BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0149.0013.p (268 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A9U7E1.1 A9U7E1_PHYPA Predicted protein (Fragment) 282 2e-74 B1DDM3.1 B1DDM3_9BACL Two component transcriptional regulator, A... 166 2e-39 A8RM75.1 A8RM75_9CLOT Putative uncharacterized protein 162 4e-38 A6M388.1 A6M388_CLOB8 Response regulator receiver protein 159 4e-37 B9Y687.1 B9Y687_9FIRM Putative uncharacterized protein 157 1e-36 >A9U7E1.1 A9U7E1_PHYPA Predicted protein (Fragment) Length = 458 Score = 282 bits (722), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 147/231 (63%), Positives = 186/231 (80%) Query: 5 LIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPVMNGL 64 L + DVK+VR+TL +IDW+ L I ++GAV+NGEE L WL+R+ PDL+LTDIGMP NGL Sbjct: 228 LRSHDVKLVRETLSRSIDWERLGIELVGAVKNGEEALEWLKRDPPDLLLTDIGMPKGNGL 287 Query: 65 QLIEAVMASHPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAHAVGELK 124 +LIEA AS P+IRCIILSGL+EFEHARQAIKL V +YI+KPIDPEEIE+V A V EL+ Sbjct: 288 ELIEAFRASKPEIRCIILSGLNEFEHARQAIKLQVQEYIMKPIDPEEIEQVFARIVAELR 347 Query: 125 LQREKQRGISMAEQAVKEKLPHLADVFPDAGWPENIKKRKLVEQAIGYIKEQFTRRDLSL 184 +RE+QRG+ + EQ ++++LP+LA P A W ++KK+KLVEQAI I+E ++R+DLSL Sbjct: 348 REREEQRGVELMEQRLRDRLPNLAQTLPMAEWSGSLKKKKLVEQAIQAIRENYSRKDLSL 407 Query: 185 AEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLIKIYE 235 +VA VGLS+KY+N LVKEVTG TIN I+ LRMEEAARLLKDP +IYE Sbjct: 408 WDVASGVGLSEKYVNALVKEVTGMTINHWIVKLRMEEAARLLKDPANRIYE 458 >B1DDM3.1 B1DDM3_9BACL Two component transcriptional regulator, AraC family Length = 267 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 95/272 (34%), Positives = 143/272 (52%), Gaps = 14/272 (5%) Query: 1 MYKLLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPV 60 MYK+LIA+D + + ++ I W L + V+ AV NG + L+ D+++TD+ MP Sbjct: 1 MYKVLIADDEVLDLEGMRLFIPWTELGLEVVAAVNNGFDAYEVLKGGKIDILVTDVHMPS 60 Query: 61 MNGLQLIEAVMASHP--DIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAH 118 M+GL+L + +R I +SG +F + +QA+ L Y+LKP+D E+ L H Sbjct: 61 MSGLELARKAQETESCLGLRVIFVSGYQDFHYVKQALSLRAYSYVLKPMDDSELVDALVH 120 Query: 119 AVGELKLQREKQRGISMAEQAVKEKLPHLADVFPDAGWPENI-----KKRKLVEQAIGYI 173 EL KQ +A + P + PEN+ K KL+++ Y+ Sbjct: 121 VTKELDEVTRKQEEERQWREAARRTAPRYQQL------PENVSVEPGKHTKLIQEVTAYM 174 Query: 174 KEQFTRRDLSLAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLIKI 233 KE R L+L EVA S YL L+ KE G ++ +I++RME A LLKDP +KI Sbjct: 175 KEHLNR-SLTLKEVAERFAFSPNYLGLMFKEEMGVGFSEYVITMRMERAGELLKDPKVKI 233 Query: 234 YEICDQIGYADQDHFRESFKKQFGLTPTKYRN 265 YE+ DQ+GY +F FK+ FG+TP +R Sbjct: 234 YEVADQVGYRYMPYFSRQFKETFGMTPIDFRR 265 >A8RM75.1 A8RM75_9CLOT Putative uncharacterized protein Length = 253 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 93/265 (35%), Positives = 151/265 (56%), Gaps = 15/265 (5%) Query: 1 MYKLLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPV 60 MYK+++ ED MVR + IDW +LD + G NGEE R PD+I+TD+ MP Sbjct: 1 MYKVIVVEDETMVRRGIILTIDWAALDCVIAGEAANGEEGAELAVRLSPDIIVTDVKMPR 60 Query: 61 MNGLQLIEAVMASHPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAHAV 120 M+G+++I + + IIL+ S+F++A+ A++L V DY+LKP+ ++E+ + H Sbjct: 61 MDGVEMITKLREQGCRAKFIILTAYSDFKYAQSALRLGVSDYLLKPLRDGDLEQAVRHI- 119 