSTPPPDQTIKMAVIVVATIPVLLVYPFIQKHFNKGALLGSVKG 292 >Q62RE2.1 Q62RE2_BACLD Putative multiple sugar transport system permease protein YtcP Length = 278 Score = 231 bits (590), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 122/280 (43%), Positives = 180/280 (64%), Gaps = 5/280 (1%) Query: 27 NYXXXXXXXXXXVLPFWYVLSVS-VTPYQIYSEKNGLVLFPTSFSLQYFDYLLKEGSMIY 85 NY VLPF +V++ S T ++ S+K +L PT+FSL + Y+ ++Y Sbjct: 2 NYSFLTGFGLVCVLPFIHVIAASFATVEEVISKK--FILIPTTFSLDAYRYIFST-DIVY 58 Query: 86 NAYGNTIRNTVCGXXXXXXXXXXXXYSLAEKKLPGRRVIMLYFVFTMLFKGGMIPTYITI 145 + +I T G Y L+ K+L GRRV+M VFTMLF GGMIPT++ + Sbjct: 59 RSLIVSILVTAVGTAVSMFLSSLMAYGLSRKELMGRRVLMFLVVFTMLFSGGMIPTFLVV 118 Query: 146 KQLGLLNTNYVLILVMAYSAFNMILMKSFFEGIPESLKESASIDGASEFRILWRIVLPLS 205 K LGLL+T + LIL A +AFN+I++K+FF+ IP SL+ESA IDG ++ I +RI+LPLS Sbjct: 119 KSLGLLDTYWSLILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDIGIFFRIILPLS 178 Query: 206 MPVIATVSLLYLVVYWNDFFNALLYTSEWSKAPVQLVLRTI-IASSSLPPELLETAGSAP 264 +P IAT+SL Y V YWN + A+LY S+ +K P+Q++LR I I SS + ++ E +A Sbjct: 179 LPAIATISLFYAVTYWNTYMQAILYLSDATKWPIQVLLRQIVIVSSGMQGDMTEMGAAAA 238 Query: 265 PPTIGIQMAAIVIVALPMMIIYPFVQRFFEQGMLIGSVKG 304 PP I+MA IV+ +P++++YPF+Q+ F +G L+GS+KG Sbjct: 239 PPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSIKG 278 >Q65FY4.1 Q65FY4_BACLD YtcP Length = 268 Score = 231 bits (588), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 120/268 (44%), Positives = 178/268 (66%), Gaps = 5/268 (1%) Query: 39 VLPFWYVLSVS-VTPYQIYSEKNGLVLFPTSFSLQYFDYLLKEGSMIYNAYGNTIRNTVC 97 VLPF +V++ S T ++ S+K +L PT+FSL + Y+ ++Y + +I T Sbjct: 4 VLPFIHVIAASFATVEEVISKK--FILIPTTFSLDAYRYIFST-DIVYRSLIVSILVTAV 60 Query: 98 GXXXXXXXXXXXXYSLAEKKLPGRRVIMLYFVFTMLFKGGMIPTYITIKQLGLLNTNYVL 157 G Y L+ K+L GRRV+M VFTMLF GGMIPT++ +K LGLL+T + L Sbjct: 61 GTAVSMFLSSLMAYGLSRKELMGRRVLMFLVVFTMLFSGGMIPTFLVVKSLGLLDTYWSL 120 Query: 158 ILVMAYSAFNMILMKSFFEGIPESLKESASIDGASEFRILWRIVLPLSMPVIATVSLLYL 217 IL A +AFN+I++K+FF+ IP SL+ESA IDG ++ I +RI+LPLS+P IAT+SL Y Sbjct: 121 ILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDIGIFFRIILPLSLPAIATISLFYA 180 Query: 218 VVYWNDFFNALLYTSEWSKAPVQLVLRTI-IASSSLPPELLETAGSAPPPTIGIQMAAIV 276 V YWN + A+LY S+ +K P+Q++LR I I SS + ++ E +A PP I+MA IV Sbjct: 181 VTYWNTYMQAILYLSDATKWPIQVLLRQIVIVSSGMQGDMTEMGAAAAPPEQTIKMAVIV 240 Query: 277 IVALPMMIIYPFVQRFFEQGMLIGSVKG 304 + +P++++YPF+Q+ F +G L+GS+KG Sbjct: 241 VATIPVLLVYPFIQKHFAKGALLGSIKG 268 >A8FGF7.1 A8FGF7_BACP2 ABC superfamily ATP binding cassette transporter, membrane protein Length = 292 Score = 231 bits (588), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 121/284 (42%), Positives = 184/284 (64%), Gaps = 5/284 (1%) Query: 