Query: 121 GELKLQREKQRGISMAEQAVKEKLPHLADVFPDAGWPENIKKRKLVEQAIGYIKEQFTRR 180 RE+ M E+ KE+ A V + K K VE A YI+E + R Sbjct: 120 ------REQ-----MEERPAKEEETDAAPVLR--FHSDKKSKNKYVEAATRYIREHY-RE 165 Query: 181 DLSLAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLIKIYEICDQI 240 D++++ VA + +S+ YL+ + K+ T T + RM+ A LLKD +K+YE+ DQ+ Sbjct: 166 DITISTVASFLEISEGYLSRVFKKETDYTFTNYLAYYRMQMAMNLLKDCRVKVYEVADQV 225 Query: 241 GYADQDHFRESFKKQFGLTPTKYRN 265 GY+D +F FKK G++P++Y++ Sbjct: 226 GYSDTAYFSAQFKKILGVSPSEYQD 250 >A6M388.1 A6M388_CLOB8 Response regulator receiver protein Length = 267 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 88/262 (33%), Positives = 155/262 (59%), Gaps = 4/262 (1%) Query: 3 KLLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPVMN 62 K++I +D ++RD +K IDW+ + + ++ N E L + +E PD+ILTDI MPV + Sbjct: 6 KVMIIDDEHLIRDLIKNCIDWNEIGMEIVAEASNAVEGLNLINKEKPDIILTDINMPVTD 65 Query: 63 GLQLIEAVMASHPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAHAVGE 122 GL + ++++ +PDI+ I+++G +EFE+A+++IK+ V D+ILKPID +E L ++V + Sbjct: 66 GLDMSKSILERYPDIKVIVITGYNEFEYAKRSIKIGVNDFILKPIDEDE----LRNSVLK 121 Query: 123 LKLQREKQRGISMAEQAVKEKLPHLADVFPDAGWPENIKKRKLVEQAIGYIKEQFTRRDL 182 LK + + + + +KEK+ ++ E K +EQ +I + + RDL Sbjct: 122 LKDEIQDEYLKKKEYKDIKEKMVVYNNIINLNDANETEDKNLSIEQIKKFIVKNISNRDL 181 Query: 183 SLAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLIKIYEICDQIGY 242 SL VA ++ YL+ + KE T T ++ I++ +++ +LK+P K YEI +IG Sbjct: 182 SLKLVAEYFYVNPSYLSRIFKEKTDETFSEYIVNTKVKIVTEMLKNPNAKAYEISKKIGI 241 Query: 243 ADQDHFRESFKKQFGLTPTKYR 264 D ++F FKK GL+ +Y+ Sbjct: 242 DDPNYFSNWFKKCTGLSIKEYK 263 >B9Y687.1 B9Y687_9FIRM Putative uncharacterized protein Length = 250 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 93/264 (35%), Positives = 146/264 (55%), Gaps = 23/264 (8%) Query: 1 MYKLLIAEDVKMVRDTLKYAIDWDSLDITVLGAVENGEEVLAWLEREVPDLILTDIGMPV 60 M + L+ +D + +R+ L I+ L I V+ A ENG +V+ + E+ PDL++ DI MP+ Sbjct: 1 MIRALVGDDEENIRNGLIRQIESLDLGIQVVAAAENGRQVMEYYEKMTPDLLILDINMPL 60 Query: 61 MNGLQLIEAVMASHPDIRCIILSGLSEFEHARQAIKLHVLDYILKPIDPEEIERVLAHAV 120 M+GL+ IE + A PD +ILSG F +A++AI+ HV Y+LKP++ EE+E L + Sbjct: 61 MSGLECIEQIRAQDPDCVILILSGYDHFSYAQKAIQHHVDFYLLKPVEDEELEDALRQSA 120 Query: 121 GELKLQREKQRGISMAEQAVKEKLPHLADVFPDAGWPENIKKRKLVEQAIGYIKEQFTRR 180 + + E+++ I A++A E P ++ I Y+ E FT Sbjct: 121 ARFQQRMEQRKLIRQAKEAEPE--------------PASL---------IRYLYEHFTDP 157 Query: 181 DLSLAEVAGSVGLSDKYLNLLVKEVTGNTINQMIISLRMEEAARLLKDPLIKIYEICDQI 240 DL+ ++ +S L LVK TG T+ ++I LRME A +LL + + EI + Sbjct: 158 DLNAEKLQEQFSISHSTLFKLVKTATGKTLVELITDLRMELAQKLLAQKELPVKEIAGRC 217 Query: 241 GYADQDHFRESFKKQFGLTPTKYR 264 GY+DQ +F FKKQ GL+P +YR Sbjct: 218 GYSDQFYFSRIFKKQTGLSPKEYR 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,542,297,051 Number of extensions: 61994124 Number of successful extensions: 276837 Number of sequences better than 1.0e-05: 8460 Number of HSP's gapped: 288218 Number of HSP's successfully gapped: 8848 Length of query: 268 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 135 Effective length of database: 1,807,701,208 Effective search space: 244039663080 Effective search space used: 244039663080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)