23 FAVSNYXXXXXXXXXXVLPFWYVLSVS-VTPYQIYSEKNGLVLFPTSFSLQYFDYLLKEG 81 F + NY VLPF +V++ S T ++ ++K +LFPT+FSL+ + Y+ Sbjct: 12 FNLFNYSFLLMFALICVLPFIHVIAASFATVEEVITKK--FILFPTTFSLEAYRYIFST- 68 Query: 82 SMIYNAYGNTIRNTVCGXXXXXXXXXXXXYSLAEKKLPGRRVIMLYFVFTMLFKGGMIPT 141 ++Y + +I T+ G Y L+ ++L GRR +M VFTMLF GGMIPT Sbjct: 69 DIVYRSLIVSILVTLVGTAVSMFLSSLMAYGLSRQELKGRRTLMFLVVFTMLFSGGMIPT 128 Query: 142 YITIKQLGLLNTNYVLILVMAYSAFNMILMKSFFEGIPESLKESASIDGASEFRILWRIV 201 +I +K LGLL+T + LIL +A +AFN+I++K+FF+ IP SL+ESA +DG ++ I ++IV Sbjct: 129 FIVVKTLGLLDTYWSLILPVAINAFNLIILKNFFQNIPASLEESAKMDGCNDLGIFFKIV 188 Query: 202 LPLSMPVIATVSLLYLVVYWNDFFNALLYTSEWSKAPVQLVLRTI-IASSSLPPELLETA 260 LPLS+P IAT+SL Y V YWN + A+LY ++ K P+Q++LR I I SS + ++ + Sbjct: 189 LPLSLPAIATISLFYAVTYWNTYMTAILYLNDSVKWPIQVLLRQIVIVSSGMQGDMSDMG 248 Query: 261 GSAPPPTIGIQMAAIVIVALPMMIIYPFVQRFFEQGMLIGSVKG 304 S PPP I+MA IV+ +P++++YPF+Q+ F +G L+GSVKG Sbjct: 249 SSTPPPDQTIKMAVIVVATIPVLLVYPFIQKHFNKGALLGSVKG 292 >P39129.1 LPLC_BACSU Protein lplC Length = 295 Score = 228 bits (581), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 179/294 (60%), Gaps = 2/294 (0%) Query: 11 IKPMKTSKRETGFAVSNYXXXXXXXXXXVLPFWYVLSVSVTPYQIYSEKNGLVLFPTSFS 70 I M +K F V N +LPF Y+++ S ++++ +FP +F+ Sbjct: 4 IHTMHNTKAGRVFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRS-FFIFPKTFT 62 Query: 71 LQYFDYLLKEGSMIYNAYGNTIRNTVCGXXXXXXXXXXXXYSLAEKKLPGRRVIMLYFVF 130 L + Y+ + + + G +I TV G Y LA++ + GR +++ +F Sbjct: 63 LDAYKYVFSTPTFL-RSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIF 121 Query: 131 TMLFKGGMIPTYITIKQLGLLNTNYVLILVMAYSAFNMILMKSFFEGIPESLKESASIDG 190 +MLF GGMIPTY+ +K LGLL+T + LIL MA + FN+I++K+FF+ +P L+ESA IDG Sbjct: 122 SMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDG 181 Query: 191 ASEFRILWRIVLPLSMPVIATVSLLYLVVYWNDFFNALLYTSEWSKAPVQLVLRTIIASS 250 SE + WRI LPLS PVIAT +L Y V WNDFF+ALLY ++ +K P+Q+VLR + S Sbjct: 182 CSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILS 241 Query: 251 SLPPELLETAGSAPPPTIGIQMAAIVIVALPMMIIYPFVQRFFEQGMLIGSVKG 304 L +T +A PP GI++A IVI LP++ +YPF+Q+ F +GMLIGSVKG Sbjct: 242 DLTATNGDTMQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVKG 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,610,926,323 Number of extensions: 59630807 Number of successful extensions: 232871 Number of sequences better than 1.0e-05: 5652 Number of HSP's gapped: 226550 Number of HSP's successfully gapped: 5652 Length of query: 304 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 169 Effective length of database: 1,788,859,178 Effective search space: 302317201082 Effective search space used: 302317201082 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)